Wall clock time and date at job start Tue Mar 31 2020 14:28:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46930 * 2 1
4 4 H 1.09003 * 109.46660 * 178.47428 * 3 2 1
5 5 C 1.50696 * 109.47059 * 298.47430 * 3 2 1
6 6 H 1.08005 * 120.00155 * 120.00300 * 5 3 2
7 7 C 1.37880 * 120.00342 * 300.00027 * 5 3 2
8 8 N 1.31516 * 119.99358 * 0.02562 * 7 5 3
9 9 Si 1.86799 * 120.00274 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.46801 * 60.00219 * 9 7 5
11 11 H 1.48498 * 109.47059 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47211 * 300.00512 * 9 7 5
13 13 N 1.46500 * 109.47264 * 58.47467 * 3 2 1
14 14 S 1.65601 * 119.99804 * 96.25812 * 13 3 2
15 15 O 1.42101 * 106.40276 * 311.68856 * 14 13 3
16 16 O 1.42101 * 106.39964 * 178.77308 * 14 13 3
17 17 C 1.76199 * 107.21880 * 65.23157 * 14 13 3
18 18 C 1.38240 * 120.00070 * 89.99859 * 17 14 13
19 19 C 1.38228 * 119.99957 * 179.97438 * 18 17 14
20 20 C 1.38239 * 119.99938 * 0.02562 * 19 18 17
21 21 C 1.50706 * 119.99855 * 179.97438 * 20 19 18
22 22 C 1.52998 * 109.46937 * 89.99976 * 21 20 19
23 23 C 1.52999 * 109.47110 * 185.00085 * 22 21 20
24 24 C 1.52997 * 109.47182 * 65.00050 * 22 21 20
25 25 C 1.38235 * 120.00060 * 0.24971 * 20 19 18
26 26 C 1.38234 * 119.99852 * 269.97820 * 17 14 13
27 27 H 1.09001 * 109.46985 * 175.71809 * 1 2 3
28 28 H 1.09005 * 109.47434 * 295.71458 * 1 2 3
29 29 H 1.09004 * 109.47138 * 55.71766 * 1 2 3
30 30 H 1.08993 * 109.47401 * 240.00256 * 2 1 3
31 31 H 1.08999 * 109.47055 * 119.99679 * 2 1 3
32 32 H 0.97005 * 119.99626 * 179.97438 * 8 7 5
33 33 H 0.96998 * 120.00155 * 276.26347 * 13 3 2
34 34 H 1.07995 * 119.99608 * 359.97438 * 18 17 14
35 35 H 1.07994 * 120.00332 * 179.97438 * 19 18 17
36 36 H 1.08995 * 109.47077 * 330.00025 * 21 20 19
37 37 H 1.08998 * 109.46858 * 209.99905 * 21 20 19
38 38 H 1.09001 * 109.47363 * 304.99893 * 22 21 20
39 39 H 1.09003 * 109.46891 * 299.99573 * 23 22 21
40 40 H 1.08988 * 109.47192 * 59.99774 * 23 22 21
41 41 H 1.08995 * 109.47155 * 180.02562 * 23 22 21
42 42 H 1.09003 * 109.47527 * 59.99993 * 24 22 21
43 43 H 1.09001 * 109.47216 * 179.97438 * 24 22 21
44 44 H 1.09004 * 109.47183 * 299.99796 * 24 22 21
45 45 H 1.08006 * 119.99898 * 179.72520 * 25 20 19
46 46 H 1.08005 * 120.00116 * 359.97438 * 26 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1297 1.4426 0.0274
5 6 1.5687 2.1419 -1.2489
6 1 0.9456 3.0208 -1.1733
7 6 1.9331 1.6598 -2.4882
8 7 2.6915 0.5893 -2.5803
9 14 1.3484 2.5263 -4.0364
10 1 1.8428 3.9266 -4.0366
11 1 1.8732 1.8154 -5.2298
12 1 -0.1362 2.5256 -4.0733
13 7 1.5218 2.1437 1.1774
14 16 2.4496 2.2648 2.5437
15 8 2.9427 0.9592 2.8110
16 8 1.6883 3.0148 3.4804
17 6 3.8509 3.2524 2.1369
18 6 3.7998 4.6245 2.2980
19 6 4.8993 5.3992 1.9793
20 6 6.0498 4.8020 1.4991
21 6 7.2484 5.6467 1.1511
22 6 8.1444 5.7925 2.3826
23 6 9.2946 6.7504 2.0660
24 6 8.7112 4.4240 2.7658
25 6 6.0990 3.4306 1.3326
26 6 5.0015 2.6552 1.6571
27 1 -0.3633 -1.0248 -0.0767
28 1 -0.3634 0.4459 0.9259
29 1 -0.3633 0.5789 -0.8492
30 1 1.8934 -0.5137 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 2.9475 0.2499 -3.4522
33 1 0.6354 2.5369 1.1566
34 1 2.9008 5.0910 2.6727
35 1 4.8593 6.4711 2.1047
36 1 6.9160 6.6322 0.8249
37 1 7.8093 5.1683 0.3482
38 1 7.5596 6.1888 3.2127
39 1 9.8796 6.3540 1.2360
40 1 8.8909 7.7252 1.7930
41 1 9.9332 6.8539 2.9432
42 1 9.2961 4.0276 1.9358
43 1 9.3499 4.5279 3.6429
44 1 7.8918 3.7415 2.9914
45 1 6.9964 2.9645 0.9532
46 1 5.0417 1.5832 1.5320
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186428273.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:28:37
Heat of formation + Delta-G solvation = -80.558255 kcal
Electronic energy + Delta-G solvation = -26278.121339 eV
Core-core repulsion = 22679.549119 eV
Total energy + Delta-G solvation = -3598.572220 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-39.45556 -36.72687 -36.34597 -35.93101 -35.26148 -32.20110 -31.62307 -30.87441
-30.28096 -27.35530 -26.76660 -26.36023 -23.55900 -22.68097 -22.01936 -20.14898
-20.01906 -18.85382 -17.47660 -17.15009 -16.18477 -15.81791 -15.50803 -15.12015
-14.75924 -14.49052 -14.34088 -14.18279 -13.63035 -13.39043 -13.25085 -13.10194
-12.74241 -12.61119 -12.41816 -12.19994 -12.15603 -11.86195 -11.68514 -11.52916
-11.45850 -11.21059 -11.07775 -11.01420 -10.98807 -10.88071 -10.80367 -10.60592
-10.46954 -10.26287 -9.99634 -9.67074 -9.14749 -8.90877 -8.79407 -8.58736
-8.21971 -6.13503 -4.20600 0.92575 1.19345 1.52923 3.24239 3.29738
3.31567 3.54414 3.86630 4.33958 4.35698 4.56650 4.63236 4.75151
4.80500 5.05524 5.10449 5.12164 5.18073 5.37940 5.43106 5.46400
5.51113 5.63301 5.68922 5.71101 5.80875 5.85417 5.99565 6.10782
6.11630 6.17644 6.28566 6.34330 6.37040 6.42697 6.55623 6.60827
6.65697 7.04621 7.05327 7.28819 7.45666 7.52642 7.67596 7.83262
8.04916 8.28154 8.81151 9.44541 10.91593
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.012022 B = 0.004302 C = 0.003540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2328.448121 B = 6506.723103 C = 7907.002319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.136 4.136
3 C 0.280 3.720
4 H 0.041 0.959
5 C -0.520 4.520
6 H 0.063 0.937
7 C 0.067 3.933
8 N -0.885 5.885
9 Si 0.896 3.104
10 H -0.278 1.278
11 H -0.287 1.287
12 H -0.276 1.276
13 N -1.098 6.098
14 S 2.688 3.312
15 O -0.964 6.964
16 O -0.985 6.985
17 C -0.668 4.668
18 C -0.017 4.017
19 C -0.145 4.145
20 C -0.032 4.032
21 C -0.083 4.083
22 C -0.091 4.091
23 C -0.147 4.147
24 C -0.154 4.154
25 C -0.138 4.138
26 C -0.008 4.008
27 H 0.025 0.975
28 H 0.030 0.970
29 H 0.062 0.938
30 H 0.100 0.900
31 H 0.032 0.968
32 H 0.264 0.736
33 H 0.409 0.591
34 H 0.135 0.865
35 H 0.125 0.875
36 H 0.075 0.925
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.055 0.945
40 H 0.054 0.946
41 H 0.054 0.946
42 H 0.055 0.945
43 H 0.052 0.948
44 H 0.062 0.938
45 H 0.128 0.872
46 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.050 8.799 7.256 14.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.176 4.176
3 C 0.176 3.824
4 H 0.059 0.941
5 C -0.560 4.560
6 H 0.081 0.919
7 C -0.136 4.136
8 N -0.523 5.523
9 Si 0.724 3.276
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.202 1.202
13 N -0.859 5.859
14 S 2.777 3.223
15 O -0.954 6.954
16 O -0.975 6.975
17 C -0.754 4.754
18 C -0.036 4.036
19 C -0.163 4.163
20 C -0.032 4.032
21 C -0.120 4.120
22 C -0.109 4.109
23 C -0.204 4.204
24 C -0.211 4.211
25 C -0.156 4.156
26 C -0.028 4.028
27 H 0.044 0.956
28 H 0.049 0.951
29 H 0.081 0.919
30 H 0.118 0.882
31 H 0.050 0.950
32 H 0.074 0.926
33 H 0.243 0.757
34 H 0.153 0.847
35 H 0.143 0.857
36 H 0.093 0.907
37 H 0.095 0.905
38 H 0.090 0.910
39 H 0.074 0.926
40 H 0.073 0.927
41 H 0.074 0.926
42 H 0.074 0.926
43 H 0.072 0.928
44 H 0.081 0.919
45 H 0.146 0.854
46 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 9.178 8.219 7.923 14.648
hybrid contribution -0.211 1.053 -1.516 1.858
sum 8.967 9.272 6.407 14.402
Atomic orbital electron populations
1.21568 0.97801 0.98780 1.00644 1.21968 0.94942 0.98977 1.01702
1.18551 0.93787 0.88678 0.81377 0.94142 1.21190 1.32607 1.12241
0.89918 0.91922 1.24867 0.94902 0.94917 0.98906 1.69852 1.35641
1.22143 1.24702 0.86598 0.79154 0.79610 0.82285 1.20332 1.21234
1.20152 1.55511 1.28036 1.70523 1.31813 1.01863 0.73457 0.73859
0.73112 1.93560 1.81365 1.36664 1.83824 1.93512 1.69879 1.73355
1.60737 1.31081 1.19018 1.08448 1.16862 1.20828 0.98375 0.91703
0.92676 1.21047 0.93344 0.99784 1.02167 1.20091 0.94710 0.94146
0.94259 1.20805 0.93717 0.99430 0.98093 1.21075 0.96106 0.96350
0.97405 1.21846 0.98004 0.98987 1.01572 1.21956 1.01175 0.96772
1.01196 1.21120 0.99034 0.93302 1.02173 1.20966 0.91010 1.00508
0.90271 0.95552 0.95061 0.91945 0.88226 0.94965 0.92568 0.75680
0.84674 0.85669 0.90652 0.90508 0.91026 0.92583 0.92682 0.92647
0.92581 0.92848 0.91902 0.85444 0.84221
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.73 9.51 37.16 0.35 -2.37 16
2 C -0.14 -3.16 5.69 -26.73 -0.15 -3.31 16
3 C 0.28 6.49 2.46 -69.08 -0.17 6.32 16
4 H 0.04 0.99 7.26 -51.93 -0.38 0.62 16
5 C -0.52 -12.93 7.50 -34.44 -0.26 -13.19 16
6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16
7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16
8 N -0.89 -23.42 11.31 55.43 0.63 -22.79 16
9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16
10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
13 N -1.10 -21.84 4.75 -5.88 -0.03 -21.86 16
14 S 2.69 51.20 5.64 -107.50 -0.61 50.60 16
15 O -0.96 -20.58 16.69 -57.17 -0.95 -21.53 16
16 O -0.98 -19.57 17.28 -57.17 -0.99 -20.56 16
17 C -0.67 -11.71 5.84 -39.58 -0.23 -11.94 16
18 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16
19 C -0.14 -1.96 9.70 -39.58 -0.38 -2.35 16
20 C -0.03 -0.42 4.70 -104.62 -0.49 -0.91 16
21 C -0.08 -0.84 4.84 -27.88 -0.13 -0.97 16
22 C -0.09 -0.81 2.91 -90.62 -0.26 -1.07 16
23 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16
24 C -0.15 -1.41 8.78 37.16 0.33 -1.08 16
25 C -0.14 -1.99 7.98 -39.58 -0.32 -2.30 16
26 C -0.01 -0.14 8.92 -39.58 -0.35 -0.49 16
27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16
29 H 0.06 1.36 7.12 -51.93 -0.37 0.99 16
30 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16
31 H 0.03 0.73 7.80 -51.93 -0.40 0.33 16
32 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16
33 H 0.41 7.44 8.68 -34.47 -0.30 7.14 16
34 H 0.14 1.92 7.62 -52.49 -0.40 1.52 16
35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16
36 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16
37 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16
38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.05 0.38 8.14 -51.94 -0.42 -0.04 16
41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
44 H 0.06 0.66 6.28 -51.93 -0.33 0.33 16
45 H 0.13 1.56 8.05 -52.48 -0.42 1.14 16
46 H 0.14 2.36 7.62 -52.48 -0.40 1.96 16
LS Contribution 380.80 15.07 5.74 5.74
Total: -1.00 -29.72 380.80 -10.91 -40.64
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: -7.47 Total: 8.15 kcal
Atomic # 6 Polarization: -31.23 SS G_CDS: -2.21 Total: -33.43 kcal
Atomic # 7 Polarization: -45.26 SS G_CDS: 0.60 Total: -44.66 kcal
Atomic # 8 Polarization: -40.15 SS G_CDS: -1.94 Total: -42.09 kcal
Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal
Atomic # 16 Polarization: 51.20 SS G_CDS: -0.61 Total: 50.60 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -29.72 -10.91 -40.64 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186428273.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.923 kcal
(2) G-P(sol) polarization free energy of solvation -29.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds