Wall clock time and date at job start Tue Mar 31 2020 14:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47530 * 2 1 4 4 H 1.09003 * 109.47058 * 305.35678 * 3 2 1 5 5 C 1.50704 * 109.47332 * 185.35805 * 3 2 1 6 6 H 1.07999 * 119.99668 * 244.88842 * 5 3 2 7 7 C 1.37875 * 119.99859 * 64.89231 * 5 3 2 8 8 N 1.31518 * 119.99982 * 192.30687 * 7 5 3 9 9 Si 1.86800 * 120.00074 * 12.30602 * 7 5 3 10 10 H 1.48497 * 109.47246 * 95.28562 * 9 7 5 11 11 H 1.48500 * 109.47023 * 215.28314 * 9 7 5 12 12 H 1.48503 * 109.47194 * 335.28225 * 9 7 5 13 13 N 1.46504 * 109.47217 * 65.35619 * 3 2 1 14 14 S 1.65590 * 120.00171 * 215.25471 * 13 3 2 15 15 O 1.42098 * 106.40412 * 311.69303 * 14 13 3 16 16 O 1.42098 * 106.40203 * 178.76763 * 14 13 3 17 17 C 1.76209 * 107.21729 * 65.23116 * 14 13 3 18 18 C 1.38231 * 120.00048 * 259.57958 * 17 14 13 19 19 C 1.50704 * 120.00157 * 359.97438 * 18 17 14 20 20 C 1.38238 * 119.99975 * 180.23543 * 18 17 14 21 21 C 1.50696 * 120.00069 * 179.76933 * 20 18 17 22 22 C 1.38235 * 119.99701 * 359.48973 * 20 18 17 23 23 C 1.38233 * 120.00192 * 0.26021 * 22 20 18 24 24 C 1.50701 * 119.99839 * 180.02562 * 23 22 20 25 25 C 1.38233 * 120.00058 * 359.97438 * 23 22 20 26 26 C 1.50700 * 120.00245 * 180.02562 * 25 23 22 27 27 H 1.09002 * 109.47289 * 184.89631 * 1 2 3 28 28 H 1.09002 * 109.46570 * 304.89499 * 1 2 3 29 29 H 1.09003 * 109.47302 * 64.88959 * 1 2 3 30 30 H 1.09001 * 109.46664 * 240.00087 * 2 1 3 31 31 H 1.09002 * 109.46992 * 120.00654 * 2 1 3 32 32 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 33 33 H 0.97002 * 119.99567 * 35.25723 * 13 3 2 34 34 H 1.08998 * 109.46975 * 277.27025 * 19 18 17 35 35 H 1.09008 * 109.46938 * 37.27062 * 19 18 17 36 36 H 1.08998 * 109.47338 * 157.27014 * 19 18 17 37 37 H 1.09003 * 109.46737 * 269.72654 * 21 20 18 38 38 H 1.08994 * 109.47653 * 149.72431 * 21 20 18 39 39 H 1.08995 * 109.47421 * 29.72277 * 21 20 18 40 40 H 1.08001 * 119.99547 * 180.27538 * 22 20 18 41 41 H 1.09003 * 109.46823 * 90.00301 * 24 23 22 42 42 H 1.09000 * 109.46758 * 209.99733 * 24 23 22 43 43 H 1.08989 * 109.47561 * 329.99767 * 24 23 22 44 44 H 1.08993 * 109.47300 * 97.81481 * 26 25 23 45 45 H 1.09007 * 109.47010 * 217.81839 * 26 25 23 46 46 H 1.09001 * 109.47287 * 337.81440 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6006 1.9832 -0.8381 5 6 3.5413 1.4444 -0.1327 6 1 4.1542 1.8155 0.6754 7 6 4.1320 0.9726 -1.2856 8 7 5.4272 0.7462 -1.3157 9 14 3.0928 0.6549 -2.8050 10 1 3.1418 1.8423 -3.6954 11 1 3.6229 -0.5286 -3.5287 12 1 1.6877 0.3982 -2.3989 13 7 1.6599 2.0948 1.2554 14 16 1.2573 3.7010 1.2650 15 8 2.2781 4.3749 0.5418 16 8 0.9146 4.0208 2.6065 17 6 -0.2195 3.8742 0.3195 18 6 -0.1554 4.3222 -0.9866 19 6 1.1774 4.6631 -1.6018 20 6 -1.3145 4.4627 -1.7268 21 6 -1.2451 4.9560 -3.1490 22 6 -2.5366 4.1451 -1.1641 23 6 -2.6002 3.6922 0.1403 24 6 -3.9324 3.3454 0.7534 25 6 -1.4416 3.5563 0.8821 26 6 -1.5108 3.0620 2.3040 27 1 -0.3634 -1.0239 0.0877 28 1 -0.3632 0.5879 0.8429 29 1 -0.3634 0.4361 -0.9306 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8428 0.4139 -2.1267 33 1 1.6441 1.5859 2.0811 34 1 1.4623 5.6750 -1.3138 35 1 1.9311 3.9590 -1.2490 36 1 1.1028 4.6017 -2.6875 37 1 -1.3275 6.0429 -3.1609 38 1 -2.0637 4.5233 -3.7241 39 1 -0.2940 4.6589 -3.5907 40 1 -3.4417 4.2506 -1.7439 41 1 -4.1541 2.2940 0.5701 42 1 -3.8963 3.5272 1.8276 43 1 -4.7103 3.9641 0.3062 44 1 -1.2907 1.9948 2.3288 45 1 -0.7809 3.5978 2.9109 46 1 -2.5110 3.2360 2.7009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186438834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:03 Heat of formation + Delta-G solvation = -49.119442 kcal Electronic energy + Delta-G solvation = -28038.818351 eV Core-core repulsion = 24441.609420 eV Total energy + Delta-G solvation = -3597.208931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.88023 -37.10363 -36.25145 -35.34612 -34.69867 -32.83079 -32.19567 -31.02981 -29.47687 -29.04592 -27.19020 -25.71675 -24.17215 -22.78016 -22.75635 -20.51881 -19.48280 -18.89342 -17.38154 -16.80352 -16.54128 -16.22552 -15.37605 -15.19378 -14.69857 -14.52516 -13.90745 -13.76611 -13.51778 -13.37805 -13.18155 -13.07658 -12.82684 -12.67918 -12.57813 -12.42392 -12.26124 -12.15449 -12.08977 -11.95504 -11.62244 -11.51553 -11.35283 -11.21021 -10.93926 -10.86179 -10.79632 -10.62527 -10.22296 -10.10551 -9.90226 -9.79752 -9.41873 -8.95846 -8.60949 -8.29999 -8.18816 -6.13743 -4.10409 0.86891 1.12381 1.38488 3.21418 3.29291 3.33780 3.41805 3.77589 4.27252 4.34668 4.62028 4.73648 4.87669 5.04045 5.05672 5.13463 5.19545 5.27825 5.43085 5.47806 5.54602 5.60637 5.65627 5.69709 5.78910 5.81544 5.84977 5.95176 5.95974 6.06436 6.10435 6.17216 6.19735 6.31580 6.37605 6.47151 6.52540 6.58794 6.59735 6.69097 6.84752 6.99185 7.06353 7.22586 7.56152 7.82145 8.46258 8.97687 9.48354 10.99559 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.006262 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.354930 B = 4470.085497 C = 4924.075492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.257 3.743 4 H 0.034 0.966 5 C -0.526 4.526 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.846 3.154 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.248 1.248 13 N -1.094 6.094 14 S 2.689 3.311 15 O -0.938 6.938 16 O -0.979 6.979 17 C -0.673 4.673 18 C 0.027 3.973 19 C -0.159 4.159 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.062 4.062 23 C -0.124 4.124 24 C -0.112 4.112 25 C 0.025 3.975 26 C -0.189 4.189 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.264 0.736 33 H 0.409 0.591 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.560 4.207 0.753 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.151 3.849 4 H 0.052 0.948 5 C -0.565 4.565 6 H 0.101 0.899 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.672 3.328 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.172 1.172 13 N -0.854 5.854 14 S 2.779 3.221 15 O -0.928 6.928 16 O -0.969 6.969 17 C -0.759 4.759 18 C 0.026 3.974 19 C -0.215 4.215 20 C -0.122 4.122 21 C -0.172 4.172 22 C -0.080 4.080 23 C -0.124 4.124 24 C -0.169 4.169 25 C 0.023 3.977 26 C -0.245 4.245 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.242 0.758 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.148 0.852 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.941 4.918 0.861 17.662 hybrid contribution -1.189 -0.742 -1.220 1.858 sum -18.130 4.176 -0.358 18.608 Atomic orbital electron populations 1.21883 0.98022 1.00177 1.01026 1.22233 0.93196 0.99255 1.02343 1.18846 0.96091 0.89708 0.80220 0.94833 1.21288 0.89049 1.42531 1.03635 0.89883 1.24837 0.94698 0.94478 0.98264 1.69929 1.10238 1.44190 1.28074 0.87481 0.82353 0.78498 0.84428 1.20148 1.20990 1.17228 1.55257 1.83299 1.29527 1.17305 1.01905 0.73775 0.73457 0.73009 1.93629 1.54341 1.72506 1.72320 1.93352 1.84184 1.83708 1.35636 1.30745 1.18861 1.17201 1.09059 1.19577 0.96129 0.90726 0.90965 1.21727 0.93596 1.05498 1.00641 1.19815 0.92708 1.02704 0.96935 1.20852 1.03185 1.01087 0.92105 1.21055 0.97054 0.95679 0.94247 1.19753 0.95202 1.02946 0.94546 1.20815 0.93252 1.01679 1.01145 1.19323 0.91058 0.91942 0.95358 1.21994 1.06360 1.03045 0.93124 0.93892 0.93149 0.93722 0.91425 0.91804 0.92545 0.75760 0.89313 0.86491 0.91363 0.91215 0.91799 0.90623 0.85935 0.91290 0.90969 0.91877 0.90179 0.85235 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.86 37.16 0.37 -2.14 16 2 C -0.13 -2.55 4.75 -26.73 -0.13 -2.68 16 3 C 0.26 5.57 1.64 -69.08 -0.11 5.45 16 4 H 0.03 0.75 5.23 -51.93 -0.27 0.47 16 5 C -0.53 -14.01 9.29 -34.44 -0.32 -14.33 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.08 2.22 5.37 -17.82 -0.10 2.12 16 8 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 9 Si 0.85 19.90 25.72 -169.99 -4.37 15.53 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.25 -5.33 5.33 56.52 0.30 -5.03 16 13 N -1.09 -20.65 4.84 -5.88 -0.03 -20.68 16 14 S 2.69 50.98 5.08 -107.50 -0.55 50.44 16 15 O -0.94 -20.61 13.42 -57.17 -0.77 -21.38 16 16 O -0.98 -18.60 14.46 -57.17 -0.83 -19.43 16 17 C -0.67 -11.54 5.81 -39.58 -0.23 -11.77 16 18 C 0.03 0.46 5.88 -104.62 -0.62 -0.15 16 19 C -0.16 -2.78 8.01 36.01 0.29 -2.49 16 20 C -0.12 -1.73 5.88 -104.62 -0.62 -2.35 16 21 C -0.12 -1.32 9.60 36.00 0.35 -0.98 16 22 C -0.06 -0.80 9.36 -39.58 -0.37 -1.17 16 23 C -0.12 -1.63 5.88 -104.62 -0.62 -2.25 16 24 C -0.11 -1.09 9.59 36.01 0.35 -0.75 16 25 C 0.02 0.37 5.87 -104.62 -0.61 -0.24 16 26 C -0.19 -2.51 9.03 36.01 0.33 -2.18 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.40 4.74 -51.93 -0.25 1.16 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.41 6.69 8.84 -34.46 -0.30 6.38 16 34 H 0.09 1.48 7.93 -51.93 -0.41 1.06 16 35 H 0.12 2.42 4.35 -51.92 -0.23 2.19 16 36 H 0.07 1.04 5.69 -51.93 -0.30 0.75 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.08 0.89 5.87 -51.93 -0.30 0.58 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.64 5.88 -51.93 -0.31 0.34 16 43 H 0.06 0.51 8.08 -51.94 -0.42 0.09 16 44 H 0.08 0.97 7.56 -51.93 -0.39 0.58 16 45 H 0.13 1.94 4.60 -52.23 -0.24 1.70 16 46 H 0.08 0.82 5.67 -51.93 -0.29 0.53 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -31.77 357.57 -9.12 -40.89 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.69 Total: 10.59 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: -2.05 Total: -35.90 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.75 Total: -46.12 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.59 Total: -40.81 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.37 Total: 15.53 kcal Atomic # 16 Polarization: 50.98 SS G_CDS: -0.55 Total: 50.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.77 -9.12 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186438834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.233 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds