Wall clock time and date at job start Tue Mar 31 2020 14:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46900 * 2 1 4 4 H 1.08998 * 109.47437 * 55.00415 * 3 2 1 5 5 C 1.50708 * 109.46908 * 174.99908 * 3 2 1 6 6 H 1.08001 * 119.99655 * 120.00111 * 5 3 2 7 7 C 1.37870 * 120.00081 * 300.00480 * 5 3 2 8 8 N 1.31520 * 120.00232 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00110 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46905 * 59.99587 * 9 7 5 11 11 H 1.48497 * 109.47410 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46998 * 300.00202 * 9 7 5 13 13 N 1.46497 * 109.47378 * 295.00108 * 3 2 1 14 14 C 1.34777 * 120.00131 * 85.00339 * 13 3 2 15 15 O 1.21590 * 119.99537 * 359.97438 * 14 13 3 16 16 C 1.47533 * 120.00083 * 179.97438 * 14 13 3 17 17 C 1.39699 * 120.19071 * 0.02562 * 16 14 13 18 18 C 1.37794 * 119.90667 * 179.97438 * 17 16 14 19 19 C 1.38554 * 120.30742 * 359.97438 * 18 17 16 20 20 C 1.38050 * 120.38936 * 359.97438 * 19 18 17 21 21 C 1.38729 * 120.08610 * 359.79074 * 20 19 18 22 22 O 1.35634 * 120.15625 * 180.25511 * 21 20 19 23 23 C 1.35885 * 118.00356 * 267.24617 * 22 21 20 24 24 C 1.38763 * 120.05321 * 5.42931 * 23 22 21 25 25 C 1.38139 * 119.93674 * 179.76789 * 24 23 22 26 26 C 1.38270 * 120.06041 * 0.50056 * 25 24 23 27 27 C 1.38266 * 120.11379 * 359.74790 * 26 25 24 28 28 C 1.38131 * 120.06376 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47574 * 59.99856 * 1 2 3 31 31 H 1.09001 * 109.47377 * 299.99283 * 1 2 3 32 32 H 1.08997 * 109.47470 * 120.00373 * 2 1 3 33 33 H 1.09004 * 109.47196 * 240.00224 * 2 1 3 34 34 H 0.97003 * 120.00070 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00229 * 264.99505 * 13 3 2 36 36 H 1.07993 * 120.04696 * 359.94845 * 17 16 14 37 37 H 1.08003 * 119.84594 * 179.97438 * 18 17 16 38 38 H 1.08001 * 119.80494 * 179.97438 * 19 18 17 39 39 H 1.08002 * 119.95999 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.02825 * 359.97438 * 24 23 22 41 41 H 1.08005 * 119.96499 * 180.24958 * 25 24 23 42 42 H 1.07993 * 119.93989 * 179.72697 * 26 25 24 43 43 H 1.08006 * 119.96690 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.03533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8799 1.3811 10 1 6.5005 2.2799 1.3808 11 1 6.3979 0.2166 2.6503 12 1 6.5966 0.1453 0.2342 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 6 0.0449 3.3246 -2.6273 17 6 0.9340 3.3639 -3.7042 18 6 0.5634 3.9815 -4.8788 19 6 -0.6881 4.5641 -4.9979 20 6 -1.5768 4.5316 -3.9420 21 6 -1.2224 3.9098 -2.7536 22 8 -2.0964 3.8726 -1.7170 23 6 -2.0268 4.8617 -0.7879 24 6 -1.1600 5.9294 -0.9732 25 6 -1.0947 6.9361 -0.0295 26 6 -1.8845 6.8753 1.1039 27 6 -2.7452 5.8099 1.2933 28 6 -2.8179 4.8030 0.3506 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0606 2.9502 35 1 2.2718 2.1233 -1.9977 36 1 1.9105 2.9112 -3.6160 37 1 1.2516 4.0117 -5.7106 38 1 -0.9700 5.0464 -5.9222 39 1 -2.5507 4.9875 -4.0425 40 1 -0.5396 5.9749 -1.8559 41 1 -0.4232 7.7693 -0.1751 42 1 -1.8286 7.6611 1.8425 43 1 -3.3613 5.7650 2.1793 44 1 -3.4901 3.9708 0.4992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183851835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:57 Heat of formation + Delta-G solvation = -10.908899 kcal Electronic energy + Delta-G solvation = -27762.128337 eV Core-core repulsion = 24031.132388 eV Total energy + Delta-G solvation = -3730.995949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96175 -39.10932 -38.09312 -37.09855 -34.98098 -32.56980 -31.57505 -31.05822 -30.48907 -30.30976 -29.23127 -26.95797 -24.12464 -23.34040 -22.90632 -22.43139 -21.48955 -20.37927 -19.34457 -18.62992 -17.70192 -16.67903 -16.27021 -15.88312 -15.73226 -15.15258 -14.97579 -14.59912 -14.50367 -14.23672 -14.07333 -13.60084 -13.40707 -13.24865 -13.05638 -12.66863 -12.50856 -12.11823 -11.90775 -11.78364 -11.48449 -11.44625 -11.24340 -11.08187 -10.99143 -10.81926 -10.81344 -10.31904 -10.15862 -9.61152 -9.09485 -9.06359 -8.99016 -8.82773 -8.79878 -8.49034 -8.04466 -7.78694 -6.11806 -4.21520 0.79446 1.07351 1.52404 1.64164 3.09120 3.25075 3.30642 3.31452 3.47871 3.98225 3.99807 4.11490 4.36539 4.70953 4.79430 4.97430 5.00403 5.05880 5.19270 5.23043 5.26895 5.30465 5.46652 5.52882 5.68951 5.74023 5.89144 6.09950 6.15901 6.22227 6.28227 6.42650 6.47335 6.50056 6.55327 6.59397 6.67882 6.69967 7.02062 7.07750 7.22863 7.38719 7.45800 7.62472 7.73615 7.78617 7.91058 8.18797 8.65306 8.77598 9.12163 9.45659 10.93437 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004298 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.535120 B = 6513.084203 C = 7544.873893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.537 3.463 15 O -0.521 6.521 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.139 4.139 21 C 0.134 3.866 22 O -0.243 6.243 23 C 0.157 3.843 24 C -0.199 4.199 25 C -0.083 4.083 26 C -0.161 4.161 27 C -0.084 4.084 28 C -0.138 4.138 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.385 0.615 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 10.725 -11.462 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.321 3.679 15 O -0.399 6.399 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.144 4.144 19 C -0.111 4.111 20 C -0.157 4.157 21 C 0.090 3.910 22 O -0.154 6.154 23 C 0.114 3.886 24 C -0.217 4.217 25 C -0.102 4.102 26 C -0.179 4.179 27 C -0.102 4.102 28 C -0.156 4.156 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.575 10.413 -10.536 17.639 hybrid contribution 1.580 -0.095 -0.399 1.633 sum -7.995 10.318 -10.935 17.028 Atomic orbital electron populations 1.21831 0.98234 0.97997 1.01320 1.21932 0.92683 0.99718 1.02215 1.18790 0.94158 0.89160 0.80765 0.93220 1.21174 0.90655 1.39178 1.06337 0.92232 1.24871 0.98541 0.94787 0.95363 1.69888 1.35196 1.37471 1.09288 0.86528 0.84923 0.78294 0.77469 1.20212 1.21106 1.20166 1.46447 1.14227 1.55789 1.18588 1.17918 0.83323 0.80012 0.86622 1.90804 1.50943 1.58858 1.39296 1.20855 0.93940 1.02139 0.96632 1.21386 0.99083 0.97253 0.92047 1.21171 0.96845 0.98581 0.97817 1.21139 0.93406 0.98390 0.98185 1.21347 1.01017 1.00166 0.93169 1.18634 0.88049 0.96780 0.87505 1.84247 1.52484 1.46323 1.32382 1.18939 0.94849 0.85930 0.88847 1.21205 1.02220 0.96196 1.02119 1.20862 0.97970 0.97743 0.93577 1.20990 0.98881 0.99616 0.98451 1.20901 0.98102 0.93276 0.97904 1.20364 1.02343 1.00557 0.92346 0.95936 0.94251 0.93125 0.88281 0.95113 0.92500 0.78142 0.84665 0.85074 0.85102 0.84827 0.86111 0.86134 0.86200 0.85558 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.81 4.97 -55.98 -0.28 -15.09 16 14 C 0.54 11.13 6.33 -12.47 -0.08 11.05 16 15 O -0.52 -12.39 11.32 -16.59 -0.19 -12.58 16 16 C -0.13 -2.19 5.87 -104.84 -0.62 -2.81 16 17 C -0.08 -1.02 9.54 -39.20 -0.37 -1.40 16 18 C -0.13 -1.28 10.02 -39.63 -0.40 -1.68 16 19 C -0.09 -0.90 10.03 -39.53 -0.40 -1.30 16 20 C -0.14 -1.66 9.80 -39.47 -0.39 -2.05 16 21 C 0.13 2.12 3.99 -38.68 -0.15 1.96 16 22 O -0.24 -4.33 8.57 -24.62 -0.21 -4.54 16 23 C 0.16 2.68 5.40 -39.19 -0.21 2.47 16 24 C -0.20 -3.12 9.20 -39.42 -0.36 -3.48 16 25 C -0.08 -1.16 10.04 -39.61 -0.40 -1.56 16 26 C -0.16 -2.13 10.04 -39.56 -0.40 -2.53 16 27 C -0.08 -1.15 10.04 -39.61 -0.40 -1.55 16 28 C -0.14 -2.18 9.99 -39.43 -0.39 -2.58 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.39 7.03 6.57 -40.82 -0.27 6.76 16 36 H 0.14 1.57 6.40 -52.49 -0.34 1.24 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.82 6.69 -52.49 -0.35 1.47 16 41 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -31.61 362.95 -10.25 -41.86 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.70 Total: 10.90 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.94 Total: -17.47 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.35 Total: -39.20 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.40 Total: -17.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.61 -10.25 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183851835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.954 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds