Wall clock time and date at job start Tue Mar 31 2020 16:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81406 * 103.00155 * 2 1 4 4 C 1.52998 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46892 * 60.00133 * 4 3 2 6 6 C 1.52994 * 109.47063 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47107 * 185.82234 * 6 4 3 8 8 O 1.42902 * 109.47166 * 178.31216 * 7 6 4 9 9 N 1.46901 * 109.46985 * 300.00016 * 4 3 2 10 10 C 1.46899 * 110.99651 * 142.55389 * 9 4 3 11 11 H 1.09005 * 109.47267 * 35.03058 * 10 9 4 12 12 C 1.53000 * 109.47439 * 275.02837 * 10 9 4 13 13 C 1.50701 * 109.47211 * 155.02863 * 10 9 4 14 14 C 1.38306 * 119.93238 * 220.00342 * 13 10 9 15 15 C 1.38100 * 120.06633 * 179.97438 * 14 13 10 16 16 C 1.38880 * 119.93400 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.06929 * 179.97438 * 16 15 14 18 18 C 1.34828 * 117.00177 * 354.45776 * 17 16 15 19 19 H 1.08004 * 119.99648 * 5.08017 * 18 17 16 20 20 C 1.38649 * 120.00225 * 185.08522 * 18 17 16 21 21 N 1.31560 * 120.00256 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00019 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46945 * 90.00279 * 22 20 18 24 24 H 1.48501 * 109.47306 * 210.00386 * 22 20 18 25 25 H 1.48499 * 109.46801 * 330.00255 * 22 20 18 26 26 C 1.38883 * 119.86102 * 359.97438 * 16 15 14 27 27 C 1.38103 * 119.92975 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47359 * 300.00440 * 1 2 3 30 30 H 1.09006 * 109.47166 * 59.99588 * 1 2 3 31 31 H 1.09000 * 109.46617 * 59.99951 * 3 2 1 32 32 H 1.08997 * 109.47279 * 300.00590 * 3 2 1 33 33 H 1.09004 * 109.47384 * 305.82520 * 6 4 3 34 34 H 1.09004 * 109.47777 * 65.82390 * 6 4 3 35 35 H 1.08997 * 109.47041 * 298.31414 * 7 6 4 36 36 H 1.08998 * 109.47104 * 58.31905 * 7 6 4 37 37 H 0.96697 * 113.99766 * 180.02562 * 8 7 6 38 38 H 1.00903 * 111.00054 * 18.60299 * 9 4 3 39 39 H 1.08997 * 109.46922 * 60.00316 * 12 10 9 40 40 H 1.08999 * 109.46993 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47011 * 300.00133 * 12 10 9 42 42 H 1.07994 * 119.96194 * 0.25225 * 14 13 10 43 43 H 1.07996 * 120.03108 * 180.02562 * 15 14 13 44 44 H 0.96999 * 119.99870 * 180.02562 * 21 20 18 45 45 H 1.07992 * 120.03363 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96387 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1616 1.4703 -0.8891 6 6 4.0865 3.4307 0.0013 7 6 5.5996 3.6049 -0.1444 8 8 5.9172 4.9976 -0.1833 9 7 4.3064 1.3072 1.2004 10 6 5.5898 0.6589 0.8996 11 1 6.1268 1.2447 0.1536 12 6 5.3352 -0.7486 0.3562 13 6 6.4148 0.5700 2.1576 14 6 7.7766 0.8062 2.1079 15 6 8.5352 0.7261 3.2591 16 6 7.9293 0.4073 4.4675 17 8 8.6724 0.3272 5.6007 18 6 10.0080 0.4547 5.4671 19 1 10.4339 0.6943 4.5040 20 6 10.8346 0.2782 6.5662 21 7 12.1379 0.4022 6.4358 22 14 10.0978 -0.1355 8.2322 23 1 10.0030 -1.6102 8.3790 24 1 10.9632 0.4142 9.3065 25 1 8.7416 0.4605 8.3354 26 6 6.5616 0.1706 4.5140 27 6 5.8084 0.2523 3.3593 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8031 2.2371 0.8900 32 1 1.8031 2.2372 -0.8899 33 1 3.5824 3.9204 -0.8320 34 1 3.7578 3.8792 0.9388 35 1 6.1020 3.1412 0.7044 36 1 5.9327 3.1305 -1.0674 37 1 6.8617 5.1832 -0.2751 38 1 3.6549 0.6501 1.6029 39 1 4.7386 -0.6843 -0.5537 40 1 6.2876 -1.2297 0.1334 41 1 4.7983 -1.3344 1.1021 42 1 8.2464 1.0581 1.1687 43 1 9.5984 0.9111 3.2197 44 1 12.7161 0.2783 7.2047 45 1 6.0877 -0.0779 5.4521 46 1 4.7449 0.0680 3.3948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181797229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:41 Heat of formation + Delta-G solvation = -58.337379 kcal Electronic energy + Delta-G solvation = -25405.131992 eV Core-core repulsion = 21807.523341 eV Total energy + Delta-G solvation = -3597.608651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.45942 -38.46530 -36.92099 -36.07384 -33.35190 -32.28170 -30.30820 -29.77810 -29.41760 -28.45334 -27.83856 -25.29672 -23.56813 -22.43871 -22.15287 -20.75065 -19.97599 -17.81106 -17.32812 -17.28459 -16.64159 -16.37944 -15.63063 -14.97424 -14.70237 -14.64794 -14.39908 -14.11698 -13.87544 -13.83948 -13.71137 -13.65215 -13.23434 -13.22476 -12.84179 -12.68651 -12.43443 -12.30407 -12.22914 -12.03706 -11.73092 -11.53035 -11.30744 -11.17642 -10.99976 -10.65117 -10.57644 -10.48585 -10.31941 -10.10088 -9.94138 -9.34777 -8.83311 -8.47995 -8.18864 -8.01588 -7.23841 -6.38666 -4.05010 1.25579 2.17947 2.19076 2.28044 3.24196 3.27785 3.42986 3.95632 4.09427 4.26538 4.49465 4.53191 4.73233 4.75391 4.78736 4.90846 4.94126 5.06801 5.12558 5.15432 5.22382 5.27721 5.31091 5.31637 5.43328 5.51950 5.57755 5.63917 5.76113 5.83466 5.94982 5.99977 6.08189 6.19390 6.23637 6.40089 6.62295 6.80412 6.95093 7.14706 7.32900 7.38680 7.39677 7.56634 7.66352 7.83725 8.07773 8.97142 9.60821 10.69196 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.002827 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.321354 B = 9902.644783 C =10920.295609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.258 6.258 3 C -0.095 4.095 4 C 0.107 3.893 5 H 0.061 0.939 6 C -0.101 4.101 7 C 0.074 3.926 8 O -0.579 6.579 9 N -0.674 5.674 10 C 0.136 3.864 11 H 0.077 0.923 12 C -0.175 4.175 13 C -0.156 4.156 14 C -0.071 4.071 15 C -0.220 4.220 16 C 0.159 3.841 17 O -0.220 6.220 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.193 4.193 27 C -0.054 4.054 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.380 0.620 38 H 0.350 0.650 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.279 0.721 45 H 0.114 0.886 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.123 1.795 -15.621 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.032 6.032 3 C -0.243 4.243 4 C -0.005 4.005 5 H 0.079 0.921 6 C -0.141 4.141 7 C -0.003 4.003 8 O -0.384 6.384 9 N -0.309 5.309 10 C 0.027 3.973 11 H 0.095 0.905 12 C -0.234 4.234 13 C -0.158 4.158 14 C -0.090 4.090 15 C -0.239 4.239 16 C 0.107 3.893 17 O -0.125 6.125 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.212 4.212 27 C -0.073 4.073 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.226 0.774 38 H 0.172 0.828 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.691 1.495 -14.971 24.781 hybrid contribution -0.573 -0.016 0.096 0.581 sum -20.264 1.479 -14.874 25.180 Atomic orbital electron populations 1.23391 0.94246 1.06571 1.04927 1.87016 1.07410 1.10958 1.97849 1.23793 1.00104 0.94632 1.05818 1.21206 0.90186 0.95383 0.93694 0.92137 1.21491 0.95146 0.94364 1.03072 1.22279 0.96326 0.81797 0.99944 1.86408 1.30001 1.24850 1.97173 1.60791 1.05729 1.37642 1.26690 1.20374 0.89384 0.92872 0.94694 0.90514 1.22499 1.02011 0.98037 1.00854 1.19107 0.93230 1.09340 0.94091 1.20563 0.92916 0.98485 0.97033 1.21206 1.01140 1.09138 0.92392 1.19125 0.90911 0.93121 0.86151 1.83573 1.20210 1.80407 1.28316 1.20754 0.77192 1.49045 0.99367 0.87704 1.24458 0.94400 0.95968 0.99215 1.69648 1.02339 1.47860 1.32167 0.86186 0.79864 0.79145 0.81740 1.19938 1.20850 1.18351 1.20209 0.91637 1.10548 0.98822 1.20322 0.98033 0.97556 0.91358 0.88056 0.90356 0.90577 0.89012 0.89432 0.91615 0.90234 0.91584 0.94630 0.77354 0.82784 0.92989 0.92018 0.92108 0.87709 0.85127 0.91124 0.86754 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.76 101.05 1.09 0.38 16 2 S -0.26 -2.18 20.99 -107.50 -2.26 -4.43 16 3 C -0.09 -0.73 5.48 37.16 0.20 -0.52 16 4 C 0.11 0.98 2.10 -67.72 -0.14 0.84 16 5 H 0.06 0.57 7.14 -51.93 -0.37 0.20 16 6 C -0.10 -1.00 5.25 -26.73 -0.14 -1.14 16 7 C 0.07 0.81 5.77 37.16 0.21 1.02 16 8 O -0.58 -6.69 13.66 -35.23 -0.48 -7.17 16 9 N -0.67 -7.52 5.32 -100.96 -0.54 -8.05 16 10 C 0.14 1.67 1.73 -68.86 -0.12 1.55 16 11 H 0.08 0.91 5.65 -51.93 -0.29 0.61 16 12 C -0.18 -2.02 9.12 37.16 0.34 -1.68 16 13 C -0.16 -2.48 4.96 -104.57 -0.52 -3.00 16 14 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 15 C -0.22 -4.69 9.17 -39.39 -0.36 -5.05 16 16 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 17 O -0.22 -5.85 8.59 0.06 0.00 -5.85 16 18 C -0.39 -10.99 9.95 30.88 0.31 -10.69 16 19 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.63 13.96 55.48 0.77 -24.86 16 22 Si 0.90 21.88 28.62 -169.99 -4.86 17.02 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 26 C -0.19 -3.84 9.99 -39.39 -0.39 -4.24 16 27 C -0.05 -0.91 9.31 -39.61 -0.37 -1.28 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.83 6.50 -51.93 -0.34 0.50 16 36 H 0.04 0.34 8.03 -51.93 -0.42 -0.07 16 37 H 0.38 2.93 9.12 45.56 0.42 3.35 16 38 H 0.35 3.90 5.99 -39.29 -0.24 3.67 16 39 H 0.05 0.55 7.64 -51.93 -0.40 0.15 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 42 H 0.10 1.57 8.03 -52.49 -0.42 1.15 16 43 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 44 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.11 1.61 7.24 -52.49 -0.38 1.23 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -30.77 383.90 -8.59 -39.36 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.38 Total: 8.57 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.63 Total: -20.36 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.24 Total: -32.91 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.48 Total: -13.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.02 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.26 Total: -4.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.77 -8.59 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181797229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.978 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds