Wall clock time and date at job start Tue Mar 31 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46971 * 2 1 4 4 H 1.09002 * 109.46876 * 181.29233 * 3 2 1 5 5 C 1.50704 * 109.46904 * 301.28556 * 3 2 1 6 6 H 1.08001 * 119.99767 * 114.81900 * 5 3 2 7 7 C 1.37882 * 120.00194 * 294.81188 * 5 3 2 8 8 N 1.31508 * 119.99887 * 354.27943 * 7 5 3 9 9 Si 1.86800 * 119.99932 * 174.27559 * 7 5 3 10 10 H 1.48496 * 109.47227 * 270.00525 * 9 7 5 11 11 H 1.48500 * 109.46828 * 30.00222 * 9 7 5 12 12 H 1.48493 * 109.46932 * 150.00149 * 9 7 5 13 13 N 1.46497 * 109.47386 * 61.28811 * 3 2 1 14 14 S 1.65605 * 120.00044 * 95.14802 * 13 3 2 15 15 O 1.42093 * 106.39957 * 178.58590 * 14 13 3 16 16 O 1.42105 * 106.39847 * 311.50371 * 14 13 3 17 17 C 1.76199 * 107.21718 * 65.04579 * 14 13 3 18 18 C 1.38234 * 119.99798 * 269.72618 * 17 14 13 19 19 C 1.38236 * 120.00216 * 179.76846 * 18 17 14 20 20 C 1.38245 * 119.99515 * 0.50649 * 19 18 17 21 21 C 1.50696 * 119.99956 * 179.72517 * 20 19 18 22 22 C 1.53003 * 109.46908 * 240.02228 * 21 20 19 23 23 C 1.52998 * 109.47075 * 0.02562 * 21 20 19 24 24 C 1.52993 * 109.47129 * 120.02045 * 21 20 19 25 25 C 1.38236 * 119.99671 * 359.74753 * 20 19 18 26 26 C 1.38228 * 119.99934 * 90.00192 * 17 14 13 27 27 H 1.08996 * 109.46951 * 305.11655 * 1 2 3 28 28 H 1.09003 * 109.46987 * 65.12212 * 1 2 3 29 29 H 1.08998 * 109.46776 * 185.11669 * 1 2 3 30 30 H 1.09001 * 109.46962 * 239.99592 * 2 1 3 31 31 H 1.09004 * 109.46900 * 119.99617 * 2 1 3 32 32 H 0.97003 * 120.00267 * 355.51020 * 8 7 5 33 33 H 0.96996 * 119.99794 * 275.14564 * 13 3 2 34 34 H 1.08005 * 120.00117 * 359.97438 * 18 17 14 35 35 H 1.07998 * 120.00514 * 180.23360 * 19 18 17 36 36 H 1.09003 * 109.46999 * 60.00132 * 22 21 20 37 37 H 1.09002 * 109.46808 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47324 * 299.99989 * 22 21 20 39 39 H 1.08997 * 109.47351 * 60.00352 * 23 21 20 40 40 H 1.09002 * 109.47362 * 180.02562 * 23 21 20 41 41 H 1.09003 * 109.47418 * 300.00227 * 23 21 20 42 42 H 1.09002 * 109.47349 * 60.00078 * 24 21 20 43 43 H 1.09003 * 109.47450 * 179.97438 * 24 21 20 44 44 H 1.08997 * 109.47338 * 299.99673 * 24 21 20 45 45 H 1.08004 * 119.99778 * 179.97438 * 25 20 19 46 46 H 1.08000 * 120.00685 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0232 5 6 1.5117 2.1620 -1.2143 6 1 0.8259 2.9879 -1.0966 7 6 1.9041 1.7659 -2.4753 8 7 2.8237 0.8364 -2.6162 9 14 1.1294 2.5496 -3.9837 10 1 -0.0712 1.7726 -4.3837 11 1 0.7331 3.9454 -3.6679 12 1 2.1105 2.5537 -5.0984 13 7 1.5772 2.1241 1.2113 14 16 2.5566 2.1993 2.5446 15 8 1.8446 2.9428 3.5240 16 8 3.0346 0.8795 2.7663 17 6 3.9604 3.1699 2.1064 18 6 5.0831 2.5618 1.5769 19 6 6.1827 3.3237 1.2286 20 6 6.1634 4.6928 1.4198 21 6 7.3643 5.5228 1.0459 22 6 7.8918 6.2447 2.2875 23 6 8.4575 4.6129 0.4819 24 6 6.9630 6.5533 -0.0113 25 6 5.0425 5.3002 1.9542 26 6 3.9410 4.5388 2.2976 27 1 -0.3633 0.5911 0.8406 28 1 -0.3633 0.4323 -0.9323 29 1 -0.3633 -1.0236 0.0917 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.2725 0.4759 -1.8355 33 1 0.6971 2.5314 1.2324 34 1 5.1000 1.4916 1.4321 35 1 7.0584 2.8491 0.8114 36 1 8.1777 5.5104 3.0407 37 1 8.7607 6.8447 2.0172 38 1 7.1130 6.8929 2.6893 39 1 8.0817 4.0987 -0.4026 40 1 9.3263 5.2132 0.2119 41 1 8.7435 3.8786 1.2351 42 1 6.1841 7.2015 0.3904 43 1 7.8315 7.1539 -0.2814 44 1 6.5872 6.0390 -0.8958 45 1 5.0276 6.3697 2.1039 46 1 3.0654 5.0136 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186433038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:47 Heat of formation + Delta-G solvation = -95.170221 kcal Electronic energy + Delta-G solvation = -26696.072892 eV Core-core repulsion = 23096.867049 eV Total energy + Delta-G solvation = -3599.205843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93533 -38.53438 -37.98304 -37.39817 -36.96959 -34.17031 -32.28286 -32.19821 -31.29136 -28.32360 -28.13582 -27.78050 -25.64977 -24.60630 -23.55153 -21.98193 -20.68515 -20.18599 -19.41046 -18.98615 -18.37063 -17.01835 -16.71447 -16.22994 -15.85655 -15.68228 -15.45067 -15.24695 -15.17355 -14.88661 -14.72695 -14.54470 -14.42362 -14.17407 -13.94505 -13.29685 -13.26445 -13.18967 -13.08699 -12.88612 -12.86913 -12.63136 -12.58701 -12.56581 -12.33242 -12.15802 -12.08724 -11.93294 -11.93064 -11.72605 -11.58938 -11.51168 -10.83607 -10.44811 -10.17561 -10.05887 -10.04239 -8.52822 -6.26524 -0.58973 -0.20277 0.27703 1.58500 1.64510 1.81008 2.04534 2.43026 2.61155 2.78241 3.24483 3.31246 3.48673 3.65144 3.87610 4.02166 4.04472 4.25415 4.26310 4.29143 4.38616 4.45726 4.60493 4.68853 4.71190 4.73404 4.76245 4.86474 4.88548 4.92096 4.99395 4.99826 5.04285 5.07804 5.16314 5.25084 5.25899 5.33869 5.36866 5.40447 5.52226 5.53614 5.58812 5.83356 5.91319 6.22748 6.40226 6.64251 7.48644 8.83386 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005031 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.348735 B = 5564.060480 C = 7149.987997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 C 0.272 3.728 4 H 0.016 0.984 5 C -0.596 4.596 6 H 0.059 0.941 7 C -0.017 4.017 8 N -0.931 5.931 9 Si 1.107 2.893 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.290 1.290 13 N -1.093 6.093 14 S 2.703 3.297 15 O -0.990 6.990 16 O -0.992 6.992 17 C -0.686 4.686 18 C -0.034 4.034 19 C -0.150 4.150 20 C -0.017 4.017 21 C -0.035 4.035 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.029 4.029 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.418 0.582 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.159 0.841 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 11.308 6.822 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.166 3.834 4 H 0.033 0.967 5 C -0.636 4.636 6 H 0.077 0.923 7 C -0.217 4.217 8 N -0.569 5.569 9 Si 0.931 3.069 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.216 1.216 13 N -0.853 5.853 14 S 2.796 3.204 15 O -0.980 6.980 16 O -0.982 6.982 17 C -0.775 4.775 18 C -0.054 4.054 19 C -0.169 4.169 20 C -0.017 4.017 21 C -0.035 4.035 22 C -0.193 4.193 23 C -0.205 4.205 24 C -0.197 4.197 25 C -0.157 4.157 26 C -0.049 4.049 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.177 0.823 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.564 10.772 5.997 15.011 hybrid contribution 0.008 -0.010 1.136 1.136 sum 8.572 10.762 7.133 15.498 Atomic orbital electron populations 1.21460 0.94911 1.00067 1.01580 1.21990 0.97971 0.98450 0.99495 1.18394 0.93096 0.89329 0.82582 0.96674 1.22252 1.30583 1.18656 0.92059 0.92296 1.26857 0.95647 0.95558 1.03616 1.70862 1.24374 1.27696 1.33922 0.83035 0.75527 0.75724 0.72630 1.20168 1.19792 1.21585 1.55205 1.29287 1.70872 1.29929 1.01177 0.73429 0.73371 0.72455 1.93495 1.72633 1.73546 1.58331 1.93514 1.82094 1.37719 1.84923 1.30691 1.18598 1.09122 1.19113 1.21038 0.92237 1.00242 0.91862 1.21550 0.99122 0.94418 1.01762 1.20545 0.95573 0.93545 0.92035 1.19721 0.91523 0.95014 0.97250 1.21890 1.01874 1.00090 0.95429 1.22012 0.98092 0.99613 1.00815 1.21914 1.02503 0.97893 0.97361 1.21394 0.92620 1.01359 1.00328 1.21116 0.99491 0.91053 0.93193 0.92893 0.93067 0.93334 0.93111 0.94086 0.92791 0.74697 0.85558 0.83256 0.92808 0.90201 0.91722 0.93024 0.90265 0.91980 0.91732 0.90065 0.93849 0.82315 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.47 71.98 0.68 -4.30 16 2 C -0.14 -6.42 5.59 30.59 0.17 -6.25 16 3 C 0.27 12.78 2.09 44.25 0.09 12.87 16 4 H 0.02 0.78 6.63 -2.39 -0.02 0.77 16 5 C -0.60 -30.07 7.46 25.60 0.19 -29.88 16 6 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 7 C -0.02 -0.87 5.26 84.66 0.45 -0.43 16 8 N -0.93 -52.60 12.89 21.45 0.28 -52.33 16 9 Si 1.11 47.21 29.91 68.60 2.05 49.26 16 10 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 13 N -1.09 -43.94 4.80 -172.52 -0.83 -44.77 16 14 S 2.70 104.62 5.65 -56.49 -0.32 104.31 16 15 O -0.99 -39.19 17.28 -128.00 -2.21 -41.40 16 16 O -0.99 -43.36 16.54 -128.00 -2.12 -45.48 16 17 C -0.69 -24.54 5.82 22.27 0.13 -24.41 16 18 C -0.03 -1.21 8.92 22.27 0.20 -1.01 16 19 C -0.15 -4.42 8.98 22.27 0.20 -4.22 16 20 C -0.02 -0.42 4.76 -19.86 -0.09 -0.52 16 21 C -0.04 -0.64 0.85 -52.93 -0.05 -0.69 16 22 C -0.14 -1.94 8.29 71.98 0.60 -1.35 16 23 C -0.15 -2.52 7.13 71.98 0.51 -2.01 16 24 C -0.14 -2.40 8.29 71.98 0.60 -1.80 16 25 C -0.14 -3.53 8.71 22.27 0.19 -3.34 16 26 C -0.03 -0.90 9.52 22.27 0.21 -0.69 16 27 H 0.05 1.96 7.25 -2.39 -0.02 1.94 16 28 H 0.05 2.18 7.37 -2.39 -0.02 2.16 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.55 6.27 -2.39 -0.01 2.54 16 31 H 0.04 1.85 7.64 -2.38 -0.02 1.83 16 32 H 0.26 14.93 6.03 -92.71 -0.56 14.37 16 33 H 0.42 15.24 8.48 -96.75 -0.82 14.42 16 34 H 0.13 4.59 7.61 -2.91 -0.02 4.57 16 35 H 0.15 3.75 5.90 -2.91 -0.02 3.73 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 39 H 0.05 1.00 7.51 -2.39 -0.02 0.99 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.03 7.51 -2.39 -0.02 1.01 16 42 H 0.06 1.03 7.39 -2.39 -0.02 1.01 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.16 2.95 7.10 -2.91 -0.02 2.93 16 46 H 0.15 4.05 7.62 -2.91 -0.02 4.03 16 Total: -1.00 -65.83 373.92 1.30 -64.53 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.36 Total: 33.88 kcal Atomic # 6 Polarization: -72.09 SS G_CDS: 4.08 Total: -68.01 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -0.55 Total: -97.09 kcal Atomic # 8 Polarization: -82.55 SS G_CDS: -4.33 Total: -86.88 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.26 kcal Atomic # 16 Polarization: 104.62 SS G_CDS: -0.32 Total: 104.31 kcal Total: -65.83 1.30 -64.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186433038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.641 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds