Wall clock time and date at job start Tue Mar 31 2020 14:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46971 * 2 1 4 4 H 1.09002 * 109.46876 * 181.29233 * 3 2 1 5 5 C 1.50704 * 109.46904 * 301.28556 * 3 2 1 6 6 H 1.08001 * 119.99767 * 114.81900 * 5 3 2 7 7 C 1.37882 * 120.00194 * 294.81188 * 5 3 2 8 8 N 1.31508 * 119.99887 * 354.27943 * 7 5 3 9 9 Si 1.86800 * 119.99932 * 174.27559 * 7 5 3 10 10 H 1.48496 * 109.47227 * 270.00525 * 9 7 5 11 11 H 1.48500 * 109.46828 * 30.00222 * 9 7 5 12 12 H 1.48493 * 109.46932 * 150.00149 * 9 7 5 13 13 N 1.46497 * 109.47386 * 61.28811 * 3 2 1 14 14 S 1.65605 * 120.00044 * 95.14802 * 13 3 2 15 15 O 1.42093 * 106.39957 * 178.58590 * 14 13 3 16 16 O 1.42105 * 106.39847 * 311.50371 * 14 13 3 17 17 C 1.76199 * 107.21718 * 65.04579 * 14 13 3 18 18 C 1.38234 * 119.99798 * 269.72618 * 17 14 13 19 19 C 1.38236 * 120.00216 * 179.76846 * 18 17 14 20 20 C 1.38245 * 119.99515 * 0.50649 * 19 18 17 21 21 C 1.50696 * 119.99956 * 179.72517 * 20 19 18 22 22 C 1.53003 * 109.46908 * 240.02228 * 21 20 19 23 23 C 1.52998 * 109.47075 * 0.02562 * 21 20 19 24 24 C 1.52993 * 109.47129 * 120.02045 * 21 20 19 25 25 C 1.38236 * 119.99671 * 359.74753 * 20 19 18 26 26 C 1.38228 * 119.99934 * 90.00192 * 17 14 13 27 27 H 1.08996 * 109.46951 * 305.11655 * 1 2 3 28 28 H 1.09003 * 109.46987 * 65.12212 * 1 2 3 29 29 H 1.08998 * 109.46776 * 185.11669 * 1 2 3 30 30 H 1.09001 * 109.46962 * 239.99592 * 2 1 3 31 31 H 1.09004 * 109.46900 * 119.99617 * 2 1 3 32 32 H 0.97003 * 120.00267 * 355.51020 * 8 7 5 33 33 H 0.96996 * 119.99794 * 275.14564 * 13 3 2 34 34 H 1.08005 * 120.00117 * 359.97438 * 18 17 14 35 35 H 1.07998 * 120.00514 * 180.23360 * 19 18 17 36 36 H 1.09003 * 109.46999 * 60.00132 * 22 21 20 37 37 H 1.09002 * 109.46808 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47324 * 299.99989 * 22 21 20 39 39 H 1.08997 * 109.47351 * 60.00352 * 23 21 20 40 40 H 1.09002 * 109.47362 * 180.02562 * 23 21 20 41 41 H 1.09003 * 109.47418 * 300.00227 * 23 21 20 42 42 H 1.09002 * 109.47349 * 60.00078 * 24 21 20 43 43 H 1.09003 * 109.47450 * 179.97438 * 24 21 20 44 44 H 1.08997 * 109.47338 * 299.99673 * 24 21 20 45 45 H 1.08004 * 119.99778 * 179.97438 * 25 20 19 46 46 H 1.08000 * 120.00685 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0232 5 6 1.5117 2.1620 -1.2143 6 1 0.8259 2.9879 -1.0966 7 6 1.9041 1.7659 -2.4753 8 7 2.8237 0.8364 -2.6162 9 14 1.1294 2.5496 -3.9837 10 1 -0.0712 1.7726 -4.3837 11 1 0.7331 3.9454 -3.6679 12 1 2.1105 2.5537 -5.0984 13 7 1.5772 2.1241 1.2113 14 16 2.5566 2.1993 2.5446 15 8 1.8446 2.9428 3.5240 16 8 3.0346 0.8795 2.7663 17 6 3.9604 3.1699 2.1064 18 6 5.0831 2.5618 1.5769 19 6 6.1827 3.3237 1.2286 20 6 6.1634 4.6928 1.4198 21 6 7.3643 5.5228 1.0459 22 6 7.8918 6.2447 2.2875 23 6 8.4575 4.6129 0.4819 24 6 6.9630 6.5533 -0.0113 25 6 5.0425 5.3002 1.9542 26 6 3.9410 4.5388 2.2976 27 1 -0.3633 0.5911 0.8406 28 1 -0.3633 0.4323 -0.9323 29 1 -0.3633 -1.0236 0.0917 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.2725 0.4759 -1.8355 33 1 0.6971 2.5314 1.2324 34 1 5.1000 1.4916 1.4321 35 1 7.0584 2.8491 0.8114 36 1 8.1777 5.5104 3.0407 37 1 8.7607 6.8447 2.0172 38 1 7.1130 6.8929 2.6893 39 1 8.0817 4.0987 -0.4026 40 1 9.3263 5.2132 0.2119 41 1 8.7435 3.8786 1.2351 42 1 6.1841 7.2015 0.3904 43 1 7.8315 7.1539 -0.2814 44 1 6.5872 6.0390 -0.8958 45 1 5.0276 6.3697 2.1039 46 1 3.0654 5.0136 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186433038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:48 Heat of formation + Delta-G solvation = -76.937369 kcal Electronic energy + Delta-G solvation = -26695.282256 eV Core-core repulsion = 23096.867049 eV Total energy + Delta-G solvation = -3598.415207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.85697 -36.87167 -36.44620 -36.19684 -35.35874 -32.26909 -31.11339 -30.46624 -30.13796 -27.52879 -27.41912 -25.89111 -23.77187 -23.45628 -22.37795 -20.16973 -19.50977 -18.91321 -17.64993 -17.50822 -16.71244 -15.67999 -15.57511 -14.82206 -14.62913 -14.43829 -14.00923 -13.77786 -13.69579 -13.47668 -13.37086 -13.18323 -12.96457 -12.91114 -12.65886 -12.25705 -12.13456 -11.84750 -11.65221 -11.62980 -11.46625 -11.41373 -11.17551 -11.12972 -11.09561 -10.87205 -10.62731 -10.59219 -10.33513 -10.28302 -10.19083 -9.92446 -9.06783 -8.93277 -8.84701 -8.45739 -8.26784 -6.46223 -4.20163 0.85607 1.11987 1.48289 3.37407 3.39105 3.47922 3.54972 3.78009 4.26484 4.40436 4.43938 4.55063 4.77357 4.82016 5.03078 5.11156 5.13990 5.24931 5.39345 5.41520 5.44730 5.59115 5.63146 5.68972 5.72737 5.78914 5.87673 5.90854 6.04275 6.07200 6.09446 6.14573 6.20539 6.29207 6.34965 6.36490 6.45457 6.57270 6.83073 6.99708 7.00891 7.21287 7.30271 7.39628 7.68853 8.08413 8.34491 8.70791 9.48061 10.89647 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005031 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.348735 B = 5564.060480 C = 7149.987997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 C 0.268 3.732 4 H 0.032 0.968 5 C -0.597 4.597 6 H 0.058 0.942 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.285 1.285 13 N -1.093 6.093 14 S 2.688 3.312 15 O -0.982 6.982 16 O -0.965 6.965 17 C -0.669 4.669 18 C -0.010 4.010 19 C -0.142 4.142 20 C -0.022 4.022 21 C -0.036 4.036 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.016 4.016 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.272 0.728 33 H 0.411 0.589 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.126 0.874 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 8.910 6.749 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.050 0.950 5 C -0.637 4.637 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.541 5.541 9 Si 0.895 3.105 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.211 1.211 13 N -0.854 5.854 14 S 2.778 3.222 15 O -0.972 6.972 16 O -0.955 6.955 17 C -0.755 4.755 18 C -0.029 4.029 19 C -0.161 4.161 20 C -0.022 4.022 21 C -0.036 4.036 22 C -0.195 4.195 23 C -0.204 4.204 24 C -0.197 4.197 25 C -0.160 4.160 26 C -0.036 4.036 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.118 8.388 5.895 13.077 hybrid contribution 0.065 0.677 1.104 1.297 sum 8.183 9.065 6.999 14.076 Atomic orbital electron populations 1.21503 0.96727 0.98523 1.01673 1.22039 0.96332 0.98969 1.00626 1.18626 0.94022 0.88980 0.82057 0.95032 1.22024 1.31313 1.18953 0.91373 0.92386 1.25689 0.95751 0.95635 1.00719 1.70767 1.22901 1.26100 1.34373 0.83567 0.76008 0.75471 0.75429 1.21284 1.21519 1.21084 1.55365 1.28444 1.70750 1.30797 1.01861 0.73472 0.73896 0.73019 1.93517 1.71975 1.73553 1.58178 1.93557 1.81721 1.35718 1.84541 1.31029 1.19309 1.08319 1.16873 1.20954 0.91158 1.00302 0.90507 1.21270 0.99284 0.93519 1.02016 1.20077 0.94452 0.93813 0.93859 1.19615 0.92709 0.95077 0.96164 1.21891 1.00960 1.00091 0.96572 1.21991 0.97660 0.99399 1.01313 1.21899 1.01392 0.98013 0.98392 1.21000 0.93510 0.99847 1.01646 1.20819 0.98094 0.91690 0.92958 0.94327 0.91839 0.95338 0.90913 0.94077 0.91655 0.75492 0.84414 0.84900 0.92425 0.92173 0.92292 0.91785 0.92250 0.92150 0.92286 0.92208 0.91987 0.85584 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.47 37.16 0.35 -2.25 16 2 C -0.14 -3.16 5.59 -26.73 -0.15 -3.31 16 3 C 0.27 6.17 2.09 -69.08 -0.14 6.03 16 4 H 0.03 0.77 6.63 -51.93 -0.34 0.42 16 5 C -0.60 -15.01 7.46 -34.44 -0.26 -15.26 16 6 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 7 C 0.03 0.72 5.26 -17.82 -0.09 0.63 16 8 N -0.91 -25.05 12.89 55.43 0.71 -24.33 16 9 Si 1.07 23.66 29.91 -169.99 -5.08 18.58 16 10 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 N -1.09 -21.78 4.80 -5.88 -0.03 -21.81 16 14 S 2.69 51.19 5.65 -107.50 -0.61 50.58 16 15 O -0.98 -19.53 17.28 -57.17 -0.99 -20.51 16 16 O -0.97 -20.44 16.54 -57.17 -0.95 -21.39 16 17 C -0.67 -11.83 5.82 -39.59 -0.23 -12.06 16 18 C -0.01 -0.17 8.92 -39.58 -0.35 -0.52 16 19 C -0.14 -2.11 8.98 -39.58 -0.36 -2.46 16 20 C -0.02 -0.29 4.76 -104.62 -0.50 -0.79 16 21 C -0.04 -0.37 0.85 -155.67 -0.13 -0.51 16 22 C -0.14 -1.22 8.29 37.16 0.31 -0.92 16 23 C -0.15 -1.41 7.13 37.16 0.26 -1.14 16 24 C -0.14 -1.40 8.29 37.15 0.31 -1.09 16 25 C -0.14 -1.95 8.71 -39.58 -0.34 -2.29 16 26 C -0.02 -0.26 9.52 -39.59 -0.38 -0.64 16 27 H 0.04 0.73 7.25 -51.93 -0.38 0.35 16 28 H 0.06 1.37 7.37 -51.93 -0.38 0.99 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.77 6.27 -51.93 -0.33 1.45 16 31 H 0.04 0.90 7.64 -51.93 -0.40 0.51 16 32 H 0.27 7.46 6.03 -40.82 -0.25 7.22 16 33 H 0.41 7.54 8.48 -34.47 -0.29 7.25 16 34 H 0.14 2.33 7.61 -52.48 -0.40 1.93 16 35 H 0.13 1.68 5.90 -52.49 -0.31 1.37 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 39 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 42 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.13 1.39 7.10 -52.48 -0.37 1.02 16 46 H 0.14 1.94 7.62 -52.49 -0.40 1.54 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -30.76 373.92 -10.14 -40.90 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.14 Total: 8.94 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: -1.70 Total: -36.59 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.69 Total: -46.15 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.93 Total: -41.90 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.08 Total: 18.58 kcal Atomic # 16 Polarization: 51.19 SS G_CDS: -0.61 Total: 50.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.76 -10.14 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186433038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.038 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds