Wall clock time and date at job start Tue Mar 31 2020 14:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47222 * 2 1 4 4 H 1.09002 * 109.46922 * 56.49066 * 3 2 1 5 5 C 1.50696 * 109.47395 * 176.48960 * 3 2 1 6 6 H 1.08002 * 120.00144 * 119.99743 * 5 3 2 7 7 C 1.37876 * 120.00202 * 300.00372 * 5 3 2 8 8 N 1.31520 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00120 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47079 * 60.00217 * 9 7 5 11 11 H 1.48497 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47114 * 299.99896 * 9 7 5 13 13 N 1.46496 * 109.47456 * 296.49408 * 3 2 1 14 14 S 1.65597 * 120.00423 * 144.35087 * 13 3 2 15 15 O 1.42096 * 106.40465 * 310.90259 * 14 13 3 16 16 O 1.42102 * 106.40432 * 177.98007 * 14 13 3 17 17 C 1.76200 * 107.21582 * 64.44382 * 14 13 3 18 18 C 1.38240 * 119.99819 * 258.38444 * 17 14 13 19 19 C 1.50700 * 120.00280 * 0.02562 * 18 17 14 20 20 C 1.38239 * 119.99802 * 180.27542 * 18 17 14 21 21 C 1.50695 * 120.00286 * 179.74197 * 20 18 17 22 22 C 1.38240 * 119.99908 * 359.47835 * 20 18 17 23 23 C 1.38231 * 120.00062 * 0.24258 * 22 20 18 24 24 C 1.50701 * 120.00156 * 180.02562 * 23 22 20 25 25 C 1.38236 * 120.00137 * 0.02562 * 23 22 20 26 26 C 1.50698 * 120.00206 * 179.97438 * 25 23 22 27 27 H 1.08996 * 109.47608 * 65.05350 * 1 2 3 28 28 H 1.09006 * 109.47094 * 185.05884 * 1 2 3 29 29 H 1.09001 * 109.47081 * 305.05037 * 1 2 3 30 30 H 1.09009 * 109.46353 * 240.00241 * 2 1 3 31 31 H 1.09000 * 109.47313 * 120.00741 * 2 1 3 32 32 H 0.96994 * 119.99395 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99991 * 324.35682 * 13 3 2 34 34 H 1.09006 * 109.46926 * 277.39613 * 19 18 17 35 35 H 1.08998 * 109.46945 * 37.39512 * 19 18 17 36 36 H 1.08996 * 109.46797 * 157.39381 * 19 18 17 37 37 H 1.09000 * 109.47628 * 269.73623 * 21 20 18 38 38 H 1.09001 * 109.47168 * 149.72564 * 21 20 18 39 39 H 1.09001 * 109.46696 * 29.72785 * 21 20 18 40 40 H 1.08001 * 119.99886 * 180.27819 * 22 20 18 41 41 H 1.08994 * 109.47169 * 90.00591 * 24 23 22 42 42 H 1.08995 * 109.47086 * 210.00585 * 24 23 22 43 43 H 1.09002 * 109.46778 * 330.00043 * 24 23 22 44 44 H 1.09000 * 109.47570 * 97.36844 * 26 25 23 45 45 H 1.09003 * 109.46909 * 217.36568 * 26 25 23 46 46 H 1.09001 * 109.46997 * 337.36219 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6262 1.9741 0.8569 5 6 3.5445 1.4434 0.0870 6 1 4.1306 1.8947 -0.6999 7 6 4.1727 0.8679 1.1711 8 7 3.4590 0.3178 2.1290 9 14 6.0376 0.8685 1.2785 10 1 6.5331 2.2684 1.2783 11 1 6.4614 0.1931 2.5313 12 1 6.6009 0.1438 0.1112 13 7 1.6219 2.1083 -1.2361 14 16 1.2100 3.7120 -1.2143 15 8 0.2968 3.8772 -0.1382 16 8 0.9026 4.0657 -2.5558 17 6 2.6586 4.6167 -0.7808 18 6 2.8184 5.0892 0.5085 19 6 1.7541 4.8300 1.5434 20 6 3.9523 5.8038 0.8471 21 6 4.1239 6.3239 2.2510 22 6 4.9312 6.0367 -0.1008 23 6 4.7740 5.5593 -1.3885 24 6 5.8415 5.8126 -2.4216 25 6 3.6377 4.8494 -1.7286 26 6 3.4660 4.3294 -3.1325 27 1 -0.3634 0.4334 -0.9317 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3633 0.5902 0.8413 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9010 -0.0867 2.8918 33 1 1.5863 1.6097 -2.0674 34 1 0.9609 5.5709 1.4422 35 1 1.3402 3.8324 1.3970 36 1 2.1913 4.8995 2.5394 37 1 3.6983 7.3248 2.3223 38 1 5.1851 6.3618 2.4972 39 1 3.6124 5.6611 2.9490 40 1 5.8191 6.5912 0.1650 41 1 6.5656 4.9982 -2.4032 42 1 5.3846 5.8702 -3.4095 43 1 6.3463 6.7528 -2.1994 44 1 3.7713 3.2838 -3.1727 45 1 2.4196 4.4139 -3.4258 46 1 4.0829 4.9145 -3.8146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186438820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:58 Heat of formation + Delta-G solvation = -58.762681 kcal Electronic energy + Delta-G solvation = -28067.562473 eV Core-core repulsion = 24469.935380 eV Total energy + Delta-G solvation = -3597.627093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.56130 -37.02451 -35.93092 -35.32445 -34.45428 -32.55886 -32.20101 -30.57562 -29.22053 -28.79381 -26.62899 -25.47548 -23.91634 -23.02397 -22.50110 -20.17210 -19.22861 -18.76250 -17.12134 -16.61574 -16.23239 -16.17517 -15.18399 -14.94117 -14.48211 -14.29283 -13.77889 -13.51127 -13.22265 -13.11232 -12.98770 -12.91259 -12.87737 -12.41807 -12.31107 -12.25474 -11.93060 -11.87381 -11.76601 -11.63883 -11.43325 -11.28263 -11.17669 -11.00419 -10.93715 -10.79900 -10.54124 -10.30953 -10.11783 -9.83896 -9.79016 -9.70120 -9.65987 -8.64903 -8.46264 -8.20011 -7.87194 -6.11314 -4.19012 1.10632 1.38588 1.71807 3.24510 3.29270 3.32678 3.67192 3.91371 4.35998 4.40957 4.86359 5.01350 5.14284 5.18531 5.22340 5.31767 5.44972 5.51767 5.66776 5.72924 5.78393 5.85599 5.89668 6.02672 6.04381 6.16326 6.18215 6.23848 6.28434 6.31014 6.39606 6.43015 6.56645 6.58952 6.63576 6.80202 6.84943 6.88155 6.96713 7.08687 7.19042 7.35842 7.59831 7.64334 7.88963 8.06468 8.22459 8.84179 9.47917 10.92608 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.007874 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.660915 B = 3555.366399 C = 4633.261242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.276 3.724 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -1.101 6.101 14 S 2.693 3.307 15 O -0.964 6.964 16 O -0.985 6.985 17 C -0.652 4.652 18 C 0.039 3.961 19 C -0.147 4.147 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.063 4.063 23 C -0.125 4.125 24 C -0.111 4.111 25 C 0.027 3.973 26 C -0.186 4.186 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 8.328 -4.292 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.172 3.828 4 H 0.069 0.931 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.132 4.132 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.861 5.861 14 S 2.785 3.215 15 O -0.954 6.954 16 O -0.975 6.975 17 C -0.740 4.740 18 C 0.037 3.963 19 C -0.203 4.203 20 C -0.120 4.120 21 C -0.169 4.169 22 C -0.081 4.081 23 C -0.126 4.126 24 C -0.168 4.168 25 C 0.026 3.974 26 C -0.242 4.242 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.142 0.858 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.214 8.680 -4.093 9.599 hybrid contribution 2.210 -0.216 0.043 2.221 sum 2.423 8.464 -4.049 9.690 Atomic orbital electron populations 1.21842 0.98846 0.99473 1.00509 1.21815 0.92112 0.99083 1.03166 1.18665 0.93963 0.90471 0.79702 0.93089 1.21491 0.91278 1.37709 1.06206 0.92099 1.24824 0.97949 0.94964 0.95490 1.69834 1.35093 1.37802 1.09731 0.86723 0.86070 0.78374 0.77353 1.20163 1.21254 1.20297 1.55458 1.85569 1.26287 1.18773 1.01517 0.74164 0.73104 0.72693 1.93559 1.61064 1.85921 1.54834 1.93352 1.84001 1.83667 1.36488 1.30341 1.22431 1.19816 1.01369 1.19383 0.94420 0.90383 0.92078 1.21574 0.95983 1.06135 0.96577 1.19724 0.94987 1.01037 0.96273 1.20817 1.02128 1.00845 0.93154 1.20984 0.97493 0.97196 0.92405 1.19674 0.96275 1.01413 0.95242 1.20795 0.96846 1.01542 0.97580 1.19213 0.91354 0.92332 0.94498 1.21923 1.07852 1.01903 0.92526 0.94413 0.94613 0.93251 0.94181 0.87693 0.92632 0.76228 0.90274 0.87181 0.91398 0.91629 0.92006 0.90625 0.86291 0.91387 0.91160 0.92092 0.90014 0.85778 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.72 37.16 0.36 -2.47 16 2 C -0.12 -2.64 5.37 -26.73 -0.14 -2.79 16 3 C 0.28 6.24 2.30 -69.09 -0.16 6.09 16 4 H 0.05 1.27 5.99 -51.93 -0.31 0.95 16 5 C -0.53 -13.07 8.84 -34.44 -0.30 -13.38 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.89 -23.30 11.30 55.43 0.63 -22.67 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -1.10 -21.48 4.93 -5.89 -0.03 -21.51 16 14 S 2.69 52.53 5.15 -107.50 -0.55 51.97 16 15 O -0.96 -20.24 13.11 -57.17 -0.75 -20.99 16 16 O -0.98 -19.33 14.53 -57.17 -0.83 -20.16 16 17 C -0.65 -12.68 5.92 -39.58 -0.23 -12.92 16 18 C 0.04 0.74 5.88 -104.62 -0.62 0.13 16 19 C -0.15 -2.71 8.04 36.01 0.29 -2.42 16 20 C -0.12 -2.06 5.88 -104.62 -0.62 -2.67 16 21 C -0.11 -1.57 9.60 36.00 0.35 -1.23 16 22 C -0.06 -1.01 9.36 -39.58 -0.37 -1.38 16 23 C -0.13 -2.06 5.88 -104.62 -0.62 -2.68 16 24 C -0.11 -1.41 9.59 36.01 0.35 -1.07 16 25 C 0.03 0.49 5.87 -104.62 -0.61 -0.12 16 26 C -0.19 -2.94 9.06 36.00 0.33 -2.62 16 27 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.10 2.55 5.98 -51.93 -0.31 2.24 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.40 6.96 8.84 -34.46 -0.30 6.66 16 34 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 35 H 0.11 2.29 4.07 -51.93 -0.21 2.08 16 36 H 0.07 1.12 5.69 -51.93 -0.30 0.83 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.08 1.07 5.87 -51.93 -0.30 0.76 16 40 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.80 5.88 -51.93 -0.31 0.50 16 43 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.12 2.08 4.60 -52.10 -0.24 1.84 16 46 H 0.07 0.97 5.69 -51.93 -0.30 0.67 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -28.83 364.08 -9.91 -38.74 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.74 Total: 11.47 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: -2.10 Total: -37.81 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.60 Total: -44.18 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.58 Total: -41.14 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.55 Total: 51.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.83 -9.91 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186438820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.019 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds