Wall clock time and date at job start Tue Mar 31 2020 16:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99824 * 2 1 4 4 C 1.38752 * 120.05726 * 0.20562 * 3 2 1 5 5 C 1.38136 * 119.94351 * 180.27831 * 4 3 2 6 6 C 1.38284 * 120.05515 * 359.76833 * 5 4 3 7 7 C 1.38249 * 120.11099 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.96919 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47135 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47448 * 300.01950 * 8 7 6 11 11 C 1.50701 * 109.47609 * 60.02413 * 8 7 6 12 12 O 1.21285 * 119.99923 * 268.70645 * 11 8 7 13 13 N 1.34773 * 119.99975 * 88.69297 * 11 8 7 14 14 C 1.37142 * 119.99644 * 173.28945 * 13 11 8 15 15 H 1.08008 * 119.99793 * 129.04494 * 14 13 11 16 16 C 1.38883 * 120.00384 * 309.04387 * 14 13 11 17 17 N 1.31426 * 120.00141 * 348.33412 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 168.33631 * 16 14 13 19 19 H 1.48499 * 109.46858 * 60.00185 * 18 16 14 20 20 H 1.48502 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47135 * 300.00025 * 18 16 14 22 22 C 1.39785 * 120.00373 * 353.29673 * 13 11 8 23 23 C 1.38960 * 120.07755 * 113.31032 * 22 13 11 24 24 C 1.38086 * 119.91721 * 179.74283 * 23 22 13 25 25 C 1.38305 * 120.08149 * 0.53404 * 24 23 22 26 26 C 1.38312 * 120.15297 * 359.72049 * 25 24 23 27 27 C 1.38080 * 120.07939 * 0.02570 * 26 25 24 28 28 C 1.38160 * 120.05700 * 0.02562 * 7 6 5 29 29 H 1.09000 * 109.46992 * 300.00061 * 1 2 3 30 30 H 1.08999 * 109.46780 * 60.00030 * 1 2 3 31 31 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.03211 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.97014 * 179.74757 * 5 4 3 34 34 H 1.07995 * 119.94578 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46553 * 72.74432 * 10 8 7 36 36 H 1.09003 * 109.47376 * 192.74079 * 10 8 7 37 37 H 1.09000 * 109.47306 * 312.74319 * 10 8 7 38 38 H 0.96998 * 120.00220 * 185.01275 * 17 16 14 39 39 H 1.08002 * 120.04093 * 0.02562 * 23 22 13 40 40 H 1.08002 * 119.95821 * 180.25252 * 24 23 22 41 41 H 1.07996 * 119.92827 * 179.69358 * 25 24 23 42 42 H 1.08005 * 119.96073 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03710 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.02851 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0043 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6759 -0.0068 7 6 4.0560 2.5171 -0.0057 8 6 5.5607 2.5982 -0.0121 9 1 5.9788 1.5916 -0.0106 10 6 6.0262 3.3419 -1.2656 11 6 6.0292 3.3385 1.2142 12 8 6.1891 4.5400 1.1730 13 7 6.2701 2.6653 2.3566 14 6 6.8262 3.3132 3.4299 15 1 6.3651 3.2387 4.4038 16 6 7.9822 4.0649 3.2646 17 7 8.6706 3.9751 2.1486 18 14 8.5589 5.2038 4.6284 19 1 8.8185 4.4121 5.8576 20 1 9.8075 5.8883 4.2069 21 1 7.5087 6.2167 4.9045 22 6 5.9534 1.3069 2.4476 23 6 6.9652 0.3629 2.5750 24 6 6.6483 -0.9777 2.6699 25 6 5.3265 -1.3823 2.6273 26 6 4.3172 -0.4459 2.4954 27 6 4.6264 0.8968 2.4051 28 6 3.4311 1.2849 0.0001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2128 2.3204 0.0081 33 1 1.3340 4.5114 -0.0023 34 1 3.7922 4.6381 -0.0118 35 1 5.8028 4.4037 -1.1619 36 1 7.1006 3.2071 -1.3901 37 1 5.5067 2.9447 -2.1376 38 1 9.5155 4.4434 2.0608 39 1 7.9979 0.6778 2.6042 40 1 7.4340 -1.7116 2.7730 41 1 5.0817 -2.4319 2.6969 42 1 3.2860 -0.7653 2.4620 43 1 3.8378 1.6274 2.3017 44 1 4.0207 0.3799 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195115135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:05 Heat of formation + Delta-G solvation = -6.269145 kcal Electronic energy + Delta-G solvation = -28564.752829 eV Core-core repulsion = 24833.958075 eV Total energy + Delta-G solvation = -3730.794754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.30224 -39.27942 -37.80359 -37.05241 -34.35118 -33.19580 -31.79756 -30.75877 -29.97681 -28.72238 -28.52930 -27.23484 -25.48432 -23.50721 -22.38417 -21.93876 -21.74785 -20.84412 -19.03945 -17.54435 -17.30971 -16.53371 -15.99585 -15.70844 -15.57112 -15.27577 -15.04738 -14.62906 -14.20253 -13.91274 -13.83723 -13.44968 -13.31186 -12.92579 -12.76544 -12.49999 -12.40733 -12.13673 -11.89450 -11.74001 -11.60646 -11.30591 -11.13151 -11.02319 -10.92112 -10.81379 -10.74905 -10.62904 -10.39361 -10.32339 -10.21825 -8.86143 -8.74354 -8.44782 -8.20302 -7.99466 -7.89950 -7.07420 -6.24316 -4.05048 1.54929 1.70752 2.04529 2.09494 3.25992 3.32046 3.33949 3.35504 3.97735 4.06163 4.29751 4.49038 4.83290 4.92063 5.04097 5.08465 5.14449 5.21202 5.35576 5.41404 5.52961 5.54601 5.63490 5.66174 5.69909 5.75147 5.82161 5.94578 6.05418 6.14095 6.25495 6.27588 6.32545 6.48734 6.53856 6.62266 6.69463 6.72874 6.81661 6.98035 7.04613 7.06950 7.15476 7.39982 7.53205 7.56517 7.64386 8.28671 8.95532 9.05525 9.50937 10.12786 10.86086 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.005242 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.496403 B = 5340.232109 C = 6456.077112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.022 4.022 8 C -0.073 4.073 9 H 0.085 0.915 10 C -0.125 4.125 11 C 0.516 3.484 12 O -0.524 6.524 13 N -0.420 5.420 14 C -0.341 4.341 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.847 5.847 18 Si 0.919 3.081 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.165 3.835 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.151 4.151 26 C -0.110 4.110 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.268 0.732 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 -8.388 -4.938 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.104 4.104 6 C -0.157 4.157 7 C -0.023 4.023 8 C -0.095 4.095 9 H 0.104 0.896 10 C -0.183 4.183 11 C 0.304 3.696 12 O -0.401 6.401 13 N -0.138 5.138 14 C -0.467 4.467 15 H 0.095 0.905 16 C -0.138 4.138 17 N -0.479 5.479 18 Si 0.745 3.255 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.072 3.928 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.169 4.169 26 C -0.129 4.129 27 C -0.157 4.157 28 C -0.151 4.151 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.680 -7.739 -5.092 14.908 hybrid contribution 0.180 0.532 0.752 0.938 sum -11.500 -7.208 -4.340 14.249 Atomic orbital electron populations 1.22979 0.79076 1.03433 1.01103 1.86063 1.20755 1.27145 1.89129 1.18863 0.92060 0.83880 0.97907 1.21122 0.99463 0.92534 1.10274 1.20857 0.94481 0.96751 0.98268 1.21091 0.93456 0.98932 1.02182 1.19421 0.94538 0.92200 0.96116 1.20329 0.91137 1.01411 0.96654 0.89641 1.21591 1.01088 1.01221 0.94365 1.19775 0.78703 0.87284 0.83862 1.90489 1.51839 1.14464 1.83267 1.40932 1.56700 1.03336 1.12791 1.18974 1.08660 1.30106 0.88934 0.90454 1.25399 0.95104 0.96800 0.96488 1.69768 1.12826 1.39962 1.25386 0.86162 0.78003 0.80691 0.80594 1.20071 1.20982 1.19691 1.18268 0.91769 0.86355 0.96408 1.21427 0.99971 0.92021 1.00539 1.20944 0.96066 0.95478 1.01119 1.20902 0.93057 0.98637 1.04337 1.20832 0.98576 0.92713 1.00763 1.21389 0.95698 0.96060 1.02567 1.20358 0.91161 0.98223 1.05397 0.92884 0.92999 0.88633 0.86070 0.86124 0.85245 0.91190 0.92114 0.93069 0.92193 0.85706 0.86942 0.87196 0.86911 0.86600 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.19 10.50 -19.41 -0.20 -4.40 16 3 C 0.12 1.73 6.69 -39.21 -0.26 1.47 16 4 C -0.22 -2.91 9.04 -39.43 -0.36 -3.26 16 5 C -0.09 -1.24 10.04 -39.60 -0.40 -1.64 16 6 C -0.14 -2.40 8.92 -39.56 -0.35 -2.75 16 7 C -0.02 -0.40 3.40 -104.65 -0.36 -0.75 16 8 C -0.07 -1.48 2.13 -92.93 -0.20 -1.68 16 9 H 0.09 1.72 6.92 -51.93 -0.36 1.36 16 10 C -0.13 -2.32 8.73 37.16 0.32 -2.00 16 11 C 0.52 12.90 5.35 -10.99 -0.06 12.84 16 12 O -0.52 -14.88 14.26 5.55 0.08 -14.80 16 13 N -0.42 -10.67 2.52 -58.98 -0.15 -10.82 16 14 C -0.34 -9.42 8.87 -14.94 -0.13 -9.56 16 15 H 0.08 2.12 7.86 -52.48 -0.41 1.71 16 16 C 0.07 1.99 4.65 -17.49 -0.08 1.91 16 17 N -0.85 -24.23 12.13 55.49 0.67 -23.56 16 18 Si 0.92 21.62 29.57 -169.99 -5.03 16.60 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.16 3.61 3.92 -83.70 -0.33 3.28 16 23 C -0.12 -2.44 9.80 -39.37 -0.39 -2.83 16 24 C -0.12 -1.96 10.04 -39.61 -0.40 -2.36 16 25 C -0.15 -2.32 10.04 -39.53 -0.40 -2.72 16 26 C -0.11 -1.80 9.18 -39.61 -0.36 -2.16 16 27 C -0.14 -2.62 6.26 -39.37 -0.25 -2.87 16 28 C -0.13 -2.17 6.34 -39.43 -0.25 -2.42 16 29 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 2.40 7.61 -52.49 -0.40 2.00 16 35 H 0.07 1.37 7.10 -51.93 -0.37 1.00 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.27 7.34 8.32 -40.82 -0.34 7.00 16 39 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 43 H 0.12 2.31 6.29 -52.49 -0.33 1.98 16 44 H 0.13 2.15 6.87 -52.48 -0.36 1.79 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -31.73 360.74 -8.31 -40.04 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.87 Total: 7.74 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.25 Total: -16.24 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.52 Total: -34.38 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.12 Total: -19.19 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.73 -8.31 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195115135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.771 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds