Wall clock time and date at job start Tue Mar 31 2020 14:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 H 1.08997 * 109.46934 * 55.00272 * 3 2 1 5 5 C 1.50703 * 109.46699 * 174.99522 * 3 2 1 6 6 H 1.08005 * 119.99687 * 120.00382 * 5 3 2 7 7 C 1.37872 * 120.00185 * 299.99911 * 5 3 2 8 8 N 1.31514 * 119.99967 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99988 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47013 * 90.00122 * 9 7 5 11 11 H 1.48499 * 109.47070 * 209.99827 * 9 7 5 12 12 H 1.48497 * 109.47377 * 329.99699 * 9 7 5 13 13 O 1.45195 * 109.47368 * 294.99636 * 3 2 1 14 14 C 1.34705 * 117.00019 * 90.00149 * 13 3 2 15 15 O 1.21475 * 120.00073 * 359.97438 * 14 13 3 16 16 C 1.47749 * 120.00151 * 180.02562 * 14 13 3 17 17 C 1.39716 * 120.08780 * 353.47071 * 16 14 13 18 18 C 1.38003 * 120.09635 * 180.02562 * 17 16 14 19 19 C 1.38162 * 120.28260 * 359.96511 * 18 17 16 20 20 C 1.39449 * 120.17671 * 359.97438 * 19 18 17 21 21 C 1.48364 * 120.05073 * 180.02562 * 20 19 18 22 22 C 1.39337 * 119.72556 * 6.95712 * 21 20 19 23 23 C 1.38403 * 119.06742 * 179.74981 * 22 21 20 24 24 C 1.38786 * 118.50801 * 0.50996 * 23 22 21 25 25 C 1.38246 * 119.36945 * 359.72829 * 24 23 22 26 26 N 1.31765 * 120.88963 * 0.02562 * 25 24 23 27 27 C 1.39109 * 119.90154 * 359.79225 * 20 19 18 28 28 C 1.50706 * 120.14119 * 180.22656 * 27 20 19 29 29 H 1.08993 * 109.47617 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46460 * 60.00075 * 1 2 3 31 31 H 1.08999 * 109.47256 * 300.00572 * 1 2 3 32 32 H 1.09000 * 109.46288 * 120.00050 * 2 1 3 33 33 H 1.09003 * 109.46850 * 239.99730 * 2 1 3 34 34 H 0.97004 * 120.00371 * 180.02562 * 8 7 5 35 35 H 1.07999 * 119.94752 * 0.02562 * 17 16 14 36 36 H 1.07997 * 119.85944 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.91728 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.46507 * 359.97438 * 22 21 20 39 39 H 1.07998 * 120.74186 * 180.23588 * 23 22 21 40 40 H 1.08002 * 120.31363 * 179.71009 * 24 23 22 41 41 H 1.07994 * 119.55291 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.47046 * 273.02932 * 28 27 20 43 43 H 1.08995 * 109.46748 * 33.02930 * 28 27 20 44 44 H 1.08994 * 109.46681 * 153.02703 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 5.4539 0.8803 1.3365 9 14 3.0962 0.1089 2.5702 10 1 2.8754 -1.3272 2.2635 11 1 3.7934 0.2348 3.8752 12 1 1.7876 0.8073 2.6387 13 8 1.6560 2.0917 -1.2407 14 6 0.4687 2.7277 -1.2561 15 8 -0.2271 2.7393 -0.2604 16 6 0.0121 3.4103 -2.4843 17 6 0.8652 3.5151 -3.5858 18 6 0.4391 4.1531 -4.7329 19 6 -0.8318 4.6908 -4.7999 20 6 -1.6934 4.5916 -3.7079 21 6 -3.0578 5.1695 -3.7831 22 6 -3.5259 5.6806 -4.9919 23 6 -4.8028 6.2117 -5.0479 24 6 -5.5665 6.2239 -3.8892 25 6 -5.0370 5.7044 -2.7226 26 7 -3.8199 5.2001 -2.6980 27 6 -1.2733 3.9459 -2.5496 28 6 -2.2018 3.8312 -1.3680 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 5.8770 0.4818 2.1131 35 1 1.8596 3.0963 -3.5393 36 1 1.1019 4.2323 -5.5819 37 1 -1.1593 5.1884 -5.7007 38 1 -2.9025 5.6593 -5.8735 39 1 -5.1943 6.6116 -5.9716 40 1 -6.5649 6.6356 -3.8987 41 1 -5.6289 5.7121 -1.8193 42 1 -2.1073 4.7199 -0.7441 43 1 -3.2292 3.7423 -1.7207 44 1 -1.9401 2.9483 -0.7849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187949016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:28 Heat of formation + Delta-G solvation = -7.087815 kcal Electronic energy + Delta-G solvation = -27040.863627 eV Core-core repulsion = 23310.033372 eV Total energy + Delta-G solvation = -3730.830254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82774 -39.95473 -38.49375 -36.04530 -33.80792 -33.37452 -32.80602 -32.00472 -31.85537 -29.78460 -27.84626 -27.00671 -24.63379 -23.71691 -23.41908 -22.59238 -21.28756 -20.73040 -19.77051 -17.91101 -17.07568 -16.72883 -16.31077 -16.23092 -15.88250 -15.67359 -15.33315 -14.86605 -14.62278 -14.35069 -14.00612 -13.52902 -13.47394 -13.22903 -13.13678 -12.79734 -12.37908 -12.17711 -12.05255 -11.91156 -11.83346 -11.73444 -11.67102 -11.38573 -11.20127 -11.08968 -10.73370 -10.22633 -10.01843 -9.89883 -9.81368 -9.59505 -9.53231 -9.06481 -8.91998 -8.80473 -8.63835 -8.32933 -6.22145 -4.24330 0.33917 0.94119 1.01533 1.59969 2.94181 3.19534 3.31988 3.34830 3.45056 3.57922 3.89897 3.96956 4.27407 4.39237 4.55534 4.69375 4.80692 4.86660 4.88549 5.07587 5.09691 5.20672 5.27749 5.39002 5.46687 5.68918 5.75846 5.83061 5.85036 5.91879 5.94649 6.01133 6.11984 6.20540 6.28562 6.32144 6.40887 6.45304 6.58727 6.64651 6.68118 6.75954 6.77831 6.90719 7.13640 7.39839 7.56400 7.72596 8.25306 8.61868 8.85167 9.35065 10.89834 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.002995 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.991347 B = 9345.168908 C =10106.755703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.048 0.952 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.336 6.336 14 C 0.497 3.503 15 O -0.503 6.503 16 C -0.128 4.128 17 C -0.042 4.042 18 C -0.147 4.147 19 C -0.068 4.068 20 C -0.083 4.083 21 C 0.180 3.820 22 C -0.167 4.167 23 C -0.072 4.072 24 C -0.182 4.182 25 C 0.101 3.899 26 N -0.466 5.466 27 C 0.023 3.977 28 C -0.138 4.138 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.269 0.731 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.158 0.842 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 9.321 -14.396 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.184 1.184 13 O -0.252 6.252 14 C 0.342 3.658 15 O -0.395 6.395 16 C -0.129 4.129 17 C -0.060 4.060 18 C -0.165 4.165 19 C -0.087 4.087 20 C -0.084 4.084 21 C 0.044 3.956 22 C -0.187 4.187 23 C -0.098 4.098 24 C -0.202 4.202 25 C -0.056 4.056 26 N -0.175 5.175 27 C 0.022 3.978 28 C -0.194 4.194 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.175 0.825 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.666 8.918 -13.177 25.297 hybrid contribution -0.731 -0.110 -0.044 0.741 sum -20.398 8.807 -13.221 25.854 Atomic orbital electron populations 1.21905 0.96958 1.00011 1.01837 1.22360 0.94397 0.99588 1.02176 1.20982 0.96293 0.88053 0.80250 0.93463 1.20788 0.87709 1.39845 1.07851 0.89501 1.24727 0.94942 0.95285 0.97366 1.69835 1.08495 1.44363 1.29829 0.86999 0.81073 0.80128 0.81255 1.19945 1.21734 1.18418 1.86543 1.33781 1.62403 1.42456 1.20964 0.80712 0.76655 0.87444 1.90680 1.54200 1.59272 1.35342 1.19208 0.95148 1.04538 0.94055 1.21737 0.99815 0.93359 0.91111 1.21008 0.96170 1.00623 0.98670 1.21353 0.93368 0.96922 0.97049 1.18234 0.92214 1.03071 0.94851 1.19750 0.92721 0.93993 0.89118 1.22065 0.97022 1.00745 0.98880 1.21516 0.93557 0.96071 0.98677 1.22175 1.01481 1.02405 0.94136 1.22908 0.91839 0.92973 0.97900 1.68187 1.05603 1.14664 1.29081 1.20220 0.92473 0.90021 0.95059 1.21696 0.98758 1.04274 0.94653 0.93981 0.93542 0.92460 0.91815 0.91252 0.92076 0.83715 0.84856 0.85354 0.84551 0.84770 0.84893 0.82519 0.90689 0.88862 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.56 37.16 0.32 -2.67 16 2 C -0.15 -3.36 5.14 -26.73 -0.14 -3.50 16 3 C 0.20 4.97 1.84 -27.88 -0.05 4.92 16 4 H 0.05 1.26 6.22 -51.93 -0.32 0.93 16 5 C -0.52 -14.97 9.48 -34.44 -0.33 -15.30 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.88 21.70 24.41 -169.99 -4.15 17.55 16 10 H -0.27 -6.48 6.83 56.52 0.39 -6.09 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 O -0.34 -7.69 9.07 -40.51 -0.37 -8.06 16 14 C 0.50 10.22 6.28 34.62 0.22 10.44 16 15 O -0.50 -10.95 10.37 -19.25 -0.20 -11.14 16 16 C -0.13 -2.18 5.87 -105.02 -0.62 -2.80 16 17 C -0.04 -0.60 9.61 -39.12 -0.38 -0.98 16 18 C -0.15 -1.64 10.02 -39.70 -0.40 -2.03 16 19 C -0.07 -0.72 9.41 -39.16 -0.37 -1.09 16 20 C -0.08 -1.08 5.87 -104.95 -0.62 -1.70 16 21 C 0.18 2.12 6.65 -82.94 -0.55 1.57 16 22 C -0.17 -1.47 9.45 -39.11 -0.37 -1.84 16 23 C -0.07 -0.52 10.17 -39.32 -0.40 -0.92 16 24 C -0.18 -1.31 10.11 -39.38 -0.40 -1.71 16 25 C 0.10 0.92 11.17 -17.58 -0.20 0.73 16 26 N -0.47 -5.66 6.17 -9.78 -0.06 -5.72 16 27 C 0.02 0.37 5.95 -103.86 -0.62 -0.25 16 28 C -0.14 -2.19 7.80 36.01 0.28 -1.91 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.91 6.06 -51.92 -0.31 0.59 16 31 H 0.06 1.17 7.79 -51.93 -0.40 0.77 16 32 H 0.06 1.50 3.21 -51.93 -0.17 1.33 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.15 2.08 7.62 -52.49 -0.40 1.68 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.92 6.22 -52.49 -0.33 0.60 16 38 H 0.14 0.87 6.24 -52.49 -0.33 0.54 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.37 5.37 -51.93 -0.28 1.09 16 44 H 0.09 1.69 5.17 -51.96 -0.27 1.42 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -32.63 350.18 -8.80 -41.44 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.38 Total: 3.45 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -4.70 Total: -16.84 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.71 Total: -31.67 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.57 Total: -19.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.63 -8.80 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187949016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.350 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds