Wall clock time and date at job start Tue Mar 31 2020 14:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 C 1.50701 * 109.47553 * 239.99645 * 2 1 3 5 5 H 1.08003 * 120.00409 * 240.00383 * 4 2 1 6 6 C 1.37877 * 119.99424 * 59.99638 * 4 2 1 7 7 N 1.31509 * 120.00413 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47018 * 90.00181 * 8 6 4 10 10 H 1.48494 * 109.47297 * 210.00321 * 8 6 4 11 11 H 1.48502 * 109.47053 * 330.00258 * 8 6 4 12 12 C 1.53009 * 109.47528 * 119.99946 * 2 1 3 13 13 O 1.45205 * 109.46534 * 300.00099 * 12 2 1 14 14 C 1.34713 * 116.99484 * 179.97438 * 13 12 2 15 15 O 1.21471 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.47738 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.39679 * 120.50848 * 359.72706 * 16 14 13 18 18 N 1.31679 * 120.82595 * 180.29796 * 17 16 14 19 19 C 1.31819 * 122.02155 * 359.94936 * 18 17 16 20 20 C 1.39412 * 120.92001 * 0.05096 * 19 18 17 21 21 C 1.48415 * 120.46176 * 179.97438 * 20 19 18 22 22 C 1.39326 * 120.11925 * 179.74229 * 21 20 19 23 23 C 1.38028 * 119.87573 * 179.69537 * 22 21 20 24 24 C 1.38323 * 120.11777 * 0.60790 * 23 22 21 25 25 C 1.38319 * 120.24434 * 359.66710 * 24 23 22 26 26 C 1.38021 * 120.11783 * 0.03068 * 25 24 23 27 27 C 1.39491 * 119.07421 * 359.97326 * 20 19 18 28 28 H 1.09002 * 109.46895 * 299.99890 * 1 2 3 29 29 H 1.08995 * 109.47480 * 60.00458 * 1 2 3 30 30 H 1.09003 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47738 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46813 * 299.99872 * 3 2 1 33 33 H 1.08998 * 109.47201 * 59.99723 * 3 2 1 34 34 H 0.96999 * 120.00396 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47174 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.46815 * 59.99424 * 12 2 1 37 37 H 1.08002 * 119.58639 * 0.24498 * 17 16 14 38 38 H 1.07997 * 119.54084 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.05971 * 359.97438 * 22 21 20 40 40 H 1.07999 * 119.93553 * 180.29953 * 23 22 21 41 41 H 1.07996 * 119.87234 * 179.69964 * 24 23 22 42 42 H 1.07995 * 119.93655 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.05527 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.91866 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0401 -0.7213 1.2493 13 8 1.5560 -0.0367 2.4348 14 6 1.9176 -0.5489 3.6272 15 8 2.6184 -1.5398 3.6752 16 6 1.4627 0.0954 4.8764 17 6 0.6622 1.2392 4.8336 18 7 0.2580 1.8219 5.9431 19 6 0.5839 1.3600 7.1339 20 6 1.3798 0.2232 7.2681 21 6 1.7410 -0.2877 8.6139 22 6 2.5324 -1.4275 8.7398 23 6 2.8705 -1.8947 9.9938 24 6 2.4148 -1.2407 11.1243 25 6 1.6242 -0.1120 11.0051 26 6 1.2852 0.3673 9.7560 27 6 1.8318 -0.4272 6.1199 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7094 1.1616 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.3717 1.6514 3.8785 38 1 0.2298 1.8694 8.0179 39 1 2.8843 -1.9419 7.8577 40 1 3.4879 -2.7753 10.0924 41 1 2.6778 -1.6125 12.1035 42 1 1.2708 0.3944 11.8911 43 1 0.6681 1.2489 9.6642 44 1 2.4502 -1.3099 6.1892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184781077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:42 Heat of formation + Delta-G solvation = -33.137512 kcal Electronic energy + Delta-G solvation = -26025.412094 eV Core-core repulsion = 22293.452240 eV Total energy + Delta-G solvation = -3731.959854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91332 -39.75580 -38.90876 -36.65219 -34.91548 -33.76462 -32.61426 -31.34939 -31.18180 -29.49859 -26.30432 -25.64160 -25.31124 -24.62450 -24.37513 -22.66653 -21.86927 -20.62008 -18.90223 -18.32189 -17.45917 -16.81841 -16.60292 -15.94230 -15.91672 -15.72550 -15.41451 -14.74940 -14.70512 -14.30655 -14.08456 -13.97510 -13.23517 -13.20596 -13.19915 -12.92727 -12.88980 -12.52121 -11.94350 -11.70909 -11.53444 -11.36013 -11.23746 -10.99563 -10.73156 -10.57304 -10.51951 -10.44403 -10.18490 -9.96361 -9.82422 -9.69313 -9.44585 -9.35825 -9.32999 -8.78683 -8.51201 -8.39535 -6.03857 -4.15606 0.14881 0.56177 1.02718 1.48054 2.66570 2.97447 3.26798 3.33880 3.37620 3.38674 3.76460 4.04457 4.19802 4.36181 4.41835 4.51939 4.56173 4.63180 4.76123 4.91623 4.97205 5.06825 5.20959 5.22637 5.33231 5.57041 5.64636 5.67193 5.85330 6.01004 6.04858 6.05428 6.13539 6.20497 6.29760 6.42336 6.57811 6.69010 6.94808 6.95657 7.11123 7.11473 7.37087 7.59892 7.61212 7.68280 8.03189 8.04541 8.16899 8.36408 8.84091 9.50008 10.97308 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.002240 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.643326 B =12496.585518 C =13205.159504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.085 3.915 13 O -0.341 6.341 14 C 0.505 3.495 15 O -0.512 6.512 16 C -0.163 4.163 17 C 0.161 3.839 18 N -0.485 5.485 19 C 0.135 3.865 20 C -0.113 4.113 21 C -0.039 4.039 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.009 4.009 28 H 0.017 0.983 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -0.240 25.249 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.013 3.987 13 O -0.256 6.256 14 C 0.348 3.652 15 O -0.403 6.403 16 C -0.167 4.167 17 C 0.004 3.996 18 N -0.192 5.192 19 C -0.022 4.022 20 C -0.115 4.115 21 C -0.040 4.040 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.034 4.034 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.220 0.344 24.975 24.979 hybrid contribution 1.005 -1.451 -0.846 1.958 sum 0.786 -1.108 24.130 24.168 Atomic orbital electron populations 1.21779 0.97230 0.99015 1.00751 1.18267 0.93488 0.93126 0.88159 1.21778 0.98136 0.98112 1.00753 1.20915 1.32062 1.12321 0.89741 0.92488 1.24857 0.94807 0.94906 0.98797 1.69821 1.36271 1.22477 1.23351 0.86535 0.79272 0.79377 0.82471 1.20638 1.21147 1.19916 1.23776 0.98368 0.95900 0.80692 1.86563 1.68934 1.55599 1.14535 1.20802 0.77670 0.81912 0.84808 1.90800 1.35777 1.25338 1.88381 1.20285 1.04423 0.99803 0.92147 1.23450 0.89005 0.89322 0.97843 1.67813 1.21921 1.31242 0.98213 1.23174 0.91588 0.91564 0.95901 1.19666 1.01219 0.97826 0.92754 1.18567 0.98504 0.95795 0.91085 1.21315 0.97575 0.95676 0.98162 1.21131 0.99872 1.00066 0.92234 1.21261 0.97844 0.95837 0.98730 1.21099 0.98407 0.96699 0.97262 1.21209 0.99910 0.99894 0.91769 1.21794 0.94037 0.97760 0.89788 0.96421 0.89661 0.95796 0.95786 0.89663 0.96415 0.92862 0.92275 0.92277 0.80445 0.82001 0.85451 0.85633 0.85907 0.85659 0.85484 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.11 37.15 0.30 -2.77 16 2 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 3 C -0.13 -3.07 8.11 37.16 0.30 -2.77 16 4 C -0.51 -13.50 8.01 -34.44 -0.28 -13.77 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.09 1.85 4.27 37.16 0.16 2.00 16 13 O -0.34 -6.60 8.15 -40.53 -0.33 -6.93 16 14 C 0.50 8.92 7.91 34.61 0.27 9.20 16 15 O -0.51 -10.06 16.20 -19.24 -0.31 -10.37 16 16 C -0.16 -2.35 5.89 -104.88 -0.62 -2.96 16 17 C 0.16 2.18 10.78 -17.08 -0.18 1.99 16 18 N -0.48 -6.15 10.33 -12.63 -0.13 -6.28 16 19 C 0.13 1.40 10.59 -17.12 -0.18 1.22 16 20 C -0.11 -1.20 5.89 -104.80 -0.62 -1.82 16 21 C -0.04 -0.36 5.88 -104.89 -0.62 -0.98 16 22 C -0.11 -0.97 9.44 -39.25 -0.37 -1.34 16 23 C -0.12 -0.86 10.03 -39.63 -0.40 -1.26 16 24 C -0.12 -0.80 10.04 -39.52 -0.40 -1.20 16 25 C -0.12 -0.78 10.03 -39.63 -0.40 -1.18 16 26 C -0.11 -0.84 9.44 -39.26 -0.37 -1.21 16 27 C -0.01 -0.11 9.07 -38.51 -0.35 -0.45 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 33 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 34 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.18 2.34 7.61 -52.49 -0.40 1.94 16 38 H 0.16 1.16 6.21 -52.49 -0.33 0.83 16 39 H 0.13 1.06 6.27 -52.49 -0.33 0.73 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.13 0.70 6.23 -52.49 -0.33 0.38 16 44 H 0.15 1.73 5.99 -52.49 -0.31 1.41 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -29.39 366.69 -9.29 -38.68 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.62 Total: 0.86 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.92 Total: -14.00 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.39 Total: -29.43 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.64 Total: -17.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.39 -9.29 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184781077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.543 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds