Wall clock time and date at job start Tue Mar 31 2020 16:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47110 * 2 1 4 4 C 1.50704 * 109.47396 * 240.00493 * 2 1 3 5 5 C 1.38228 * 119.99999 * 99.14088 * 4 2 1 6 6 C 1.38238 * 120.00101 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.38237 * 119.99926 * 0.02562 * 7 6 5 9 9 C 1.38237 * 119.99619 * 279.12320 * 4 2 1 10 10 N 1.46498 * 109.47428 * 120.00391 * 2 1 3 11 11 C 1.46501 * 120.00195 * 232.59547 * 10 2 1 12 12 C 1.50692 * 109.47308 * 96.36590 * 11 10 2 13 13 C 1.38165 * 120.02670 * 256.02244 * 12 11 10 14 14 C 1.38247 * 120.05845 * 179.97438 * 13 12 11 15 15 C 1.38290 * 120.10708 * 359.97438 * 14 13 12 16 16 C 1.38122 * 120.05831 * 0.02562 * 15 14 13 17 17 C 1.38707 * 120.03147 * 75.74685 * 12 11 10 18 18 O 1.35904 * 120.05656 * 0.02562 * 17 12 11 19 19 C 1.34775 * 119.99825 * 52.58812 * 10 2 1 20 20 O 1.21687 * 120.00488 * 298.54695 * 19 10 2 21 21 C 1.46382 * 119.99996 * 118.54749 * 19 10 2 22 22 H 1.08004 * 119.99941 * 171.67418 * 21 19 10 23 23 C 1.40040 * 119.99868 * 351.67227 * 21 19 10 24 24 N 1.30674 * 120.00114 * 357.11551 * 23 21 19 25 25 Si 1.86793 * 120.00003 * 177.10767 * 23 21 19 26 26 H 1.48501 * 109.47130 * 90.00305 * 25 23 21 27 27 H 1.48503 * 109.47412 * 210.00070 * 25 23 21 28 28 H 1.48505 * 109.47405 * 330.00351 * 25 23 21 29 29 H 1.09001 * 109.47021 * 60.00180 * 1 2 3 30 30 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47543 * 299.99273 * 1 2 3 32 32 H 1.08004 * 120.00593 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.00408 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.00248 * 179.72209 * 7 6 5 35 35 H 1.08003 * 120.00353 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.00582 * 359.97438 * 9 4 2 37 37 H 1.09001 * 109.47089 * 216.36708 * 11 10 2 38 38 H 1.09003 * 109.46861 * 336.36444 * 11 10 2 39 39 H 1.07998 * 119.97305 * 359.97401 * 13 12 11 40 40 H 1.07992 * 119.94891 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.96888 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.02577 * 179.97438 * 16 15 14 43 43 H 0.96695 * 114.00249 * 95.03898 * 18 17 12 44 44 H 0.96999 * 120.00069 * 185.02919 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.4421 0.0192 -2.3308 6 6 2.9034 -0.6323 -3.4594 7 6 2.9556 -2.0134 -3.4874 8 6 2.5458 -2.7429 -2.3870 9 6 2.0838 -2.0914 -1.2587 10 7 2.0184 -0.6907 1.1961 11 6 2.9891 -0.0348 2.0756 12 6 2.2650 0.6194 3.2239 13 6 2.0858 1.9893 3.2377 14 6 1.4210 2.5901 4.2905 15 6 0.9334 1.8219 5.3319 16 6 1.1099 0.4520 5.3228 17 6 1.7727 -0.1538 4.2649 18 8 1.9432 -1.5020 4.2512 19 6 1.5744 -1.9294 1.4874 20 8 0.3912 -2.1174 1.7005 21 6 2.5157 -3.0489 1.5474 22 1 2.1873 -4.0116 1.9104 23 6 3.8419 -2.8715 1.1341 24 7 4.2250 -1.7231 0.6422 25 14 5.0634 -4.2765 1.2862 26 1 5.0450 -5.0855 0.0410 27 1 6.4264 -3.7267 1.4991 28 1 4.6901 -5.1345 2.4394 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.4018 1.0983 -2.3089 33 1 3.2239 -0.0623 -4.3189 34 1 3.3118 -2.5225 -4.3707 35 1 2.5861 -3.8220 -2.4090 36 1 1.7644 -2.6614 -0.3988 37 1 3.6882 -0.7764 2.4622 38 1 3.5362 0.7216 1.5129 39 1 2.4653 2.5914 2.4254 40 1 1.2823 3.6610 4.2998 41 1 0.4140 2.2935 6.1531 42 1 0.7292 -0.1474 6.1365 43 1 2.7178 -1.8056 4.7440 44 1 5.1226 -1.6221 0.2887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186134852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:34 Heat of formation + Delta-G solvation = 0.923192 kcal Electronic energy + Delta-G solvation = -29175.848861 eV Core-core repulsion = 25445.365990 eV Total energy + Delta-G solvation = -3730.482871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.54297 -38.76594 -37.12278 -35.94270 -34.20132 -33.25849 -32.06633 -30.07910 -29.80941 -29.05822 -28.27986 -26.48317 -24.65515 -22.92957 -22.05923 -21.64506 -20.87313 -20.44007 -18.98932 -17.68781 -16.73904 -15.90329 -15.54945 -15.27867 -15.06670 -14.81737 -14.60234 -14.48835 -13.86027 -13.50601 -13.39907 -13.27929 -12.68871 -12.62076 -12.44163 -12.30896 -11.92936 -11.59755 -11.51123 -11.46900 -11.27927 -11.20015 -11.07463 -10.96175 -10.68022 -10.60659 -10.48207 -10.40394 -10.00612 -9.82277 -9.71175 -8.93612 -8.39717 -8.02509 -8.00883 -7.71043 -7.70437 -6.83588 -6.21990 -4.73230 1.76840 1.79610 2.23197 2.34719 3.01236 3.13440 3.17532 4.01304 4.06547 4.20164 4.69278 4.85644 5.03137 5.31008 5.34147 5.43846 5.52910 5.60058 5.62930 5.75422 5.78330 5.97215 6.01130 6.04946 6.24710 6.28962 6.32708 6.45712 6.48620 6.51316 6.56499 6.73767 6.79207 6.87754 6.89239 7.00370 7.11258 7.20369 7.20707 7.26968 7.30175 7.38492 7.50266 7.66903 7.95284 8.03287 8.33955 8.41002 8.71205 8.88952 9.59156 10.25664 10.56591 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.006161 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.053404 B = 4543.325153 C = 5761.836405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.213 3.787 3 H 0.064 0.936 4 C -0.063 4.063 5 C -0.125 4.125 6 C -0.140 4.140 7 C -0.137 4.137 8 C -0.133 4.133 9 C -0.069 4.069 10 N -0.632 5.632 11 C 0.216 3.784 12 C -0.121 4.121 13 C -0.102 4.102 14 C -0.141 4.141 15 C -0.118 4.118 16 C -0.159 4.159 17 C 0.132 3.868 18 O -0.468 6.468 19 C 0.615 3.385 20 O -0.610 6.610 21 C -0.522 4.522 22 H 0.077 0.923 23 C 0.088 3.912 24 N -0.781 5.781 25 Si 0.894 3.106 26 H -0.272 1.272 27 H -0.281 1.281 28 H -0.266 1.266 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.378 0.622 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 6.688 0.993 7.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.107 3.893 3 H 0.082 0.918 4 C -0.065 4.065 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.086 4.086 10 N -0.367 5.367 11 C 0.091 3.909 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.160 4.160 15 C -0.137 4.137 16 C -0.177 4.177 17 C 0.086 3.914 18 O -0.276 6.276 19 C 0.426 3.574 20 O -0.497 6.497 21 C -0.558 4.558 22 H 0.096 0.904 23 C -0.130 4.130 24 N -0.411 5.411 25 Si 0.720 3.280 26 H -0.198 1.198 27 H -0.206 1.206 28 H -0.190 1.190 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.172 0.828 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.233 0.767 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.180 6.667 0.742 6.811 hybrid contribution 1.453 -0.611 0.182 1.587 sum 2.633 6.056 0.924 6.668 Atomic orbital electron populations 1.22257 0.95734 1.03508 0.99487 1.19286 0.92567 0.93678 0.83728 0.91797 1.20370 0.97007 0.94426 0.94655 1.20819 1.01094 0.98620 0.93825 1.20776 1.02744 0.94407 0.97917 1.20891 1.02247 0.94200 0.98185 1.21051 1.00843 0.99089 0.94090 1.21893 0.94410 0.94715 0.97632 1.46210 1.49020 1.16736 1.24779 1.19492 0.89300 0.95329 0.86765 1.21608 0.99032 0.93535 0.98228 1.20941 0.99067 0.94092 0.97970 1.21002 1.00551 0.99265 0.95145 1.20834 1.00673 0.93441 0.98732 1.21441 1.02203 0.95077 0.99021 1.18438 0.96332 0.83624 0.92977 1.85119 1.49450 1.16669 1.76365 1.17450 0.86162 0.81117 0.72703 1.90463 1.21492 1.85626 1.52166 1.21713 0.93953 0.97563 1.42563 0.90434 1.25734 0.98483 0.95676 0.93117 1.69923 1.19067 1.22994 1.29149 0.86534 0.79619 0.82272 0.79613 1.19766 1.20603 1.18975 0.94279 0.90820 0.93031 0.87630 0.87745 0.87869 0.87571 0.82836 0.89362 0.92709 0.86460 0.86807 0.86747 0.86354 0.76747 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.57 37.16 0.32 -2.85 16 2 C 0.21 4.44 3.04 -69.08 -0.21 4.23 16 3 H 0.06 1.22 7.65 -51.93 -0.40 0.83 16 4 C -0.06 -1.31 4.41 -104.62 -0.46 -1.77 16 5 C -0.12 -2.29 9.67 -39.59 -0.38 -2.67 16 6 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 7 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 8 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 9 C -0.07 -1.54 6.95 -39.58 -0.27 -1.81 16 10 N -0.63 -14.20 1.20 -170.45 -0.20 -14.40 16 11 C 0.22 4.41 3.78 -5.20 -0.02 4.39 16 12 C -0.12 -2.29 5.45 -104.48 -0.57 -2.86 16 13 C -0.10 -1.66 9.66 -39.60 -0.38 -2.04 16 14 C -0.14 -2.06 10.04 -39.56 -0.40 -2.46 16 15 C -0.12 -1.74 10.04 -39.60 -0.40 -2.14 16 16 C -0.16 -2.64 9.99 -39.43 -0.39 -3.04 16 17 C 0.13 2.52 6.55 -39.22 -0.26 2.27 16 18 O -0.47 -9.47 10.91 -19.44 -0.21 -9.68 16 19 C 0.61 15.76 2.00 -12.98 -0.03 15.74 16 20 O -0.61 -17.82 15.48 5.20 0.08 -17.74 16 21 C -0.52 -13.20 7.74 -35.63 -0.28 -13.48 16 22 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 23 C 0.09 2.00 4.01 -17.37 -0.07 1.93 16 24 N -0.78 -17.39 7.38 55.55 0.41 -16.98 16 25 Si 0.89 18.16 29.56 -169.99 -5.03 13.13 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.76 6.36 -51.93 -0.33 1.43 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.69 8.04 -52.48 -0.42 1.27 16 33 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.15 3.91 3.60 -52.49 -0.19 3.72 16 37 H 0.09 1.93 5.81 -51.93 -0.30 1.63 16 38 H 0.05 1.06 7.68 -51.93 -0.40 0.67 16 39 H 0.12 1.70 8.01 -52.49 -0.42 1.28 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.38 5.88 9.06 45.56 0.41 6.29 16 44 H 0.27 5.88 8.30 -40.82 -0.34 5.54 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -29.30 354.88 -9.57 -38.87 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -4.98 Total: 16.73 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -4.99 Total: -15.27 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.21 Total: -31.39 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.13 Total: -27.42 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.30 -9.57 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186134852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.794 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds