Wall clock time and date at job start Tue Mar 31 2020 14:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47530 * 2 1 4 4 H 1.09003 * 109.47058 * 305.35678 * 3 2 1 5 5 C 1.50704 * 109.47332 * 185.35805 * 3 2 1 6 6 H 1.07999 * 119.99668 * 244.88842 * 5 3 2 7 7 C 1.37875 * 119.99859 * 64.89231 * 5 3 2 8 8 N 1.31518 * 119.99982 * 192.30687 * 7 5 3 9 9 Si 1.86800 * 120.00074 * 12.30602 * 7 5 3 10 10 H 1.48497 * 109.47246 * 95.28562 * 9 7 5 11 11 H 1.48500 * 109.47023 * 215.28314 * 9 7 5 12 12 H 1.48503 * 109.47194 * 335.28225 * 9 7 5 13 13 N 1.46504 * 109.47217 * 65.35619 * 3 2 1 14 14 S 1.65590 * 120.00171 * 215.25471 * 13 3 2 15 15 O 1.42098 * 106.40412 * 311.69303 * 14 13 3 16 16 O 1.42098 * 106.40203 * 178.76763 * 14 13 3 17 17 C 1.76209 * 107.21729 * 65.23116 * 14 13 3 18 18 C 1.38231 * 120.00048 * 259.57958 * 17 14 13 19 19 C 1.50704 * 120.00157 * 359.97438 * 18 17 14 20 20 C 1.38238 * 119.99975 * 180.23543 * 18 17 14 21 21 C 1.50696 * 120.00069 * 179.76933 * 20 18 17 22 22 C 1.38235 * 119.99701 * 359.48973 * 20 18 17 23 23 C 1.38233 * 120.00192 * 0.26021 * 22 20 18 24 24 C 1.50701 * 119.99839 * 180.02562 * 23 22 20 25 25 C 1.38233 * 120.00058 * 359.97438 * 23 22 20 26 26 C 1.50700 * 120.00245 * 180.02562 * 25 23 22 27 27 H 1.09002 * 109.47289 * 184.89631 * 1 2 3 28 28 H 1.09002 * 109.46570 * 304.89499 * 1 2 3 29 29 H 1.09003 * 109.47302 * 64.88959 * 1 2 3 30 30 H 1.09001 * 109.46664 * 240.00087 * 2 1 3 31 31 H 1.09002 * 109.46992 * 120.00654 * 2 1 3 32 32 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 33 33 H 0.97002 * 119.99567 * 35.25723 * 13 3 2 34 34 H 1.08998 * 109.46975 * 277.27025 * 19 18 17 35 35 H 1.09008 * 109.46938 * 37.27062 * 19 18 17 36 36 H 1.08998 * 109.47338 * 157.27014 * 19 18 17 37 37 H 1.09003 * 109.46737 * 269.72654 * 21 20 18 38 38 H 1.08994 * 109.47653 * 149.72431 * 21 20 18 39 39 H 1.08995 * 109.47421 * 29.72277 * 21 20 18 40 40 H 1.08001 * 119.99547 * 180.27538 * 22 20 18 41 41 H 1.09003 * 109.46823 * 90.00301 * 24 23 22 42 42 H 1.09000 * 109.46758 * 209.99733 * 24 23 22 43 43 H 1.08989 * 109.47561 * 329.99767 * 24 23 22 44 44 H 1.08993 * 109.47300 * 97.81481 * 26 25 23 45 45 H 1.09007 * 109.47010 * 217.81839 * 26 25 23 46 46 H 1.09001 * 109.47287 * 337.81440 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6006 1.9832 -0.8381 5 6 3.5413 1.4444 -0.1327 6 1 4.1542 1.8155 0.6754 7 6 4.1320 0.9726 -1.2856 8 7 5.4272 0.7462 -1.3157 9 14 3.0928 0.6549 -2.8050 10 1 3.1418 1.8423 -3.6954 11 1 3.6229 -0.5286 -3.5287 12 1 1.6877 0.3982 -2.3989 13 7 1.6599 2.0948 1.2554 14 16 1.2573 3.7010 1.2650 15 8 2.2781 4.3749 0.5418 16 8 0.9146 4.0208 2.6065 17 6 -0.2195 3.8742 0.3195 18 6 -0.1554 4.3222 -0.9866 19 6 1.1774 4.6631 -1.6018 20 6 -1.3145 4.4627 -1.7268 21 6 -1.2451 4.9560 -3.1490 22 6 -2.5366 4.1451 -1.1641 23 6 -2.6002 3.6922 0.1403 24 6 -3.9324 3.3454 0.7534 25 6 -1.4416 3.5563 0.8821 26 6 -1.5108 3.0620 2.3040 27 1 -0.3634 -1.0239 0.0877 28 1 -0.3632 0.5879 0.8429 29 1 -0.3634 0.4361 -0.9306 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8428 0.4139 -2.1267 33 1 1.6441 1.5859 2.0811 34 1 1.4623 5.6750 -1.3138 35 1 1.9311 3.9590 -1.2490 36 1 1.1028 4.6017 -2.6875 37 1 -1.3275 6.0429 -3.1609 38 1 -2.0637 4.5233 -3.7241 39 1 -0.2940 4.6589 -3.5907 40 1 -3.4417 4.2506 -1.7439 41 1 -4.1541 2.2940 0.5701 42 1 -3.8963 3.5272 1.8276 43 1 -4.7103 3.9641 0.3062 44 1 -1.2907 1.9948 2.3288 45 1 -0.7809 3.5978 2.9109 46 1 -2.5110 3.2360 2.7009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186438834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:02 Heat of formation + Delta-G solvation = -70.424707 kcal Electronic energy + Delta-G solvation = -28039.742216 eV Core-core repulsion = 24441.609420 eV Total energy + Delta-G solvation = -3598.132797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95139 -38.62607 -37.90371 -36.89951 -35.77652 -34.27724 -33.88942 -32.51305 -30.48071 -30.04461 -29.03109 -26.73126 -25.18874 -24.51865 -23.92954 -22.15469 -20.53544 -20.40336 -19.15736 -18.49469 -17.72381 -17.64563 -17.02918 -16.31632 -16.20454 -15.68927 -15.52330 -15.06922 -14.71453 -14.58643 -14.43012 -14.28381 -14.22726 -13.94711 -13.71254 -13.70462 -13.51766 -13.48369 -13.26615 -13.15569 -12.98034 -12.93650 -12.65747 -12.63710 -12.46093 -12.28251 -12.16726 -11.83370 -11.74711 -11.65807 -11.48467 -11.23530 -11.14078 -10.64860 -10.10136 -10.00865 -9.25313 -8.27435 -6.28056 -0.49730 -0.12273 0.30836 1.32749 1.38140 1.44720 2.15116 2.34898 2.46811 2.84779 3.06556 3.44416 3.75990 3.78438 3.87060 4.08895 4.23066 4.28787 4.31022 4.34043 4.45956 4.48965 4.61479 4.65089 4.66515 4.70924 4.74037 4.79280 4.84884 4.91208 4.98006 5.07825 5.12783 5.15176 5.18090 5.20510 5.26976 5.35798 5.43538 5.52403 5.54388 5.56799 5.61589 5.65432 6.00781 6.26140 6.43470 6.75997 7.34388 8.90149 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.006262 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.354930 B = 4470.085497 C = 4924.075492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.264 3.736 4 H 0.036 0.964 5 C -0.528 4.528 6 H 0.034 0.966 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.212 1.212 13 N -1.093 6.093 14 S 2.690 3.310 15 O -0.981 6.981 16 O -0.986 6.986 17 C -0.681 4.681 18 C 0.000 4.000 19 C -0.158 4.158 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.057 4.057 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.011 3.989 26 C -0.192 4.192 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.418 0.582 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.828 3.653 -0.371 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.157 3.843 4 H 0.054 0.946 5 C -0.567 4.567 6 H 0.053 0.947 7 C -0.176 4.176 8 N -0.581 5.581 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.134 1.134 13 N -0.853 5.853 14 S 2.784 3.216 15 O -0.971 6.971 16 O -0.976 6.976 17 C -0.771 4.771 18 C -0.002 4.002 19 C -0.215 4.215 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.075 4.075 23 C -0.120 4.120 24 C -0.169 4.169 25 C 0.009 3.991 26 C -0.248 4.248 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.178 0.822 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.192 4.357 -0.203 22.617 hybrid contribution 0.417 -0.471 -0.768 0.992 sum -21.775 3.886 -0.970 22.141 Atomic orbital electron populations 1.21820 0.94804 1.02185 1.01619 1.22129 0.96040 0.96823 1.02069 1.18632 0.92650 0.91628 0.81395 0.94621 1.21579 0.91809 1.41164 1.02194 0.94745 1.25686 0.95810 0.94509 1.01628 1.70087 1.12529 1.46453 1.29062 0.86538 0.82562 0.78243 0.79962 1.20140 1.20724 1.13438 1.55076 1.83740 1.29487 1.16995 1.01506 0.74162 0.72985 0.72902 1.93590 1.57016 1.73404 1.73097 1.93361 1.84424 1.83649 1.36202 1.30231 1.17987 1.19682 1.09214 1.19599 0.96508 0.92761 0.91332 1.21619 0.93729 1.04281 1.01854 1.20155 0.92302 1.01946 0.98002 1.20932 1.03783 1.02081 0.90542 1.21528 0.97734 0.93855 0.94379 1.20214 0.95992 1.01211 0.94601 1.20920 0.91513 1.02903 1.01548 1.19601 0.90932 0.92214 0.96316 1.22023 1.07469 1.03328 0.91964 0.91278 0.91799 0.93811 0.92527 0.91452 0.92579 0.74689 0.89834 0.90115 0.89528 0.89874 0.89277 0.91454 0.82159 0.89926 0.90224 0.89750 0.89081 0.87409 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.86 71.98 0.71 -3.57 16 2 C -0.13 -4.93 4.75 30.59 0.15 -4.79 16 3 C 0.26 11.55 1.64 44.24 0.07 11.62 16 4 H 0.04 1.59 5.23 -2.39 -0.01 1.57 16 5 C -0.53 -29.59 9.29 25.60 0.24 -29.35 16 6 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 7 C 0.02 1.26 5.37 84.65 0.45 1.71 16 8 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 9 Si 0.90 41.49 25.72 68.60 1.76 43.25 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.21 -8.42 5.33 99.48 0.53 -7.89 16 13 N -1.09 -42.23 4.84 -172.52 -0.84 -43.07 16 14 S 2.69 105.45 5.08 -56.49 -0.29 105.16 16 15 O -0.98 -46.07 13.42 -128.00 -1.72 -47.79 16 16 O -0.99 -38.51 14.46 -128.00 -1.85 -40.36 16 17 C -0.68 -22.81 5.81 22.27 0.13 -22.68 16 18 C 0.00 -0.01 5.88 -19.86 -0.12 -0.13 16 19 C -0.16 -5.68 8.01 71.24 0.57 -5.11 16 20 C -0.12 -3.14 5.88 -19.87 -0.12 -3.25 16 21 C -0.12 -2.26 9.60 71.23 0.68 -1.58 16 22 C -0.06 -1.19 9.36 22.27 0.21 -0.98 16 23 C -0.12 -2.61 5.88 -19.87 -0.12 -2.73 16 24 C -0.11 -1.55 9.59 71.24 0.68 -0.87 16 25 C 0.01 0.30 5.87 -19.87 -0.12 0.18 16 26 C -0.19 -4.59 9.03 71.24 0.64 -3.95 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.68 7.06 -2.39 -0.02 1.66 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 2.25 4.74 -2.39 -0.01 2.24 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.42 13.98 8.84 -96.75 -0.86 13.13 16 34 H 0.08 2.93 7.93 -2.39 -0.02 2.92 16 35 H 0.08 3.51 4.35 -2.38 -0.01 3.50 16 36 H 0.09 2.64 5.69 -2.39 -0.01 2.63 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.07 1.41 5.87 -2.39 -0.01 1.40 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.00 5.88 -2.39 -0.01 0.98 16 43 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 44 H 0.09 1.94 7.56 -2.39 -0.02 1.93 16 45 H 0.11 3.12 4.60 -7.14 -0.03 3.09 16 46 H 0.11 1.86 5.67 -2.39 -0.01 1.84 16 Total: -1.00 -74.13 357.57 1.40 -72.72 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.04 Total: 33.81 kcal Atomic # 6 Polarization: -69.54 SS G_CDS: 4.07 Total: -65.47 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -0.54 Total: -101.32 kcal Atomic # 8 Polarization: -84.58 SS G_CDS: -3.57 Total: -88.15 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.76 Total: 43.25 kcal Atomic # 16 Polarization: 105.45 SS G_CDS: -0.29 Total: 105.16 kcal Total: -74.13 1.40 -72.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186438834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.299 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds