Wall clock time and date at job start Tue Mar 31 2020 14:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47371 * 2 1 4 4 H 1.08991 * 109.47022 * 305.00219 * 3 2 1 5 5 C 1.50698 * 109.47011 * 185.00106 * 3 2 1 6 6 H 1.08007 * 119.99567 * 240.00124 * 5 3 2 7 7 C 1.37875 * 120.00176 * 60.00628 * 5 3 2 8 8 N 1.31514 * 119.99890 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47529 * 89.99334 * 9 7 5 11 11 H 1.48498 * 109.47199 * 209.99588 * 9 7 5 12 12 H 1.48504 * 109.47094 * 329.99087 * 9 7 5 13 13 N 1.46503 * 109.46595 * 65.00058 * 3 2 1 14 14 C 1.34772 * 120.00225 * 274.99797 * 13 3 2 15 15 O 1.21558 * 120.00015 * 0.02562 * 14 13 3 16 16 C 1.47855 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.39603 * 120.11853 * 359.72343 * 16 14 13 18 18 C 1.37976 * 119.97192 * 179.72435 * 17 16 14 19 19 C 1.38278 * 120.20482 * 0.55601 * 18 17 16 20 20 C 1.38829 * 120.24079 * 359.72091 * 19 18 17 21 21 O 1.35891 * 119.99252 * 180.02562 * 20 19 18 22 22 C 1.35882 * 117.99972 * 247.42819 * 21 20 19 23 23 C 1.38753 * 120.05975 * 5.84595 * 22 21 20 24 24 C 1.38140 * 119.94418 * 179.74322 * 23 22 21 25 25 C 1.38274 * 120.05690 * 0.50966 * 24 23 22 26 26 C 1.38262 * 120.11534 * 359.76174 * 25 24 23 27 27 C 1.38143 * 120.06052 * 359.97438 * 26 25 24 28 28 C 1.38521 * 120.02354 * 0.02562 * 20 19 18 29 29 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47212 * 59.99470 * 1 2 3 31 31 H 1.09001 * 109.46820 * 299.99531 * 1 2 3 32 32 H 1.09007 * 109.47305 * 120.00335 * 2 1 3 33 33 H 1.08996 * 109.47179 * 240.00176 * 2 1 3 34 34 H 0.96999 * 120.00000 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99879 * 95.00660 * 13 3 2 36 36 H 1.08000 * 120.01857 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.89366 * 180.25711 * 18 17 16 38 38 H 1.08006 * 119.87815 * 179.74538 * 19 18 17 39 39 H 1.08006 * 120.02817 * 359.96968 * 23 22 21 40 40 H 1.08004 * 119.96889 * 180.22911 * 24 23 22 41 41 H 1.07995 * 119.93751 * 179.74671 * 25 24 23 42 42 H 1.08004 * 119.97130 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.02689 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.10604 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3368 -2.1730 9 14 6.0049 0.8799 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3413 2.6319 0.4324 16 6 0.0443 3.3258 2.6303 17 6 0.9319 3.3594 3.7073 18 6 0.5662 3.9824 4.8828 19 6 -0.6824 4.5645 5.0024 20 6 -1.5742 4.5311 3.9389 21 8 -2.7997 5.1051 4.0617 22 6 -3.8880 4.2915 4.0628 23 6 -3.7256 2.9135 4.0633 24 6 -4.8337 2.0886 4.0699 25 6 -6.1039 2.6350 4.0653 26 6 -6.2685 4.0077 4.0591 27 6 -5.1638 4.8372 4.0580 28 6 -1.2151 3.9128 2.7524 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0616 -2.9496 35 1 2.2720 2.1231 1.9979 36 1 1.9061 2.9016 3.6191 37 1 1.2555 4.0114 5.7138 38 1 -0.9648 5.0472 5.9264 39 1 -2.7337 2.4862 4.0623 40 1 -4.7077 1.0159 4.0740 41 1 -6.9688 1.9882 4.0662 42 1 -7.2617 4.4320 4.0559 43 1 -5.2931 5.9094 4.0528 44 1 -1.9076 3.8864 1.9241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183888418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:12 Heat of formation + Delta-G solvation = -16.585687 kcal Electronic energy + Delta-G solvation = -26645.454870 eV Core-core repulsion = 22914.212758 eV Total energy + Delta-G solvation = -3731.242113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10827 -39.55330 -38.36207 -37.13714 -35.11623 -32.58544 -31.57959 -31.35545 -30.71406 -30.54751 -29.40904 -27.02643 -24.14078 -23.75772 -22.88114 -22.66968 -21.80019 -20.43586 -19.48354 -18.82324 -17.62897 -16.58618 -16.33682 -16.25966 -16.05770 -15.44425 -15.25126 -14.73173 -14.58223 -14.45787 -14.03538 -13.78443 -13.66851 -13.57932 -13.26730 -12.73065 -12.61782 -12.25153 -11.98848 -11.87446 -11.80631 -11.52156 -11.31576 -11.22008 -11.12417 -11.02389 -10.85396 -10.35452 -10.22099 -9.67864 -9.21339 -9.20527 -9.08661 -9.07292 -8.97888 -8.54152 -8.35596 -7.89132 -6.15765 -4.25595 0.76745 1.01530 1.16029 1.25858 2.82321 3.21905 3.29234 3.29870 3.31018 3.58904 3.92779 4.05536 4.33045 4.65368 4.70827 4.74289 4.80404 4.94717 5.04251 5.07399 5.15669 5.18219 5.24107 5.33580 5.39427 5.65290 5.75115 5.80210 6.07454 6.16703 6.18864 6.22330 6.25851 6.33756 6.36320 6.42627 6.45809 6.62843 6.71679 7.00755 7.16337 7.31382 7.37837 7.41521 7.57773 7.68424 7.85632 8.13740 8.57789 8.72356 9.02886 9.41631 10.89590 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002830 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.956301 B = 9890.392505 C =10807.905380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.698 5.698 14 C 0.540 3.460 15 O -0.540 6.540 16 C -0.103 4.103 17 C -0.090 4.090 18 C -0.110 4.110 19 C -0.108 4.108 20 C 0.074 3.926 21 O -0.255 6.255 22 C 0.121 3.879 23 C -0.191 4.191 24 C -0.080 4.080 25 C -0.155 4.155 26 C -0.086 4.086 27 C -0.147 4.147 28 C -0.085 4.085 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 5.749 16.337 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.420 6.420 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.128 4.128 19 C -0.126 4.126 20 C 0.032 3.968 21 O -0.167 6.167 22 C 0.078 3.922 23 C -0.209 4.209 24 C -0.099 4.099 25 C -0.173 4.173 26 C -0.104 4.104 27 C -0.166 4.166 28 C -0.104 4.104 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.221 0.779 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.265 5.807 15.449 21.175 hybrid contribution 1.420 -0.161 0.187 1.442 sum -11.845 5.646 15.636 20.412 Atomic orbital electron populations 1.21845 0.98340 0.98112 1.01235 1.21941 0.92620 0.99676 1.02380 1.18846 0.94335 0.89230 0.80732 0.93109 1.21209 0.90575 1.39222 1.06393 0.92064 1.24881 0.98651 0.94761 0.95332 1.69891 1.35169 1.37436 1.09353 0.86450 0.84794 0.78445 0.77435 1.20524 1.21044 1.19850 1.46468 1.14182 1.55275 1.18692 1.18078 0.83208 0.79565 0.86666 1.90759 1.51470 1.59934 1.39797 1.20245 0.94454 1.00441 0.95518 1.21529 0.99380 0.97523 0.92435 1.20977 0.95857 0.97909 0.98076 1.21245 0.94371 0.99578 0.97440 1.18527 0.84873 0.99657 0.93781 1.84378 1.11295 1.33917 1.87141 1.19198 0.86548 0.89247 0.97180 1.21411 1.00538 0.92428 1.06532 1.21010 0.91962 0.99873 0.97012 1.21111 0.97291 0.95219 1.03653 1.20954 0.97997 0.93357 0.98072 1.20430 0.89216 1.00747 1.06169 1.21571 0.96706 0.95177 0.96989 0.95777 0.93092 0.94360 0.94977 0.88165 0.92501 0.77866 0.84691 0.84592 0.84889 0.85197 0.85576 0.85824 0.85280 0.85084 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.15 0.32 -2.75 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.74 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -14.20 4.97 -55.87 -0.28 -14.47 16 14 C 0.54 10.76 6.34 -12.33 -0.08 10.69 16 15 O -0.54 -12.62 13.48 5.31 0.07 -12.55 16 16 C -0.10 -1.63 5.87 -104.99 -0.62 -2.25 16 17 C -0.09 -1.12 9.54 -39.17 -0.37 -1.49 16 18 C -0.11 -1.13 10.03 -39.66 -0.40 -1.53 16 19 C -0.11 -1.18 9.98 -39.35 -0.39 -1.57 16 20 C 0.07 0.98 4.73 -39.26 -0.19 0.79 16 21 O -0.26 -3.42 10.00 -3.54 -0.04 -3.46 16 22 C 0.12 1.53 6.54 -39.20 -0.26 1.27 16 23 C -0.19 -2.36 8.79 -39.43 -0.35 -2.71 16 24 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 25 C -0.15 -1.45 10.04 -39.56 -0.40 -1.85 16 26 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 27 C -0.15 -1.57 9.99 -39.42 -0.39 -1.96 16 28 C -0.09 -1.30 7.88 -39.01 -0.31 -1.60 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 32 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.39 6.74 6.57 -40.82 -0.27 6.47 16 36 H 0.14 1.48 6.40 -52.49 -0.34 1.14 16 37 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.13 1.68 6.18 -52.48 -0.32 1.35 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 2.36 7.65 -52.48 -0.40 1.95 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -30.44 365.12 -9.71 -40.15 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.66 Total: 9.85 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -4.92 Total: -16.56 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.35 Total: -38.21 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.04 Total: -16.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.44 -9.71 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183888418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.566 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds