Wall clock time and date at job start Tue Mar 31 2020 16:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47110 * 2 1 4 4 C 1.50704 * 109.47396 * 240.00493 * 2 1 3 5 5 C 1.38228 * 119.99999 * 99.14088 * 4 2 1 6 6 C 1.38238 * 120.00101 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.38237 * 119.99926 * 0.02562 * 7 6 5 9 9 C 1.38237 * 119.99619 * 279.12320 * 4 2 1 10 10 N 1.46498 * 109.47428 * 120.00391 * 2 1 3 11 11 C 1.46501 * 120.00195 * 232.59547 * 10 2 1 12 12 C 1.50692 * 109.47308 * 96.36590 * 11 10 2 13 13 C 1.38165 * 120.02670 * 256.02244 * 12 11 10 14 14 C 1.38247 * 120.05845 * 179.97438 * 13 12 11 15 15 C 1.38290 * 120.10708 * 359.97438 * 14 13 12 16 16 C 1.38122 * 120.05831 * 0.02562 * 15 14 13 17 17 C 1.38707 * 120.03147 * 75.74685 * 12 11 10 18 18 O 1.35904 * 120.05656 * 0.02562 * 17 12 11 19 19 C 1.34775 * 119.99825 * 52.58812 * 10 2 1 20 20 O 1.21687 * 120.00488 * 298.54695 * 19 10 2 21 21 C 1.46382 * 119.99996 * 118.54749 * 19 10 2 22 22 H 1.08004 * 119.99941 * 171.67418 * 21 19 10 23 23 C 1.40040 * 119.99868 * 351.67227 * 21 19 10 24 24 N 1.30674 * 120.00114 * 357.11551 * 23 21 19 25 25 Si 1.86793 * 120.00003 * 177.10767 * 23 21 19 26 26 H 1.48501 * 109.47130 * 90.00305 * 25 23 21 27 27 H 1.48503 * 109.47412 * 210.00070 * 25 23 21 28 28 H 1.48505 * 109.47405 * 330.00351 * 25 23 21 29 29 H 1.09001 * 109.47021 * 60.00180 * 1 2 3 30 30 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47543 * 299.99273 * 1 2 3 32 32 H 1.08004 * 120.00593 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.00408 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.00248 * 179.72209 * 7 6 5 35 35 H 1.08003 * 120.00353 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.00582 * 359.97438 * 9 4 2 37 37 H 1.09001 * 109.47089 * 216.36708 * 11 10 2 38 38 H 1.09003 * 109.46861 * 336.36444 * 11 10 2 39 39 H 1.07998 * 119.97305 * 359.97401 * 13 12 11 40 40 H 1.07992 * 119.94891 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.96888 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.02577 * 179.97438 * 16 15 14 43 43 H 0.96695 * 114.00249 * 95.03898 * 18 17 12 44 44 H 0.96999 * 120.00069 * 185.02919 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.4421 0.0192 -2.3308 6 6 2.9034 -0.6323 -3.4594 7 6 2.9556 -2.0134 -3.4874 8 6 2.5458 -2.7429 -2.3870 9 6 2.0838 -2.0914 -1.2587 10 7 2.0184 -0.6907 1.1961 11 6 2.9891 -0.0348 2.0756 12 6 2.2650 0.6194 3.2239 13 6 2.0858 1.9893 3.2377 14 6 1.4210 2.5901 4.2905 15 6 0.9334 1.8219 5.3319 16 6 1.1099 0.4520 5.3228 17 6 1.7727 -0.1538 4.2649 18 8 1.9432 -1.5020 4.2512 19 6 1.5744 -1.9294 1.4874 20 8 0.3912 -2.1174 1.7005 21 6 2.5157 -3.0489 1.5474 22 1 2.1873 -4.0116 1.9104 23 6 3.8419 -2.8715 1.1341 24 7 4.2250 -1.7231 0.6422 25 14 5.0634 -4.2765 1.2862 26 1 5.0450 -5.0855 0.0410 27 1 6.4264 -3.7267 1.4991 28 1 4.6901 -5.1345 2.4394 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.4018 1.0983 -2.3089 33 1 3.2239 -0.0623 -4.3189 34 1 3.3118 -2.5225 -4.3707 35 1 2.5861 -3.8220 -2.4090 36 1 1.7644 -2.6614 -0.3988 37 1 3.6882 -0.7764 2.4622 38 1 3.5362 0.7216 1.5129 39 1 2.4653 2.5914 2.4254 40 1 1.2823 3.6610 4.2998 41 1 0.4140 2.2935 6.1531 42 1 0.7292 -0.1474 6.1365 43 1 2.7178 -1.8056 4.7440 44 1 5.1226 -1.6221 0.2887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186134852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:33 Heat of formation + Delta-G solvation = -14.740516 kcal Electronic energy + Delta-G solvation = -29176.528090 eV Core-core repulsion = 25445.365990 eV Total energy + Delta-G solvation = -3731.162100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05800 -40.22442 -38.80262 -37.35268 -36.02511 -35.06820 -33.55304 -31.57705 -31.22973 -30.42574 -29.89829 -28.31263 -26.21010 -24.56111 -23.36728 -23.11149 -22.38227 -21.94719 -20.74731 -19.10304 -18.44759 -17.44301 -17.11802 -16.75547 -16.67396 -16.34803 -16.08415 -15.92386 -15.53675 -15.17393 -14.94680 -14.61894 -14.29719 -14.12243 -13.94712 -13.82326 -13.39851 -13.19583 -13.16296 -12.93838 -12.80326 -12.73252 -12.67607 -12.63265 -12.39860 -12.24064 -12.15508 -12.07835 -11.56081 -11.42260 -11.13683 -10.70290 -9.75324 -9.65361 -9.49392 -9.34980 -9.21862 -8.58570 -8.00855 -6.66709 0.48945 0.51422 0.74907 0.86303 1.33929 1.42897 1.50481 2.27656 2.33957 2.80748 3.16347 3.39809 3.54737 3.58415 4.04830 4.09880 4.16267 4.26127 4.30874 4.33604 4.47633 4.53093 4.56087 4.64251 4.72934 4.81054 4.89620 4.91579 5.01663 5.09919 5.13613 5.20543 5.36595 5.39019 5.43585 5.49753 5.55035 5.60281 5.66562 5.79784 5.81582 5.95460 6.10915 6.12748 6.16322 6.34571 6.44766 6.95182 7.05158 7.11488 7.75696 8.41016 8.66935 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.006161 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.053404 B = 4543.325153 C = 5761.836405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.208 3.792 3 H 0.087 0.913 4 C -0.079 4.079 5 C -0.123 4.123 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.150 4.150 9 C -0.097 4.097 10 N -0.633 5.633 11 C 0.224 3.776 12 C -0.147 4.147 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.111 4.111 16 C -0.171 4.171 17 C 0.101 3.899 18 O -0.497 6.497 19 C 0.621 3.379 20 O -0.664 6.664 21 C -0.547 4.547 22 H 0.047 0.953 23 C 0.072 3.928 24 N -0.768 5.768 25 Si 0.948 3.052 26 H -0.275 1.275 27 H -0.264 1.264 28 H -0.275 1.275 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.127 0.873 43 H 0.388 0.612 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 9.824 -0.418 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.103 3.897 3 H 0.105 0.895 4 C -0.080 4.080 5 C -0.142 4.142 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.115 4.115 10 N -0.367 5.367 11 C 0.100 3.900 12 C -0.150 4.150 13 C -0.122 4.122 14 C -0.152 4.152 15 C -0.130 4.130 16 C -0.189 4.189 17 C 0.056 3.944 18 O -0.307 6.307 19 C 0.434 3.566 20 O -0.556 6.556 21 C -0.582 4.582 22 H 0.065 0.935 23 C -0.148 4.148 24 N -0.397 5.397 25 Si 0.772 3.228 26 H -0.200 1.200 27 H -0.188 1.188 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.145 0.855 43 H 0.244 0.756 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.811 9.842 -0.672 10.258 hybrid contribution 0.965 -1.538 0.596 1.911 sum 3.776 8.305 -0.076 9.123 Atomic orbital electron populations 1.22098 0.96283 1.01063 1.00224 1.19461 0.92232 0.94597 0.83381 0.89533 1.20380 0.98183 0.93899 0.95588 1.21140 0.99921 1.00056 0.93074 1.21231 1.00858 0.94312 0.98569 1.21232 1.00938 0.94832 0.98091 1.21166 1.01616 0.99430 0.94583 1.21629 0.96759 0.95583 0.97494 1.46071 1.49198 1.15918 1.25559 1.19378 0.88874 0.94721 0.87072 1.21521 1.00675 0.94918 0.97860 1.21202 0.98893 0.92950 0.99198 1.21436 0.98735 1.01159 0.93902 1.21280 0.99558 0.92465 0.99650 1.21640 1.02098 0.96452 0.98719 1.18794 0.98002 0.83145 0.94453 1.85086 1.50385 1.18174 1.77022 1.17388 0.85186 0.82234 0.71807 1.90415 1.23524 1.86597 1.55064 1.21557 0.95679 0.96561 1.44425 0.93498 1.26002 0.98519 0.97693 0.92540 1.69945 1.19251 1.23350 1.27128 0.85712 0.78337 0.79840 0.78867 1.20043 1.18818 1.19929 0.91308 0.94823 0.94215 0.84721 0.83810 0.84759 0.87688 0.86800 0.91713 0.91761 0.84479 0.82990 0.83237 0.85503 0.75557 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 8.57 71.98 0.62 -5.30 16 2 C 0.21 8.69 3.04 44.25 0.13 8.83 16 3 H 0.09 3.16 7.65 -2.39 -0.02 3.14 16 4 C -0.08 -3.24 4.41 -19.87 -0.09 -3.32 16 5 C -0.12 -4.13 9.67 22.27 0.22 -3.92 16 6 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 7 C -0.13 -4.36 10.05 22.27 0.22 -4.13 16 8 C -0.15 -6.00 10.05 22.27 0.22 -5.78 16 9 C -0.10 -4.42 6.95 22.27 0.15 -4.27 16 10 N -0.63 -29.39 1.20 -811.39 -0.97 -30.36 16 11 C 0.22 9.31 3.78 85.63 0.32 9.63 16 12 C -0.15 -5.61 5.45 -19.77 -0.11 -5.72 16 13 C -0.10 -3.18 9.66 22.25 0.22 -2.96 16 14 C -0.13 -3.48 10.04 22.28 0.22 -3.25 16 15 C -0.11 -2.99 10.04 22.25 0.22 -2.77 16 16 C -0.17 -5.64 9.99 22.37 0.22 -5.42 16 17 C 0.10 4.00 6.55 22.50 0.15 4.15 16 18 O -0.50 -21.69 10.91 -92.47 -1.01 -22.70 16 19 C 0.62 34.01 2.00 86.36 0.17 34.18 16 20 O -0.66 -41.99 15.48 -4.31 -0.07 -42.06 16 21 C -0.55 -29.70 7.74 24.83 0.19 -29.51 16 22 H 0.05 2.74 7.85 -2.91 -0.02 2.72 16 23 C 0.07 3.38 4.01 85.30 0.34 3.72 16 24 N -0.77 -34.49 7.38 21.83 0.16 -34.33 16 25 Si 0.95 38.12 29.56 68.60 2.03 40.14 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.03 1.69 6.36 -2.38 -0.02 1.68 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.13 3.68 8.04 -2.91 -0.02 3.66 16 33 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.11 6.21 3.60 -2.91 -0.01 6.20 16 37 H 0.06 2.95 5.81 -2.39 -0.01 2.93 16 38 H 0.06 2.46 7.68 -2.39 -0.02 2.44 16 39 H 0.14 3.55 8.01 -2.91 -0.02 3.53 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.39 13.43 9.06 -74.06 -0.67 12.75 16 44 H 0.28 11.77 8.30 -92.71 -0.77 11.00 16 Total: -1.00 -68.90 354.88 4.16 -64.74 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: 0.35 Total: 44.16 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.66 Total: -19.60 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.81 Total: -64.69 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -1.08 Total: -64.76 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.14 kcal Total: -68.90 4.16 -64.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186134852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.998 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds