Wall clock time and date at job start Tue Mar 31 2020 14:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47371 * 2 1 4 4 H 1.08991 * 109.47022 * 305.00219 * 3 2 1 5 5 C 1.50698 * 109.47011 * 185.00106 * 3 2 1 6 6 H 1.08007 * 119.99567 * 240.00124 * 5 3 2 7 7 C 1.37875 * 120.00176 * 60.00628 * 5 3 2 8 8 N 1.31514 * 119.99890 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47529 * 89.99334 * 9 7 5 11 11 H 1.48498 * 109.47199 * 209.99588 * 9 7 5 12 12 H 1.48504 * 109.47094 * 329.99087 * 9 7 5 13 13 N 1.46503 * 109.46595 * 65.00058 * 3 2 1 14 14 C 1.34772 * 120.00225 * 274.99797 * 13 3 2 15 15 O 1.21558 * 120.00015 * 0.02562 * 14 13 3 16 16 C 1.47855 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.39603 * 120.11853 * 359.72343 * 16 14 13 18 18 C 1.37976 * 119.97192 * 179.72435 * 17 16 14 19 19 C 1.38278 * 120.20482 * 0.55601 * 18 17 16 20 20 C 1.38829 * 120.24079 * 359.72091 * 19 18 17 21 21 O 1.35891 * 119.99252 * 180.02562 * 20 19 18 22 22 C 1.35882 * 117.99972 * 247.42819 * 21 20 19 23 23 C 1.38753 * 120.05975 * 5.84595 * 22 21 20 24 24 C 1.38140 * 119.94418 * 179.74322 * 23 22 21 25 25 C 1.38274 * 120.05690 * 0.50966 * 24 23 22 26 26 C 1.38262 * 120.11534 * 359.76174 * 25 24 23 27 27 C 1.38143 * 120.06052 * 359.97438 * 26 25 24 28 28 C 1.38521 * 120.02354 * 0.02562 * 20 19 18 29 29 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47212 * 59.99470 * 1 2 3 31 31 H 1.09001 * 109.46820 * 299.99531 * 1 2 3 32 32 H 1.09007 * 109.47305 * 120.00335 * 2 1 3 33 33 H 1.08996 * 109.47179 * 240.00176 * 2 1 3 34 34 H 0.96999 * 120.00000 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99879 * 95.00660 * 13 3 2 36 36 H 1.08000 * 120.01857 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.89366 * 180.25711 * 18 17 16 38 38 H 1.08006 * 119.87815 * 179.74538 * 19 18 17 39 39 H 1.08006 * 120.02817 * 359.96968 * 23 22 21 40 40 H 1.08004 * 119.96889 * 180.22911 * 24 23 22 41 41 H 1.07995 * 119.93751 * 179.74671 * 25 24 23 42 42 H 1.08004 * 119.97130 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.02689 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.10604 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3368 -2.1730 9 14 6.0049 0.8799 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3413 2.6319 0.4324 16 6 0.0443 3.3258 2.6303 17 6 0.9319 3.3594 3.7073 18 6 0.5662 3.9824 4.8828 19 6 -0.6824 4.5645 5.0024 20 6 -1.5742 4.5311 3.9389 21 8 -2.7997 5.1051 4.0617 22 6 -3.8880 4.2915 4.0628 23 6 -3.7256 2.9135 4.0633 24 6 -4.8337 2.0886 4.0699 25 6 -6.1039 2.6350 4.0653 26 6 -6.2685 4.0077 4.0591 27 6 -5.1638 4.8372 4.0580 28 6 -1.2151 3.9128 2.7524 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0616 -2.9496 35 1 2.2720 2.1231 1.9979 36 1 1.9061 2.9016 3.6191 37 1 1.2555 4.0114 5.7138 38 1 -0.9648 5.0472 5.9264 39 1 -2.7337 2.4862 4.0623 40 1 -4.7077 1.0159 4.0740 41 1 -6.9688 1.9882 4.0662 42 1 -7.2617 4.4320 4.0559 43 1 -5.2931 5.9094 4.0528 44 1 -1.9076 3.8864 1.9241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183888418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:11 Heat of formation + Delta-G solvation = -33.179290 kcal Electronic energy + Delta-G solvation = -26646.174423 eV Core-core repulsion = 22914.212758 eV Total energy + Delta-G solvation = -3731.961665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08575 -40.94869 -39.42846 -38.15827 -36.96465 -34.41596 -33.18469 -32.24115 -31.98016 -31.51618 -30.40975 -28.91892 -25.61079 -24.82426 -24.38680 -23.60544 -22.74205 -22.00182 -21.18297 -20.01991 -18.88856 -18.03376 -17.57805 -17.26144 -16.99426 -16.91219 -16.75857 -16.32438 -16.07516 -15.45604 -15.15118 -14.85842 -14.71364 -14.67965 -14.55231 -14.39281 -13.99554 -13.63060 -13.32414 -13.20120 -13.05038 -12.92294 -12.83843 -12.67265 -12.58202 -12.27006 -12.16777 -12.08600 -11.94075 -11.62489 -11.07695 -10.85211 -10.54575 -10.16799 -10.01179 -9.97646 -9.67112 -9.23542 -8.17008 -6.34757 -0.29382 0.01182 0.34370 0.41739 1.45072 1.45953 1.56187 1.75819 2.14561 2.32631 2.54693 2.76623 2.81216 3.12840 3.69894 3.79046 3.83770 3.92109 3.99001 4.06367 4.22976 4.27051 4.35586 4.44924 4.45775 4.52804 4.53329 4.68323 4.74006 4.84801 5.02849 5.02945 5.12952 5.17793 5.23602 5.25293 5.30078 5.40180 5.43500 5.51522 5.54612 5.56147 5.59290 5.76552 5.89299 5.90798 6.13947 6.47092 6.72168 6.89746 7.30582 7.48305 8.88595 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002830 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.956301 B = 9890.392505 C =10807.905380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.694 5.694 14 C 0.538 3.462 15 O -0.586 6.586 16 C -0.125 4.125 17 C -0.085 4.085 18 C -0.091 4.091 19 C -0.094 4.094 20 C 0.068 3.932 21 O -0.265 6.265 22 C 0.096 3.904 23 C -0.209 4.209 24 C -0.094 4.094 25 C -0.153 4.153 26 C -0.082 4.082 27 C -0.155 4.155 28 C -0.098 4.098 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 6.225 19.664 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.343 5.343 14 C 0.326 3.674 15 O -0.468 6.468 16 C -0.128 4.128 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.112 4.112 20 C 0.026 3.974 21 O -0.177 6.177 22 C 0.054 3.946 23 C -0.228 4.228 24 C -0.112 4.112 25 C -0.171 4.171 26 C -0.100 4.100 27 C -0.174 4.174 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.170 0.830 37 H 0.199 0.801 38 H 0.181 0.819 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.914 6.293 18.823 23.679 hybrid contribution 1.174 -0.264 -0.799 1.445 sum -11.740 6.029 18.023 22.339 Atomic orbital electron populations 1.21681 0.97237 0.99160 1.00058 1.21788 0.93505 0.99063 1.01549 1.18428 0.93908 0.89187 0.80990 0.98450 1.21558 0.91125 1.39084 1.06862 0.90754 1.25781 1.03398 0.94332 0.94956 1.70050 1.37138 1.38258 1.09904 0.85354 0.78977 0.78952 0.77117 1.19530 1.21429 1.18806 1.46172 1.14931 1.55319 1.17843 1.18708 0.82290 0.78704 0.87725 1.90728 1.52638 1.61518 1.41907 1.19859 0.95799 1.02497 0.94693 1.21754 0.99271 0.97298 0.92050 1.21437 0.95893 0.95481 0.98074 1.21664 0.93867 0.98190 0.97485 1.18662 0.85485 0.99541 0.93711 1.84344 1.11560 1.34382 1.87459 1.19487 0.86997 0.89420 0.98728 1.21433 1.00587 0.92829 1.07919 1.21279 0.92276 1.00506 0.97093 1.21495 0.97533 0.95917 1.02164 1.21383 0.98985 0.93215 0.96403 1.20763 0.88914 1.01846 1.05852 1.21368 0.96281 0.96751 0.97354 0.93418 0.95694 0.94118 0.93739 0.90778 0.92572 0.75928 0.82960 0.80063 0.81852 0.86545 0.84413 0.83075 0.82014 0.83764 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.30 2.24 44.25 0.10 14.40 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -52.23 11.29 21.45 0.24 -51.99 16 9 Si 0.97 41.57 29.54 68.60 2.03 43.59 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 13 N -0.69 -28.89 4.97 -448.97 -2.23 -31.12 16 14 C 0.54 22.50 6.34 86.79 0.55 23.05 16 15 O -0.59 -29.49 13.48 -3.90 -0.05 -29.54 16 16 C -0.13 -4.03 5.87 -20.10 -0.12 -4.15 16 17 C -0.09 -1.95 9.54 22.54 0.21 -1.73 16 18 C -0.09 -1.51 10.03 22.22 0.22 -1.29 16 19 C -0.09 -1.79 9.98 22.42 0.22 -1.56 16 20 C 0.07 1.79 4.73 22.48 0.11 1.90 16 21 O -0.26 -7.15 10.00 -35.56 -0.36 -7.50 16 22 C 0.10 2.44 6.54 22.52 0.15 2.59 16 23 C -0.21 -5.32 8.79 22.37 0.20 -5.12 16 24 C -0.09 -1.97 10.04 22.25 0.22 -1.75 16 25 C -0.15 -2.60 10.04 22.28 0.22 -2.37 16 26 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 27 C -0.16 -3.18 9.99 22.37 0.22 -2.96 16 28 C -0.10 -3.13 7.88 22.64 0.18 -2.95 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 31 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 32 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 34 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.40 13.83 6.57 -92.70 -0.61 13.22 16 36 H 0.15 2.90 6.40 -2.91 -0.02 2.88 16 37 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.12 3.18 6.18 -2.91 -0.02 3.16 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.11 4.16 7.65 -2.91 -0.02 4.14 16 Total: -1.00 -71.09 365.12 4.21 -66.88 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.42 Total: 30.80 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 4.17 Total: -21.12 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.99 Total: -83.11 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.41 Total: -37.04 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.09 4.21 -66.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183888418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.696 kcal (2) G-P(sol) polarization free energy of solvation -71.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds