Wall clock time and date at job start Tue Mar 31 2020 14:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 H 1.08997 * 109.46934 * 55.00272 * 3 2 1 5 5 C 1.50703 * 109.46699 * 174.99522 * 3 2 1 6 6 H 1.08005 * 119.99687 * 120.00382 * 5 3 2 7 7 C 1.37872 * 120.00185 * 299.99911 * 5 3 2 8 8 N 1.31514 * 119.99967 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99988 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47013 * 90.00122 * 9 7 5 11 11 H 1.48499 * 109.47070 * 209.99827 * 9 7 5 12 12 H 1.48497 * 109.47377 * 329.99699 * 9 7 5 13 13 O 1.45195 * 109.47368 * 294.99636 * 3 2 1 14 14 C 1.34705 * 117.00019 * 90.00149 * 13 3 2 15 15 O 1.21475 * 120.00073 * 359.97438 * 14 13 3 16 16 C 1.47749 * 120.00151 * 180.02562 * 14 13 3 17 17 C 1.39716 * 120.08780 * 353.47071 * 16 14 13 18 18 C 1.38003 * 120.09635 * 180.02562 * 17 16 14 19 19 C 1.38162 * 120.28260 * 359.96511 * 18 17 16 20 20 C 1.39449 * 120.17671 * 359.97438 * 19 18 17 21 21 C 1.48364 * 120.05073 * 180.02562 * 20 19 18 22 22 C 1.39337 * 119.72556 * 6.95712 * 21 20 19 23 23 C 1.38403 * 119.06742 * 179.74981 * 22 21 20 24 24 C 1.38786 * 118.50801 * 0.50996 * 23 22 21 25 25 C 1.38246 * 119.36945 * 359.72829 * 24 23 22 26 26 N 1.31765 * 120.88963 * 0.02562 * 25 24 23 27 27 C 1.39109 * 119.90154 * 359.79225 * 20 19 18 28 28 C 1.50706 * 120.14119 * 180.22656 * 27 20 19 29 29 H 1.08993 * 109.47617 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46460 * 60.00075 * 1 2 3 31 31 H 1.08999 * 109.47256 * 300.00572 * 1 2 3 32 32 H 1.09000 * 109.46288 * 120.00050 * 2 1 3 33 33 H 1.09003 * 109.46850 * 239.99730 * 2 1 3 34 34 H 0.97004 * 120.00371 * 180.02562 * 8 7 5 35 35 H 1.07999 * 119.94752 * 0.02562 * 17 16 14 36 36 H 1.07997 * 119.85944 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.91728 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.46507 * 359.97438 * 22 21 20 39 39 H 1.07998 * 120.74186 * 180.23588 * 23 22 21 40 40 H 1.08002 * 120.31363 * 179.71009 * 24 23 22 41 41 H 1.07994 * 119.55291 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.47046 * 273.02932 * 28 27 20 43 43 H 1.08995 * 109.46748 * 33.02930 * 28 27 20 44 44 H 1.08994 * 109.46681 * 153.02703 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 5.4539 0.8803 1.3365 9 14 3.0962 0.1089 2.5702 10 1 2.8754 -1.3272 2.2635 11 1 3.7934 0.2348 3.8752 12 1 1.7876 0.8073 2.6387 13 8 1.6560 2.0917 -1.2407 14 6 0.4687 2.7277 -1.2561 15 8 -0.2271 2.7393 -0.2604 16 6 0.0121 3.4103 -2.4843 17 6 0.8652 3.5151 -3.5858 18 6 0.4391 4.1531 -4.7329 19 6 -0.8318 4.6908 -4.7999 20 6 -1.6934 4.5916 -3.7079 21 6 -3.0578 5.1695 -3.7831 22 6 -3.5259 5.6806 -4.9919 23 6 -4.8028 6.2117 -5.0479 24 6 -5.5665 6.2239 -3.8892 25 6 -5.0370 5.7044 -2.7226 26 7 -3.8199 5.2001 -2.6980 27 6 -1.2733 3.9459 -2.5496 28 6 -2.2018 3.8312 -1.3680 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 5.8770 0.4818 2.1131 35 1 1.8596 3.0963 -3.5393 36 1 1.1019 4.2323 -5.5819 37 1 -1.1593 5.1884 -5.7007 38 1 -2.9025 5.6593 -5.8735 39 1 -5.1943 6.6116 -5.9716 40 1 -6.5649 6.6356 -3.8987 41 1 -5.6289 5.7121 -1.8193 42 1 -2.1073 4.7199 -0.7441 43 1 -3.2292 3.7423 -1.7207 44 1 -1.9401 2.9483 -0.7849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187949016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:27 Heat of formation + Delta-G solvation = -25.024212 kcal Electronic energy + Delta-G solvation = -27041.641407 eV Core-core repulsion = 23310.033372 eV Total energy + Delta-G solvation = -3731.608035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90985 -41.17514 -39.62551 -37.75643 -35.59822 -34.39309 -34.00448 -33.61099 -32.86709 -30.71094 -29.74453 -28.16712 -25.72621 -24.96695 -24.41278 -24.08225 -22.58280 -21.92274 -21.38130 -19.41486 -18.58827 -18.10894 -17.62684 -17.35198 -17.10285 -16.79125 -16.63861 -16.02755 -15.84728 -15.48118 -15.18922 -14.99656 -14.72818 -14.46709 -14.25473 -14.03156 -13.94163 -13.73897 -13.59717 -13.25579 -13.18819 -13.05857 -12.93856 -12.82081 -12.63878 -12.57544 -12.07036 -12.03458 -11.54317 -11.49076 -11.16894 -11.01857 -10.91339 -10.75429 -10.67151 -9.95925 -9.82435 -9.20849 -8.46256 -6.54506 -0.52005 -0.13243 0.38607 0.73865 1.21164 1.29197 1.39097 1.59648 1.87195 2.18039 2.62975 2.85841 3.06541 3.14911 3.63349 3.72759 3.88339 4.03696 4.06000 4.07489 4.11417 4.15339 4.19487 4.22736 4.27776 4.47776 4.51146 4.56448 4.72889 4.81241 4.88612 4.89366 4.92460 4.93501 4.98281 5.01286 5.13080 5.25045 5.30041 5.32784 5.34622 5.37987 5.47117 5.51329 5.73135 5.79619 5.92313 6.16259 6.48839 6.89209 7.05712 7.10532 8.69603 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.002995 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.991347 B = 9345.168908 C =10106.755703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.202 3.798 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.047 0.953 7 C 0.032 3.968 8 N -0.929 5.929 9 Si 0.936 3.064 10 H -0.249 1.249 11 H -0.283 1.283 12 H -0.257 1.257 13 O -0.348 6.348 14 C 0.491 3.509 15 O -0.523 6.523 16 C -0.155 4.155 17 C -0.058 4.058 18 C -0.131 4.131 19 C -0.051 4.051 20 C -0.082 4.082 21 C 0.144 3.856 22 C -0.162 4.162 23 C -0.072 4.072 24 C -0.170 4.170 25 C 0.080 3.920 26 N -0.503 5.503 27 C 0.000 4.000 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.275 0.725 35 H 0.135 0.865 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.065 10.129 -17.182 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.148 3.852 4 H 0.047 0.953 5 C -0.576 4.576 6 H 0.066 0.934 7 C -0.168 4.168 8 N -0.567 5.567 9 Si 0.761 3.239 10 H -0.174 1.174 11 H -0.210 1.210 12 H -0.182 1.182 13 O -0.264 6.264 14 C 0.338 3.662 15 O -0.415 6.415 16 C -0.157 4.157 17 C -0.077 4.077 18 C -0.148 4.148 19 C -0.069 4.069 20 C -0.082 4.082 21 C 0.009 3.991 22 C -0.181 4.181 23 C -0.098 4.098 24 C -0.189 4.189 25 C -0.077 4.077 26 N -0.213 5.213 27 C -0.001 4.001 28 C -0.180 4.180 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.190 0.810 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.188 0.812 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.760 9.728 -15.981 29.462 hybrid contribution 0.119 -0.164 0.654 0.685 sum -22.640 9.564 -15.327 28.965 Atomic orbital electron populations 1.21803 0.94665 1.01949 1.01284 1.22260 0.96377 0.97426 1.02169 1.20665 0.94024 0.89729 0.80790 0.95346 1.20958 0.89554 1.39850 1.07263 0.93430 1.25527 0.96086 0.95576 0.99575 1.69952 1.10276 1.45465 1.31011 0.86033 0.79299 0.80361 0.78188 1.17428 1.20956 1.18163 1.86527 1.35557 1.63145 1.41206 1.21714 0.79551 0.76110 0.88796 1.90667 1.54376 1.60025 1.36464 1.19119 0.96557 1.06611 0.93365 1.21787 0.99241 0.94747 0.91891 1.21418 0.96932 0.98349 0.98129 1.21857 0.92250 0.95194 0.97613 1.18561 0.93601 1.01799 0.94276 1.19793 0.92422 0.96339 0.90548 1.22362 0.98024 0.99377 0.98335 1.21996 0.92793 0.95006 0.99957 1.22567 1.02634 1.00420 0.93324 1.23270 0.91249 0.93510 0.99650 1.67969 1.07060 1.15979 1.30287 1.20257 0.91883 0.91689 0.96258 1.21492 0.99727 1.02170 0.94608 0.90644 0.93859 0.93354 0.92120 0.90834 0.91516 0.84726 0.81004 0.80701 0.81809 0.81170 0.81812 0.81205 0.92220 0.87790 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.56 71.98 0.62 -4.93 16 2 C -0.14 -6.65 5.14 30.60 0.16 -6.49 16 3 C 0.20 10.62 1.84 29.85 0.06 10.67 16 4 H 0.03 1.60 6.22 -2.39 -0.01 1.58 16 5 C -0.54 -32.42 9.48 25.60 0.24 -32.18 16 6 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 7 C 0.03 1.91 5.45 84.65 0.46 2.37 16 8 N -0.93 -57.70 13.96 21.45 0.30 -57.40 16 9 Si 0.94 45.30 24.41 68.60 1.67 46.98 16 10 H -0.25 -11.09 6.83 99.48 0.68 -10.41 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -12.28 6.53 99.48 0.65 -11.64 16 13 O -0.35 -16.94 9.07 -56.15 -0.51 -17.45 16 14 C 0.49 21.52 6.28 70.34 0.44 21.96 16 15 O -0.52 -24.27 10.37 19.92 0.21 -24.06 16 16 C -0.16 -5.53 5.87 -20.12 -0.12 -5.65 16 17 C -0.06 -1.69 9.61 22.57 0.22 -1.47 16 18 C -0.13 -2.57 10.02 22.20 0.22 -2.35 16 19 C -0.05 -0.90 9.41 22.54 0.21 -0.69 16 20 C -0.08 -2.02 5.87 -20.08 -0.12 -2.13 16 21 C 0.14 3.12 6.65 41.98 0.28 3.40 16 22 C -0.16 -2.17 9.45 22.57 0.21 -1.96 16 23 C -0.07 -0.69 10.17 22.44 0.23 -0.46 16 24 C -0.17 -1.83 10.11 22.40 0.23 -1.60 16 25 C 0.08 1.33 11.17 84.70 0.95 2.28 16 26 N -0.50 -11.90 6.17 -184.84 -1.14 -13.04 16 27 C 0.00 0.01 5.95 -19.37 -0.12 -0.11 16 28 C -0.12 -4.19 7.80 71.24 0.56 -3.64 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.04 1.72 6.06 -2.38 -0.01 1.71 16 31 H 0.05 1.99 7.79 -2.39 -0.02 1.97 16 32 H 0.06 2.80 3.21 -2.39 -0.01 2.80 16 33 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.13 4.08 7.62 -2.91 -0.02 4.06 16 36 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.18 1.45 6.22 -2.91 -0.02 1.43 16 38 H 0.16 1.13 6.24 -2.91 -0.02 1.12 16 39 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 3.21 5.37 -2.39 -0.01 3.20 16 44 H 0.07 2.61 5.17 -2.76 -0.01 2.60 16 Total: -1.00 -77.25 350.18 6.20 -71.04 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.95 Total: 16.91 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.72 Total: -22.98 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.84 Total: -70.44 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.30 Total: -41.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.98 kcal Total: -77.25 6.20 -71.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187949016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.019 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds