Wall clock time and date at job start Tue Mar 31 2020 16:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46650 * 2 1 4 4 N 1.46499 * 109.47186 * 119.99950 * 2 1 3 5 5 C 1.39944 * 119.99847 * 275.00377 * 4 2 1 6 6 C 1.38877 * 120.19381 * 359.44577 * 5 4 2 7 7 C 1.37892 * 120.26880 * 179.88951 * 6 5 4 8 8 C 1.39273 * 120.33644 * 0.60961 * 7 6 5 9 9 C 1.38858 * 119.00076 * 359.37728 * 8 7 6 10 10 C 1.37722 * 120.85835 * 0.42261 * 9 8 7 11 11 C 1.51665 * 107.04802 * 180.68035 * 9 8 7 12 12 C 1.54699 * 101.93585 * 15.49420 * 11 9 8 13 13 O 1.36273 * 129.78411 * 179.06252 * 8 7 6 14 14 C 1.50696 * 109.47127 * 240.00051 * 2 1 3 15 15 C 1.38296 * 119.93161 * 279.72637 * 14 2 1 16 16 C 1.38108 * 120.06759 * 179.72735 * 15 14 2 17 17 C 1.38869 * 119.93145 * 0.54671 * 16 15 14 18 18 O 1.35753 * 120.06952 * 179.74844 * 17 16 15 19 19 C 1.34832 * 116.99982 * 174.43968 * 18 17 16 20 20 H 1.08007 * 120.00021 * 5.05806 * 19 18 17 21 21 C 1.38656 * 120.00156 * 185.05359 * 19 18 17 22 22 N 1.31554 * 119.99953 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99675 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47315 * 89.99953 * 23 21 19 25 25 H 1.48500 * 109.47077 * 209.99742 * 23 21 19 26 26 H 1.48501 * 109.47153 * 329.99585 * 23 21 19 27 27 C 1.38881 * 119.86427 * 359.72800 * 17 16 15 28 28 C 1.38107 * 119.92922 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.47383 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47502 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47432 * 59.99990 * 1 2 3 32 32 H 0.96994 * 119.99706 * 94.72541 * 4 2 1 33 33 H 1.08000 * 119.86879 * 0.15596 * 6 5 4 34 34 H 1.08002 * 119.82968 * 180.30345 * 7 6 5 35 35 H 1.07997 * 120.04064 * 179.76794 * 10 9 8 36 36 H 1.09004 * 110.93421 * 133.65001 * 11 9 8 37 37 H 1.08998 * 110.93842 * 257.29220 * 11 9 8 38 38 H 1.08992 * 110.75177 * 92.98020 * 12 11 9 39 39 H 1.09001 * 110.74812 * 216.15410 * 12 11 9 40 40 H 1.08002 * 119.96823 * 0.02562 * 15 14 2 41 41 H 1.08004 * 120.03030 * 180.26831 * 16 15 14 42 42 H 0.97003 * 119.99627 * 180.02562 * 22 21 19 43 43 H 1.07993 * 120.03828 * 179.97438 * 27 17 16 44 44 H 1.08001 * 119.96459 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0076 2.4016 6 6 1.8336 1.3578 2.4657 7 6 1.9625 2.0467 3.6533 8 6 2.4248 1.3985 4.7959 9 6 2.7403 0.0482 4.7228 10 6 2.6092 -0.6448 3.5399 11 6 3.1928 -0.3783 6.1061 12 6 2.6938 0.7952 6.9819 13 8 2.6403 1.8880 6.0493 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0924 -1.2617 16 6 2.5260 -2.7465 -2.3900 17 6 2.9547 -2.0147 -3.4896 18 8 3.4068 -2.6546 -4.5982 19 6 3.6986 -1.8903 -5.6699 20 1 3.6474 -0.8140 -5.5957 21 6 4.0644 -2.4861 -6.8674 22 7 4.3495 -1.7403 -7.9129 23 14 4.1523 -4.3476 -6.9958 24 1 2.8322 -4.8772 -7.4222 25 1 5.1837 -4.7266 -7.9947 26 1 4.5110 -4.9186 -5.6728 27 6 2.9195 -0.6268 -3.4530 28 6 2.4581 0.0213 -2.3241 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2452 -1.6327 1.1535 33 1 1.4796 1.8695 1.5829 34 1 1.7083 3.0955 3.6962 35 1 2.8619 -1.6939 3.4970 36 1 2.7169 -1.3137 6.4004 37 1 4.2784 -0.4647 6.1514 38 1 1.7036 0.5826 7.3847 39 1 3.3994 1.0043 7.7859 40 1 1.7417 -2.6610 -0.4047 41 1 2.5522 -3.8259 -2.4153 42 1 4.6051 -2.1571 -8.7507 43 1 3.2526 -0.0549 -4.3064 44 1 2.4302 1.1006 -2.2952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193012074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:14 Heat of formation + Delta-G solvation = -1.673304 kcal Electronic energy + Delta-G solvation = -25799.340721 eV Core-core repulsion = 22068.745258 eV Total energy + Delta-G solvation = -3730.595463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08660 -39.55877 -38.50732 -37.07523 -34.98668 -32.75690 -32.48234 -31.52701 -30.39424 -29.35676 -28.25076 -27.82576 -25.41358 -23.74902 -23.07095 -22.40266 -22.03657 -21.20918 -19.95168 -17.98744 -17.60171 -17.47420 -17.07806 -16.73290 -16.23222 -15.36452 -14.84763 -14.58444 -14.17545 -14.08915 -13.92557 -13.79625 -13.71000 -13.47875 -13.20573 -13.13614 -12.85478 -12.72286 -12.68553 -12.36634 -12.34521 -12.09372 -11.93502 -11.61318 -11.42683 -11.14181 -10.88280 -10.80152 -10.75327 -10.64225 -10.20879 -9.52094 -9.45537 -8.95407 -8.93113 -8.38703 -7.43390 -7.13805 -6.48588 -4.15540 1.22220 1.50680 2.00606 2.05099 3.16913 3.18528 3.20930 3.34907 3.48444 3.70741 4.17467 4.24193 4.36415 4.45016 4.72132 4.73809 4.81094 4.93403 5.02269 5.03038 5.11861 5.19704 5.29610 5.37840 5.43719 5.47428 5.50451 5.56813 5.60699 5.72868 5.81387 5.90386 6.00667 6.03649 6.16810 6.24173 6.28653 6.35557 6.42146 6.46098 6.65836 6.88287 7.02053 7.11867 7.18188 7.41248 7.49797 7.71054 7.76341 7.95524 8.86183 9.47228 10.58735 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.002093 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.989563 B =13375.472892 C =13703.921026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.205 3.795 3 H 0.078 0.922 4 N -0.736 5.736 5 C 0.206 3.794 6 C -0.168 4.168 7 C -0.085 4.085 8 C 0.033 3.967 9 C -0.124 4.124 10 C -0.153 4.153 11 C -0.111 4.111 12 C 0.053 3.947 13 O -0.311 6.311 14 C -0.184 4.184 15 C -0.069 4.069 16 C -0.190 4.190 17 C 0.161 3.839 18 O -0.215 6.215 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.218 4.218 28 C -0.061 4.061 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.280 0.720 43 H 0.135 0.865 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 3.280 24.747 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.096 0.904 4 N -0.366 5.366 5 C 0.102 3.898 6 C -0.191 4.191 7 C -0.104 4.104 8 C -0.013 4.013 9 C -0.126 4.126 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.022 4.022 13 O -0.226 6.226 14 C -0.186 4.186 15 C -0.087 4.087 16 C -0.209 4.209 17 C 0.109 3.891 18 O -0.120 6.120 19 C -0.467 4.467 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.514 5.514 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.184 1.184 27 C -0.237 4.237 28 C -0.080 4.080 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.524 3.386 24.358 25.206 hybrid contribution 0.225 -1.206 -0.324 1.268 sum -5.299 2.181 24.034 24.708 Atomic orbital electron populations 1.22275 0.95612 1.02457 1.01668 1.19534 0.92942 0.95547 0.81963 0.90377 1.44982 1.72929 1.12264 1.06442 1.17645 0.94686 0.91375 0.86113 1.20415 1.07913 0.92909 0.97859 1.19977 1.00504 1.00029 0.89909 1.19247 1.02813 0.92563 0.86639 1.20417 1.02317 0.94544 0.95298 1.19646 1.07409 0.99863 0.90624 1.21797 1.02250 0.99488 0.91318 1.23708 1.01636 0.84725 0.92122 1.86812 1.88605 1.32493 1.14654 1.19287 1.09648 0.93664 0.95977 1.20307 0.98621 0.93353 0.96440 1.20175 1.08141 0.99332 0.93289 1.19141 0.91490 0.90976 0.87533 1.83574 1.72235 1.36717 1.19435 1.20774 1.46964 0.92169 0.86745 0.87551 1.24482 0.95561 1.00315 0.93636 1.69643 1.43794 1.36277 1.01671 0.86174 0.78338 0.83537 0.78810 1.19837 1.20712 1.18382 1.21272 1.07968 0.94329 1.00113 1.20603 0.96385 0.98585 0.92395 0.92343 0.92667 0.91655 0.76540 0.85088 0.85755 0.86111 0.89319 0.89244 0.91040 0.88086 0.87232 0.86472 0.90953 0.84770 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.44 37.16 0.35 -1.42 16 2 C 0.20 2.47 2.48 -69.09 -0.17 2.29 16 3 H 0.08 0.92 6.33 -51.93 -0.33 0.59 16 4 N -0.74 -8.40 5.21 -53.22 -0.28 -8.68 16 5 C 0.21 2.38 6.65 -83.66 -0.56 1.83 16 6 C -0.17 -1.89 8.88 -39.47 -0.35 -2.24 16 7 C -0.08 -0.96 10.06 -39.32 -0.40 -1.35 16 8 C 0.03 0.40 7.03 -38.97 -0.27 0.12 16 9 C -0.12 -1.36 6.27 -104.11 -0.65 -2.01 16 10 C -0.15 -1.68 9.89 -39.51 -0.39 -2.07 16 11 C -0.11 -0.86 7.12 -26.51 -0.19 -1.05 16 12 C 0.05 0.40 8.01 38.05 0.30 0.71 16 13 O -0.31 -3.57 11.11 -20.61 -0.23 -3.80 16 14 C -0.18 -2.77 4.96 -104.58 -0.52 -3.29 16 15 C -0.07 -1.06 9.05 -39.61 -0.36 -1.42 16 16 C -0.19 -3.54 9.99 -39.40 -0.39 -3.94 16 17 C 0.16 3.57 6.65 -39.11 -0.26 3.31 16 18 O -0.21 -5.51 8.59 0.03 0.00 -5.51 16 19 C -0.39 -10.76 9.95 30.89 0.31 -10.45 16 20 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -24.86 13.96 55.48 0.77 -24.09 16 23 Si 0.91 21.25 28.62 -169.99 -4.86 16.39 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.22 -4.46 9.17 -39.39 -0.36 -4.82 16 28 C -0.06 -1.02 9.66 -39.60 -0.38 -1.41 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.56 7.81 -51.93 -0.41 0.15 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.40 4.32 6.87 -40.82 -0.28 4.04 16 33 H 0.13 1.32 6.19 -52.49 -0.32 1.00 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 1.37 6.89 -52.49 -0.36 1.01 16 41 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 42 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.13 2.91 5.64 -52.49 -0.30 2.62 16 44 H 0.11 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -29.84 364.07 -9.14 -38.98 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.64 Total: 6.78 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -4.39 Total: -25.56 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.50 Total: -32.77 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.23 Total: -9.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.84 -9.14 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193012074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.306 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds