Wall clock time and date at job start Tue Mar 31 2020 16:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 O 1.42894 * 109.47322 * 119.99926 * 2 1 3 5 5 C 1.42904 * 114.00112 * 149.99757 * 4 2 1 6 6 C 1.52995 * 109.47385 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47251 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99814 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.40093 * 120.00112 * 185.61151 * 10 8 7 12 12 C 1.38712 * 120.07411 * 34.07260 * 11 10 8 13 13 C 1.38188 * 120.02011 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.17548 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.92178 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.15584 * 0.02562 * 14 13 12 17 17 C 1.38735 * 119.97575 * 359.97438 * 16 14 13 18 18 O 1.35777 * 120.08743 * 180.29716 * 17 16 14 19 19 C 1.34800 * 117.00080 * 354.19171 * 18 17 16 20 20 H 1.08007 * 119.99887 * 354.52311 * 19 18 17 21 21 C 1.38630 * 120.00177 * 174.51703 * 19 18 17 22 22 N 1.31568 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00299 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46674 * 60.00055 * 23 21 19 25 25 H 1.48505 * 109.47610 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47261 * 300.00571 * 23 21 19 27 27 H 1.09001 * 109.46994 * 299.99745 * 1 2 3 28 28 H 1.09001 * 109.47342 * 59.99541 * 1 2 3 29 29 H 1.08997 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46994 * 240.00255 * 2 1 3 31 31 H 1.08995 * 109.47393 * 60.00086 * 3 2 1 32 32 H 1.08994 * 109.47128 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46937 * 300.00312 * 3 2 1 34 34 H 1.09004 * 109.46490 * 59.99998 * 5 4 2 35 35 H 1.08995 * 109.46945 * 300.00620 * 5 4 2 36 36 H 1.09007 * 109.46873 * 60.00165 * 6 5 4 37 37 H 1.09006 * 109.47256 * 300.00521 * 6 5 4 38 38 H 1.09007 * 109.47069 * 60.00280 * 7 6 5 39 39 H 1.08997 * 109.47541 * 300.00628 * 7 6 5 40 40 H 0.97001 * 120.00245 * 5.61242 * 10 8 7 41 41 H 1.07997 * 119.98691 * 359.97298 * 12 11 10 42 42 H 1.07996 * 119.90792 * 180.02562 * 13 12 11 43 43 H 1.08001 * 120.01082 * 180.02562 * 16 14 13 44 44 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6762 -2.0080 2.2944 7 6 5.0250 -2.7043 2.1038 8 6 5.4293 -3.3771 3.3902 9 8 4.7091 -3.3069 4.3637 10 7 6.5907 -4.0576 3.4588 11 6 6.9117 -4.7806 4.6150 12 6 5.9100 -5.3991 5.3486 13 6 6.2280 -6.1125 6.4886 14 6 7.5463 -6.2119 6.9028 15 9 7.8513 -6.9102 8.0184 16 6 8.5510 -5.5971 6.1773 17 6 8.2390 -4.8793 5.0318 18 8 9.2239 -4.2800 4.3147 19 6 10.4678 -4.3179 4.8327 20 1 10.6304 -4.7309 5.8173 21 6 11.5385 -3.8268 4.1016 22 7 11.3405 -3.3233 2.9023 23 14 13.2624 -3.8800 4.8191 24 1 13.6373 -5.2888 5.1023 25 1 14.2217 -3.2979 3.8464 26 1 13.2985 -3.0953 6.0793 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 4.0199 -0.5873 0.7123 35 1 3.1809 -2.0706 0.1985 36 1 2.9222 -2.7451 2.5710 37 1 3.7614 -1.2615 3.0841 38 1 5.7788 -1.9669 1.8274 39 1 4.9403 -3.4507 1.3140 40 1 7.2043 -4.0467 2.7076 41 1 4.8813 -5.3231 5.0287 42 1 5.4467 -6.5936 7.0582 43 1 9.5780 -5.6765 6.5021 44 1 12.0895 -2.9794 2.3909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183120538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:20 Heat of formation + Delta-G solvation = -146.989547 kcal Electronic energy + Delta-G solvation = -26659.162959 eV Core-core repulsion = 22491.496886 eV Total energy + Delta-G solvation = -4167.666073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -48.27509 -40.13888 -38.81656 -38.45064 -36.40115 -34.32414 -34.03386 -32.44057 -32.23910 -29.51060 -28.71039 -27.54584 -26.56571 -25.51408 -22.82813 -21.99369 -21.62373 -21.18531 -19.85474 -18.37210 -17.89982 -17.24881 -16.63678 -16.57022 -16.19636 -15.48489 -15.26909 -15.15775 -14.97634 -14.76586 -14.32657 -14.11048 -13.83793 -13.61301 -13.54018 -13.33768 -13.07195 -12.82881 -12.62440 -12.45940 -12.28119 -12.16924 -11.88102 -11.73004 -11.65803 -11.37968 -11.32468 -10.98557 -10.93781 -10.85485 -10.74747 -10.58081 -9.85347 -9.74438 -9.71702 -9.38080 -8.98436 -7.92125 -7.14259 -6.63364 -4.20986 1.76912 2.09061 2.94798 3.05989 3.06422 3.08872 3.23998 3.69689 3.83264 4.30610 4.58681 4.73319 4.80037 4.84078 4.88707 4.91073 4.92969 5.05331 5.08824 5.20890 5.29826 5.31941 5.38445 5.49828 5.50970 5.54573 5.56729 5.64764 5.72679 5.88738 5.92516 5.99630 6.07447 6.20648 6.24470 6.49004 6.73079 6.88650 6.89846 7.02774 7.08936 7.16024 7.60522 7.79846 7.89705 8.53178 8.82650 9.43305 10.53656 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.002638 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.392019 B =10612.532780 C =12744.717794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.382 6.382 5 C 0.062 3.938 6 C -0.102 4.102 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.651 5.651 11 C 0.060 3.940 12 C -0.049 4.049 13 C -0.228 4.228 14 C 0.130 3.870 15 F -0.151 7.151 16 C -0.258 4.258 17 C 0.158 3.842 18 O -0.167 6.167 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.268 1.268 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.415 0.585 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 3.395 -7.320 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.301 6.301 5 C -0.014 4.014 6 C -0.139 4.139 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.412 6.412 10 N -0.296 5.296 11 C -0.034 4.034 12 C -0.069 4.069 13 C -0.249 4.249 14 C 0.110 3.890 15 F -0.130 7.130 16 C -0.279 4.279 17 C 0.102 3.898 18 O -0.070 6.070 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.161 4.161 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.193 1.193 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.251 0.749 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.970 3.677 -6.883 16.002 hybrid contribution 1.595 -0.128 -0.015 1.600 sum -12.375 3.549 -6.899 14.606 Atomic orbital electron populations 1.21863 0.93728 1.02695 1.02433 1.22068 0.94955 0.92485 0.88278 1.22309 1.01702 0.96848 1.02509 1.87937 1.36768 1.69991 1.35453 1.22557 0.85504 0.95395 0.97979 1.21198 0.95560 1.00436 0.96755 1.21520 0.98864 1.01181 0.96111 1.20597 0.81168 0.78305 0.90193 1.90692 1.52464 1.60391 1.37625 1.43213 1.21077 1.48217 1.17085 1.16849 0.90463 1.02997 0.93069 1.20460 0.98419 0.94014 0.94053 1.20453 0.94277 1.08884 1.01238 1.17448 0.93481 0.94193 0.83844 1.91412 1.94130 1.77039 1.50394 1.20872 1.00108 1.07172 0.99753 1.18833 0.88373 0.92003 0.90595 1.83927 1.15915 1.63872 1.43315 1.21295 0.80515 1.43045 1.01951 0.88895 1.25279 0.99561 0.95881 0.95428 1.69994 1.32712 1.36474 1.10179 0.85752 0.79714 0.79175 0.78727 1.19321 1.20161 1.19345 0.91765 0.91394 0.92000 0.92326 0.91727 0.92378 0.91793 0.93242 0.93307 0.90324 0.90234 0.88394 0.88590 0.74857 0.84723 0.85895 0.83946 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.56 37.16 0.36 -0.74 16 2 C 0.08 0.69 3.34 -26.73 -0.09 0.60 16 3 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 4 O -0.38 -4.35 9.99 -35.23 -0.35 -4.70 16 5 C 0.06 0.62 5.75 37.15 0.21 0.84 16 6 C -0.10 -1.20 4.87 -26.74 -0.13 -1.33 16 7 C -0.14 -1.58 5.70 -27.89 -0.16 -1.74 16 8 C 0.51 8.32 7.56 -10.99 -0.08 8.24 16 9 O -0.53 -10.33 13.74 5.54 0.08 -10.26 16 10 N -0.65 -11.60 5.20 -9.71 -0.05 -11.65 16 11 C 0.06 1.24 6.28 -83.45 -0.52 0.71 16 12 C -0.05 -0.94 8.65 -39.42 -0.34 -1.28 16 13 C -0.23 -4.23 10.02 -39.49 -0.40 -4.63 16 14 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.26 -5.62 9.11 -39.36 -0.36 -5.98 16 17 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 18 O -0.17 -4.33 9.30 0.05 0.00 -4.33 16 19 C -0.39 -10.28 9.44 30.88 0.29 -9.99 16 20 H 0.09 2.29 5.30 -52.48 -0.28 2.02 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 22 N -0.86 -23.20 13.67 55.48 0.76 -22.44 16 23 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.42 6.96 8.55 -40.82 -0.35 6.61 16 41 H 0.14 2.44 6.48 -52.49 -0.34 2.10 16 42 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.14 3.10 5.71 -52.49 -0.30 2.80 16 44 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -30.20 376.51 -6.65 -36.85 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.27 Total: 8.79 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.51 Total: -9.60 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.71 Total: -34.10 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.28 Total: -19.29 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.20 -6.65 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183120538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.138 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds