Wall clock time and date at job start Tue Mar 31 2020 16:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46839 * 2 1 4 4 C 1.50701 * 109.46963 * 119.99939 * 2 1 3 5 5 O 1.21287 * 119.99602 * 32.69086 * 4 2 1 6 6 N 1.34775 * 120.00067 * 212.68717 * 4 2 1 7 7 C 1.47575 * 134.49156 * 174.87014 * 6 4 2 8 8 C 1.53941 * 86.11965 * 204.66096 * 7 6 4 9 9 O 1.42903 * 113.74213 * 90.73791 * 8 7 6 10 10 C 1.50695 * 113.74442 * 221.94432 * 8 7 6 11 11 H 1.07996 * 120.00359 * 358.07131 * 10 8 7 12 12 C 1.37885 * 119.99997 * 178.07259 * 10 8 7 13 13 N 1.31516 * 119.99537 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 120.00059 * 359.97438 * 12 10 8 15 15 H 1.48494 * 109.47080 * 89.99895 * 14 12 10 16 16 H 1.48503 * 109.46946 * 210.00152 * 14 12 10 17 17 H 1.48499 * 109.46992 * 329.99982 * 14 12 10 18 18 C 1.47921 * 134.50275 * 354.90417 * 6 4 2 19 19 C 1.50697 * 109.47104 * 240.00235 * 2 1 3 20 20 C 1.39380 * 119.50378 * 299.72462 * 19 2 1 21 21 C 1.36086 * 120.98825 * 179.73179 * 20 19 2 22 22 C 1.40536 * 119.65392 * 0.56216 * 21 20 19 23 23 C 1.40535 * 121.28613 * 179.72265 * 22 21 20 24 24 C 1.36095 * 119.65892 * 180.02562 * 23 22 21 25 25 C 1.39372 * 120.98421 * 359.95568 * 24 23 22 26 26 C 1.36092 * 120.99194 * 0.02672 * 25 24 23 27 27 C 1.40539 * 119.65388 * 359.97438 * 26 25 24 28 28 C 1.36087 * 119.50442 * 120.00445 * 19 2 1 29 29 H 1.08996 * 109.46933 * 304.51335 * 1 2 3 30 30 H 1.08999 * 109.47045 * 64.50877 * 1 2 3 31 31 H 1.08996 * 109.47520 * 184.50958 * 1 2 3 32 32 H 1.09000 * 113.77154 * 90.35811 * 7 6 4 33 33 H 1.09001 * 113.87578 * 318.97529 * 7 6 4 34 34 H 0.96707 * 113.99940 * 181.92965 * 9 8 7 35 35 H 0.97002 * 119.99615 * 179.97438 * 13 12 10 36 36 H 1.09000 * 113.86914 * 41.07265 * 18 6 4 37 37 H 1.08999 * 113.76631 * 269.58315 * 18 6 4 38 38 H 1.08009 * 119.50377 * 0.02562 * 20 19 2 39 39 H 1.08003 * 120.17642 * 180.27930 * 21 20 19 40 40 H 1.08002 * 120.17414 * 0.03025 * 23 22 21 41 41 H 1.08002 * 119.50939 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.50190 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.17276 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.17438 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4010 -1.6349 1.6971 6 7 3.1831 -0.3185 1.8123 7 6 3.9049 -0.7044 3.0403 8 6 4.5352 0.6990 2.9857 9 8 3.7971 1.6896 3.7042 10 6 6.0075 0.7159 3.3064 11 1 6.5121 -0.2003 3.5755 12 6 6.7105 1.9010 3.2562 13 7 7.9954 1.9156 3.5366 14 14 5.8380 3.4855 2.7900 15 1 5.3099 4.1385 4.0147 16 1 6.7961 4.3983 2.1161 17 1 4.7145 3.1792 1.8686 18 6 4.2297 0.6716 1.4771 19 6 2.0324 -0.7103 -1.2305 20 6 1.6941 -2.0465 -1.4379 21 6 2.1266 -2.7156 -2.5411 22 6 2.9363 -2.0559 -3.4815 23 6 3.4068 -2.7155 -4.6298 24 6 4.1894 -2.0448 -5.5186 25 6 4.5321 -0.7103 -5.3085 26 6 4.0946 -0.0394 -4.2082 27 6 3.2845 -0.6988 -3.2681 28 6 2.8142 -0.0393 -2.1195 29 1 -0.3633 0.5823 0.8468 30 1 -0.3633 0.4423 -0.9276 31 1 -0.3634 -1.0244 0.0808 32 1 4.6205 -1.5134 2.8935 33 1 3.2565 -0.8615 3.9023 34 1 4.1738 2.5785 3.6479 35 1 8.4900 2.7493 3.5010 36 1 3.8389 1.6129 1.0907 37 1 5.0405 0.2659 0.8720 38 1 1.0755 -2.5571 -0.7145 39 1 1.8529 -3.7496 -2.6910 40 1 3.1486 -3.7493 -4.8061 41 1 4.5500 -2.5542 -6.4000 42 1 5.1542 -0.2011 -6.0296 43 1 4.3686 0.9945 -4.0584 44 1 3.0716 0.9947 -1.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193141232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:06 Heat of formation + Delta-G solvation = 2.655426 kcal Electronic energy + Delta-G solvation = -27324.824192 eV Core-core repulsion = 23594.416436 eV Total energy + Delta-G solvation = -3730.407756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66665 -39.75394 -38.10274 -36.63930 -34.47009 -33.55510 -32.57259 -32.49792 -29.76006 -28.98564 -28.87161 -26.04481 -25.37860 -24.11517 -23.39683 -22.09318 -21.98651 -20.04328 -18.62340 -17.58791 -17.32212 -17.07762 -16.52251 -16.28641 -16.23809 -15.19047 -14.95154 -14.74895 -14.17798 -14.01135 -13.75795 -13.68750 -13.43641 -13.39975 -13.15951 -12.90859 -12.77921 -12.58334 -12.28350 -12.17817 -11.97902 -11.80684 -11.34084 -11.27742 -11.23743 -10.96597 -10.92136 -10.78961 -10.63769 -10.16146 -10.06042 -9.73011 -9.32855 -9.03653 -8.74193 -8.52545 -8.05190 -7.94385 -6.44377 -4.50608 0.46237 0.92395 1.98532 2.84190 2.96038 2.97362 3.06903 3.11321 3.38426 4.00259 4.04179 4.47042 4.60181 4.64902 4.73958 4.80424 4.85912 4.95853 5.08454 5.10286 5.12426 5.26037 5.32337 5.39502 5.44414 5.56197 5.68079 5.73673 5.85798 5.88201 6.00300 6.01214 6.04492 6.12922 6.18632 6.21886 6.24954 6.31502 6.35890 6.42187 6.51588 6.58894 6.60299 6.75289 6.93303 7.17693 8.00695 8.26477 8.48008 8.58962 8.60488 9.12885 10.67888 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.004020 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.839236 B = 6963.490004 C = 8229.889537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 H 0.094 0.906 4 C 0.540 3.460 5 O -0.556 6.556 6 N -0.631 5.631 7 C 0.127 3.873 8 C 0.195 3.805 9 O -0.553 6.553 10 C -0.537 4.537 11 H 0.091 0.909 12 C 0.081 3.919 13 N -0.876 5.876 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.256 1.256 18 C 0.065 3.935 19 C -0.064 4.064 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.051 4.051 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.049 4.049 28 C -0.098 4.098 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.352 0.648 35 H 0.271 0.729 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -2.952 -16.623 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.112 0.888 4 C 0.329 3.671 5 O -0.436 6.436 6 N -0.364 5.364 7 C 0.006 3.994 8 C 0.154 3.846 9 O -0.364 6.364 10 C -0.574 4.574 11 H 0.109 0.891 12 C -0.125 4.125 13 N -0.511 5.511 14 Si 0.685 3.315 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.181 1.181 18 C -0.058 4.058 19 C -0.064 4.064 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.052 4.052 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.120 4.120 27 C -0.049 4.049 28 C -0.116 4.116 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.204 0.796 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.049 -3.890 -16.302 19.542 hybrid contribution 0.245 1.475 -0.417 1.552 sum -9.805 -2.415 -16.719 19.532 Atomic orbital electron populations 1.21647 0.91706 1.03480 1.01896 1.20263 0.98030 0.99813 0.90946 0.88798 1.19915 0.80224 0.83074 0.83888 1.90626 1.57985 1.29764 1.65213 1.50208 1.19662 1.40538 1.26010 1.23266 0.92718 0.97484 0.85971 1.20554 0.91237 0.86233 0.86538 1.86468 1.55441 1.19479 1.75015 1.21235 0.90243 0.97293 1.48678 0.89102 1.25002 0.94855 0.98802 0.93801 1.69859 1.07241 1.27804 1.46220 0.87364 0.80043 0.84322 0.79755 1.19292 1.20919 1.18100 1.24690 0.87952 0.90783 1.02393 1.19195 0.97875 0.94347 0.94985 1.20864 0.99397 0.93869 0.97375 1.20979 0.97938 0.99699 0.94098 1.18118 0.98221 0.93313 0.95500 1.21014 0.98086 0.99657 0.93734 1.20828 0.98607 0.94840 0.99499 1.20826 1.00348 0.94835 0.97934 1.21054 0.97100 0.99919 0.93913 1.18036 0.98267 0.93306 0.95309 1.20941 0.97284 0.99935 0.93456 0.91964 0.91910 0.91101 0.88882 0.90610 0.79630 0.91890 0.91366 0.88727 0.85192 0.85522 0.85732 0.86164 0.86082 0.85519 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.66 37.16 0.32 -1.36 16 2 C -0.07 -1.03 2.72 -92.92 -0.25 -1.29 16 3 H 0.09 1.32 7.27 -51.93 -0.38 0.94 16 4 C 0.54 10.23 6.70 -10.99 -0.07 10.15 16 5 O -0.56 -11.81 16.38 5.55 0.09 -11.72 16 6 N -0.63 -12.56 3.62 -178.03 -0.64 -13.21 16 7 C 0.13 2.66 8.23 -2.97 -0.02 2.63 16 8 C 0.20 4.38 1.06 -90.85 -0.10 4.29 16 9 O -0.55 -12.75 13.35 -35.23 -0.47 -13.22 16 10 C -0.54 -13.73 9.19 -34.44 -0.32 -14.05 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.88 -24.28 13.96 55.43 0.77 -23.51 16 14 Si 0.86 18.42 24.31 -169.99 -4.13 14.29 16 15 H -0.27 -5.61 7.05 56.52 0.40 -5.21 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.26 -5.05 5.16 56.52 0.29 -4.76 16 18 C 0.06 1.28 6.94 -2.78 -0.02 1.26 16 19 C -0.06 -0.90 4.74 -104.97 -0.50 -1.40 16 20 C -0.10 -1.35 8.73 -39.93 -0.35 -1.70 16 21 C -0.11 -1.36 9.77 -39.49 -0.39 -1.74 16 22 C -0.05 -0.65 5.74 -106.84 -0.61 -1.26 16 23 C -0.11 -1.13 9.77 -39.49 -0.39 -1.51 16 24 C -0.12 -1.15 9.95 -39.93 -0.40 -1.55 16 25 C -0.12 -1.20 9.95 -39.93 -0.40 -1.60 16 26 C -0.10 -1.14 9.77 -39.49 -0.39 -1.52 16 27 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 28 C -0.10 -1.30 9.37 -39.48 -0.37 -1.67 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.96 7.07 -51.93 -0.37 0.59 16 32 H 0.09 1.85 8.09 -51.93 -0.42 1.43 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.35 7.69 3.57 45.56 0.16 7.86 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 37 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 38 H 0.13 1.85 7.12 -52.48 -0.37 1.48 16 39 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.13 1.49 7.89 -52.49 -0.41 1.08 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -30.33 360.13 -9.51 -39.84 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.60 Total: 13.67 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -4.95 Total: -11.57 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.13 Total: -36.72 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.38 Total: -24.94 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.13 Total: 14.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.33 -9.51 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193141232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.492 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds