Wall clock time and date at job start Tue Mar 31 2020 16:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46839 * 2 1 4 4 C 1.50701 * 109.46963 * 119.99939 * 2 1 3 5 5 O 1.21287 * 119.99602 * 32.69086 * 4 2 1 6 6 N 1.34775 * 120.00067 * 212.68717 * 4 2 1 7 7 C 1.47575 * 134.49156 * 174.87014 * 6 4 2 8 8 C 1.53941 * 86.11965 * 204.66096 * 7 6 4 9 9 O 1.42903 * 113.74213 * 90.73791 * 8 7 6 10 10 C 1.50695 * 113.74442 * 221.94432 * 8 7 6 11 11 H 1.07996 * 120.00359 * 358.07131 * 10 8 7 12 12 C 1.37885 * 119.99997 * 178.07259 * 10 8 7 13 13 N 1.31516 * 119.99537 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 120.00059 * 359.97438 * 12 10 8 15 15 H 1.48494 * 109.47080 * 89.99895 * 14 12 10 16 16 H 1.48503 * 109.46946 * 210.00152 * 14 12 10 17 17 H 1.48499 * 109.46992 * 329.99982 * 14 12 10 18 18 C 1.47921 * 134.50275 * 354.90417 * 6 4 2 19 19 C 1.50697 * 109.47104 * 240.00235 * 2 1 3 20 20 C 1.39380 * 119.50378 * 299.72462 * 19 2 1 21 21 C 1.36086 * 120.98825 * 179.73179 * 20 19 2 22 22 C 1.40536 * 119.65392 * 0.56216 * 21 20 19 23 23 C 1.40535 * 121.28613 * 179.72265 * 22 21 20 24 24 C 1.36095 * 119.65892 * 180.02562 * 23 22 21 25 25 C 1.39372 * 120.98421 * 359.95568 * 24 23 22 26 26 C 1.36092 * 120.99194 * 0.02672 * 25 24 23 27 27 C 1.40539 * 119.65388 * 359.97438 * 26 25 24 28 28 C 1.36087 * 119.50442 * 120.00445 * 19 2 1 29 29 H 1.08996 * 109.46933 * 304.51335 * 1 2 3 30 30 H 1.08999 * 109.47045 * 64.50877 * 1 2 3 31 31 H 1.08996 * 109.47520 * 184.50958 * 1 2 3 32 32 H 1.09000 * 113.77154 * 90.35811 * 7 6 4 33 33 H 1.09001 * 113.87578 * 318.97529 * 7 6 4 34 34 H 0.96707 * 113.99940 * 181.92965 * 9 8 7 35 35 H 0.97002 * 119.99615 * 179.97438 * 13 12 10 36 36 H 1.09000 * 113.86914 * 41.07265 * 18 6 4 37 37 H 1.08999 * 113.76631 * 269.58315 * 18 6 4 38 38 H 1.08009 * 119.50377 * 0.02562 * 20 19 2 39 39 H 1.08003 * 120.17642 * 180.27930 * 21 20 19 40 40 H 1.08002 * 120.17414 * 0.03025 * 23 22 21 41 41 H 1.08002 * 119.50939 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.50190 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.17276 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.17438 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4010 -1.6349 1.6971 6 7 3.1831 -0.3185 1.8123 7 6 3.9049 -0.7044 3.0403 8 6 4.5352 0.6990 2.9857 9 8 3.7971 1.6896 3.7042 10 6 6.0075 0.7159 3.3064 11 1 6.5121 -0.2003 3.5755 12 6 6.7105 1.9010 3.2562 13 7 7.9954 1.9156 3.5366 14 14 5.8380 3.4855 2.7900 15 1 5.3099 4.1385 4.0147 16 1 6.7961 4.3983 2.1161 17 1 4.7145 3.1792 1.8686 18 6 4.2297 0.6716 1.4771 19 6 2.0324 -0.7103 -1.2305 20 6 1.6941 -2.0465 -1.4379 21 6 2.1266 -2.7156 -2.5411 22 6 2.9363 -2.0559 -3.4815 23 6 3.4068 -2.7155 -4.6298 24 6 4.1894 -2.0448 -5.5186 25 6 4.5321 -0.7103 -5.3085 26 6 4.0946 -0.0394 -4.2082 27 6 3.2845 -0.6988 -3.2681 28 6 2.8142 -0.0393 -2.1195 29 1 -0.3633 0.5823 0.8468 30 1 -0.3633 0.4423 -0.9276 31 1 -0.3634 -1.0244 0.0808 32 1 4.6205 -1.5134 2.8935 33 1 3.2565 -0.8615 3.9023 34 1 4.1738 2.5785 3.6479 35 1 8.4900 2.7493 3.5010 36 1 3.8389 1.6129 1.0907 37 1 5.0405 0.2659 0.8720 38 1 1.0755 -2.5571 -0.7145 39 1 1.8529 -3.7496 -2.6910 40 1 3.1486 -3.7493 -4.8061 41 1 4.5500 -2.5542 -6.4000 42 1 5.1542 -0.2011 -6.0296 43 1 4.3686 0.9945 -4.0584 44 1 3.0716 0.9947 -1.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193141232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:05 Heat of formation + Delta-G solvation = -15.740276 kcal Electronic energy + Delta-G solvation = -27325.621890 eV Core-core repulsion = 23594.416436 eV Total energy + Delta-G solvation = -3731.205453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.79167 -41.09374 -39.57462 -37.70096 -36.21916 -34.59303 -34.54686 -33.39549 -30.81030 -30.47160 -29.79516 -27.74222 -27.09224 -25.24213 -24.28464 -23.22881 -22.86503 -21.66041 -20.10403 -19.37774 -18.46969 -18.21114 -18.09344 -17.58255 -17.30672 -16.65738 -16.23963 -15.65774 -15.58342 -15.37909 -15.18327 -14.83670 -14.75917 -14.56274 -14.32015 -14.26464 -14.17326 -13.83762 -13.81180 -13.23462 -13.10694 -12.99675 -12.87114 -12.61610 -12.45653 -12.22776 -12.19102 -11.94089 -11.85246 -11.68954 -11.39680 -11.09990 -10.94629 -10.81265 -10.45196 -9.68809 -9.47534 -8.81763 -8.42425 -6.55804 -0.40276 0.02239 1.10592 1.25726 1.29107 1.41507 1.55044 1.82766 2.06905 2.18828 2.77142 3.12946 3.21461 3.49738 3.56644 3.70950 3.82676 3.91591 4.00100 4.05873 4.15276 4.28259 4.32987 4.35197 4.40143 4.43563 4.47634 4.58057 4.62444 4.64723 4.73986 4.81655 4.86475 4.91724 4.92016 5.00190 5.12918 5.21828 5.27979 5.30709 5.33459 5.54173 5.63117 5.65997 5.89290 6.04010 6.09577 6.51733 6.66262 6.76153 7.07006 7.13163 8.73144 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.004020 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.839236 B = 6963.490004 C = 8229.889537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 H 0.108 0.892 4 C 0.536 3.464 5 O -0.584 6.584 6 N -0.634 5.634 7 C 0.122 3.878 8 C 0.189 3.811 9 O -0.559 6.559 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.028 3.972 13 N -0.925 5.925 14 Si 0.917 3.083 15 H -0.257 1.257 16 H -0.281 1.281 17 H -0.224 1.224 18 C 0.080 3.920 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.070 4.070 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.068 4.068 28 C -0.100 4.100 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.357 0.643 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 -1.585 -19.600 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 H 0.126 0.874 4 C 0.327 3.673 5 O -0.466 6.466 6 N -0.367 5.367 7 C 0.000 4.000 8 C 0.148 3.852 9 O -0.370 6.370 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.173 4.173 13 N -0.562 5.562 14 Si 0.741 3.259 15 H -0.182 1.182 16 H -0.207 1.207 17 H -0.147 1.147 18 C -0.043 4.043 19 C -0.080 4.080 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.070 4.070 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.068 4.068 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.210 0.790 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.990 -2.535 -19.289 22.344 hybrid contribution 0.622 0.904 0.465 1.192 sum -10.368 -1.631 -18.824 21.552 Atomic orbital electron populations 1.21646 0.90440 1.03027 1.03190 1.20274 0.99032 0.99832 0.89028 0.87415 1.20729 0.79272 0.82769 0.84565 1.90607 1.58571 1.31134 1.66259 1.50224 1.20123 1.40709 1.25614 1.23214 0.92965 0.97011 0.86846 1.20528 0.89295 0.86931 0.88464 1.86461 1.55211 1.19869 1.75494 1.21344 0.92094 0.96229 1.48844 0.92981 1.25854 0.95375 1.02637 0.93410 1.70008 1.09228 1.29047 1.47905 0.86360 0.79818 0.79238 0.80485 1.18225 1.20706 1.14734 1.24480 0.88062 0.91772 0.99981 1.19146 0.99152 0.94562 0.95110 1.20842 1.00461 0.94263 0.98004 1.21217 0.97328 1.00539 0.93513 1.18410 0.98591 0.93663 0.96352 1.21312 0.98186 1.00786 0.93209 1.21240 0.97492 0.94893 0.99996 1.21232 0.99688 0.95076 0.97798 1.21312 0.97176 1.00883 0.94079 1.18311 0.98953 0.93767 0.95808 1.21136 0.96636 1.00636 0.93364 0.91970 0.89412 0.92272 0.88770 0.91084 0.79032 0.91697 0.89033 0.88481 0.86521 0.83659 0.83705 0.83335 0.83491 0.83990 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.66 71.98 0.62 -2.46 16 2 C -0.06 -1.72 2.72 -12.29 -0.03 -1.75 16 3 H 0.11 2.72 7.27 -2.39 -0.02 2.70 16 4 C 0.54 19.98 6.70 87.66 0.59 20.56 16 5 O -0.58 -25.04 16.38 -3.05 -0.05 -25.09 16 6 N -0.63 -24.75 3.62 -839.38 -3.03 -27.78 16 7 C 0.12 5.16 8.23 86.49 0.71 5.88 16 8 C 0.19 8.37 1.06 -10.88 -0.01 8.36 16 9 O -0.56 -24.84 13.35 -148.98 -1.99 -26.83 16 10 C -0.55 -28.60 9.19 25.60 0.24 -28.37 16 11 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 12 C 0.03 1.48 5.47 84.66 0.46 1.94 16 13 N -0.92 -52.45 13.96 21.45 0.30 -52.15 16 14 Si 0.92 36.72 24.31 68.60 1.67 38.38 16 15 H -0.26 -9.87 7.05 99.48 0.70 -9.17 16 16 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.22 -7.73 5.16 99.48 0.51 -7.22 16 18 C 0.08 3.00 6.94 86.42 0.60 3.60 16 19 C -0.08 -2.16 4.74 -20.09 -0.10 -2.25 16 20 C -0.12 -3.25 8.73 22.04 0.19 -3.05 16 21 C -0.11 -2.60 9.77 22.33 0.22 -2.38 16 22 C -0.07 -1.66 5.74 -21.30 -0.12 -1.79 16 23 C -0.12 -2.18 9.77 22.33 0.22 -1.96 16 24 C -0.12 -1.88 9.95 22.04 0.22 -1.66 16 25 C -0.12 -1.98 9.95 22.04 0.22 -1.76 16 26 C -0.12 -2.30 9.77 22.33 0.22 -2.08 16 27 C -0.07 -1.65 5.74 -21.29 -0.12 -1.77 16 28 C -0.10 -2.46 9.37 22.33 0.21 -2.26 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.58 7.07 -2.39 -0.02 1.57 16 32 H 0.09 3.88 8.09 -2.39 -0.02 3.87 16 33 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.36 14.67 3.57 -74.05 -0.26 14.41 16 35 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.09 3.03 6.53 -2.39 -0.02 3.01 16 37 H 0.10 3.62 8.09 -2.39 -0.02 3.61 16 38 H 0.12 3.43 7.12 -2.91 -0.02 3.41 16 39 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.14 2.94 7.89 -2.91 -0.02 2.92 16 Total: -1.00 -67.07 360.13 1.78 -65.29 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: 0.55 Total: 41.38 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.33 Total: -13.20 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.74 Total: -79.94 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -2.04 Total: -51.92 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 1.67 Total: 38.38 kcal Total: -67.07 1.78 -65.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193141232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds