Wall clock time and date at job start Tue Mar 31 2020 16:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99824 * 2 1 4 4 C 1.38752 * 120.05726 * 0.20562 * 3 2 1 5 5 C 1.38136 * 119.94351 * 180.27831 * 4 3 2 6 6 C 1.38284 * 120.05515 * 359.76833 * 5 4 3 7 7 C 1.38249 * 120.11099 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.96919 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47135 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47448 * 300.01950 * 8 7 6 11 11 C 1.50701 * 109.47609 * 60.02413 * 8 7 6 12 12 O 1.21285 * 119.99923 * 268.70645 * 11 8 7 13 13 N 1.34773 * 119.99975 * 88.69297 * 11 8 7 14 14 C 1.37142 * 119.99644 * 173.28945 * 13 11 8 15 15 H 1.08008 * 119.99793 * 129.04494 * 14 13 11 16 16 C 1.38883 * 120.00384 * 309.04387 * 14 13 11 17 17 N 1.31426 * 120.00141 * 348.33412 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 168.33631 * 16 14 13 19 19 H 1.48499 * 109.46858 * 60.00185 * 18 16 14 20 20 H 1.48502 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47135 * 300.00025 * 18 16 14 22 22 C 1.39785 * 120.00373 * 353.29673 * 13 11 8 23 23 C 1.38960 * 120.07755 * 113.31032 * 22 13 11 24 24 C 1.38086 * 119.91721 * 179.74283 * 23 22 13 25 25 C 1.38305 * 120.08149 * 0.53404 * 24 23 22 26 26 C 1.38312 * 120.15297 * 359.72049 * 25 24 23 27 27 C 1.38080 * 120.07939 * 0.02570 * 26 25 24 28 28 C 1.38160 * 120.05700 * 0.02562 * 7 6 5 29 29 H 1.09000 * 109.46992 * 300.00061 * 1 2 3 30 30 H 1.08999 * 109.46780 * 60.00030 * 1 2 3 31 31 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.03211 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.97014 * 179.74757 * 5 4 3 34 34 H 1.07995 * 119.94578 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46553 * 72.74432 * 10 8 7 36 36 H 1.09003 * 109.47376 * 192.74079 * 10 8 7 37 37 H 1.09000 * 109.47306 * 312.74319 * 10 8 7 38 38 H 0.96998 * 120.00220 * 185.01275 * 17 16 14 39 39 H 1.08002 * 120.04093 * 0.02562 * 23 22 13 40 40 H 1.08002 * 119.95821 * 180.25252 * 24 23 22 41 41 H 1.07996 * 119.92827 * 179.69358 * 25 24 23 42 42 H 1.08005 * 119.96073 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03710 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.02851 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0043 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6759 -0.0068 7 6 4.0560 2.5171 -0.0057 8 6 5.5607 2.5982 -0.0121 9 1 5.9788 1.5916 -0.0106 10 6 6.0262 3.3419 -1.2656 11 6 6.0292 3.3385 1.2142 12 8 6.1891 4.5400 1.1730 13 7 6.2701 2.6653 2.3566 14 6 6.8262 3.3132 3.4299 15 1 6.3651 3.2387 4.4038 16 6 7.9822 4.0649 3.2646 17 7 8.6706 3.9751 2.1486 18 14 8.5589 5.2038 4.6284 19 1 8.8185 4.4121 5.8576 20 1 9.8075 5.8883 4.2069 21 1 7.5087 6.2167 4.9045 22 6 5.9534 1.3069 2.4476 23 6 6.9652 0.3629 2.5750 24 6 6.6483 -0.9777 2.6699 25 6 5.3265 -1.3823 2.6273 26 6 4.3172 -0.4459 2.4954 27 6 4.6264 0.8968 2.4051 28 6 3.4311 1.2849 0.0001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2128 2.3204 0.0081 33 1 1.3340 4.5114 -0.0023 34 1 3.7922 4.6381 -0.0118 35 1 5.8028 4.4037 -1.1619 36 1 7.1006 3.2071 -1.3901 37 1 5.5067 2.9447 -2.1376 38 1 9.5155 4.4434 2.0608 39 1 7.9979 0.6778 2.6042 40 1 7.4340 -1.7116 2.7730 41 1 5.0817 -2.4319 2.6969 42 1 3.2860 -0.7653 2.4620 43 1 3.8378 1.6274 2.3017 44 1 4.0207 0.3799 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195115135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:03 Heat of formation + Delta-G solvation = -23.647752 kcal Electronic energy + Delta-G solvation = -28565.506422 eV Core-core repulsion = 24833.958075 eV Total energy + Delta-G solvation = -3731.548347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.71240 -40.63574 -39.29518 -38.38433 -36.16247 -34.75868 -33.73169 -32.05976 -31.27974 -30.15348 -29.99877 -28.04735 -27.39700 -25.14658 -23.65175 -23.34678 -23.19615 -22.27638 -20.65297 -19.14404 -18.80868 -18.05632 -17.16881 -17.05115 -16.94242 -16.54748 -16.50238 -16.16340 -15.96161 -15.46532 -15.40065 -14.70289 -14.46734 -14.45694 -14.26111 -14.09584 -13.80773 -13.45634 -13.23193 -13.19810 -12.98894 -12.92200 -12.84405 -12.76808 -12.40733 -12.25552 -12.21336 -12.03040 -11.94603 -11.80502 -11.59634 -10.88196 -10.43401 -9.91201 -9.80378 -9.50959 -9.07677 -8.88454 -8.32587 -6.18462 0.32339 0.47304 0.61038 0.68104 1.32867 1.41131 1.45593 2.14374 2.32154 2.48558 2.78000 2.98688 3.10411 3.20548 3.79886 3.87253 4.01049 4.12250 4.18063 4.23434 4.26852 4.34739 4.41488 4.44237 4.45337 4.49879 4.60988 4.70164 4.73108 4.82772 4.84125 4.87102 4.92952 5.06770 5.14088 5.22205 5.28192 5.33856 5.40076 5.52302 5.66271 5.72766 5.74629 5.80841 5.87535 6.12651 6.29024 6.53815 6.94572 7.09161 7.56026 8.20306 8.78277 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.005242 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.496403 B = 5340.232109 C = 6456.077112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.125 3.875 4 C -0.205 4.205 5 C -0.081 4.081 6 C -0.162 4.162 7 C -0.035 4.035 8 C -0.061 4.061 9 H 0.081 0.919 10 C -0.118 4.118 11 C 0.506 3.494 12 O -0.576 6.576 13 N -0.433 5.433 14 C -0.361 4.361 15 H 0.069 0.931 16 C 0.026 3.974 17 N -0.880 5.880 18 Si 0.978 3.022 19 H -0.256 1.256 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.130 3.870 23 C -0.140 4.140 24 C -0.109 4.109 25 C -0.129 4.129 26 C -0.100 4.100 27 C -0.134 4.134 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.266 0.734 39 H 0.093 0.907 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 -11.555 -4.745 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.080 3.920 4 C -0.223 4.223 5 C -0.099 4.099 6 C -0.181 4.181 7 C -0.036 4.036 8 C -0.083 4.083 9 H 0.100 0.900 10 C -0.176 4.176 11 C 0.296 3.704 12 O -0.456 6.456 13 N -0.150 5.150 14 C -0.487 4.487 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.515 5.515 18 Si 0.802 3.198 19 H -0.181 1.181 20 H -0.204 1.204 21 H -0.203 1.203 22 C 0.038 3.962 23 C -0.160 4.160 24 C -0.127 4.127 25 C -0.147 4.147 26 C -0.118 4.118 27 C -0.153 4.153 28 C -0.157 4.157 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.861 -10.972 -4.883 19.107 hybrid contribution 0.958 1.315 0.688 1.767 sum -13.903 -9.656 -4.195 17.439 Atomic orbital electron populations 1.23355 0.76531 1.05580 1.02224 1.86055 1.23298 1.26077 1.88653 1.18863 0.91525 0.85051 0.96591 1.21479 1.01227 0.91387 1.08211 1.21119 0.93219 0.98576 0.96943 1.21016 0.95023 0.97681 1.04373 1.19177 0.92766 0.93364 0.98304 1.20158 0.93320 1.00212 0.94620 0.90033 1.21540 1.00560 1.00245 0.95228 1.20521 0.77742 0.87088 0.84999 1.90429 1.54246 1.16599 1.84346 1.41065 1.56407 1.05086 1.12456 1.19147 1.08845 1.31297 0.89444 0.91375 1.26196 0.95211 0.97907 0.98715 1.69883 1.13152 1.41159 1.27264 0.85261 0.77277 0.78676 0.78625 1.18072 1.20441 1.20344 1.18452 0.93411 0.84893 0.99434 1.21328 0.98214 0.93911 1.02587 1.21250 0.98005 0.93998 0.99440 1.21391 0.91736 1.00675 1.00908 1.21152 1.00460 0.91249 0.98988 1.21286 0.93914 0.97396 1.02748 1.20240 0.92264 0.97121 1.06031 0.91878 0.91650 0.86195 0.82431 0.83599 0.87886 0.92919 0.93455 0.89752 0.92512 0.88828 0.83842 0.82606 0.83935 0.87832 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.28 10.50 -92.38 -0.97 -8.25 16 3 C 0.13 3.31 6.69 22.51 0.15 3.46 16 4 C -0.20 -4.84 9.04 22.37 0.20 -4.64 16 5 C -0.08 -2.22 10.04 22.26 0.22 -1.99 16 6 C -0.16 -5.79 8.92 22.28 0.20 -5.59 16 7 C -0.04 -1.30 3.40 -19.88 -0.07 -1.37 16 8 C -0.06 -2.62 2.13 -12.29 -0.03 -2.65 16 9 H 0.08 3.46 6.92 -2.39 -0.02 3.45 16 10 C -0.12 -4.67 8.73 71.98 0.63 -4.05 16 11 C 0.51 27.17 5.35 87.66 0.47 27.64 16 12 O -0.58 -35.35 14.26 -3.05 -0.04 -35.39 16 13 N -0.43 -23.39 2.52 -458.89 -1.16 -24.55 16 14 C -0.36 -21.18 8.87 84.02 0.75 -20.43 16 15 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16 16 C 0.03 1.49 4.65 84.91 0.39 1.88 16 17 N -0.88 -53.62 12.13 21.65 0.26 -53.36 16 18 Si 0.98 46.33 29.57 68.60 2.03 48.36 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 C 0.13 5.87 3.92 38.22 0.15 6.02 16 23 C -0.14 -5.87 9.80 22.41 0.22 -5.65 16 24 C -0.11 -3.37 10.04 22.25 0.22 -3.14 16 25 C -0.13 -3.40 10.04 22.30 0.22 -3.17 16 26 C -0.10 -2.92 9.18 22.25 0.20 -2.72 16 27 C -0.13 -5.06 6.26 22.41 0.14 -4.92 16 28 C -0.14 -4.34 6.34 22.37 0.14 -4.20 16 29 H 0.06 0.70 7.65 -2.39 -0.02 0.69 16 30 H 0.06 0.68 7.67 -2.39 -0.02 0.67 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.16 2.56 6.30 -2.91 -0.02 2.54 16 33 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.10 4.16 7.61 -2.91 -0.02 4.13 16 35 H 0.05 2.24 7.10 -2.38 -0.02 2.22 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 38 H 0.27 15.45 8.32 -92.71 -0.77 14.68 16 39 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.10 4.16 6.29 -2.91 -0.02 4.15 16 44 H 0.13 4.03 6.87 -2.91 -0.02 4.01 16 Total: -1.00 -75.85 360.74 6.46 -69.39 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 1.00 Total: 27.98 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.33 Total: -24.18 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -0.89 Total: -77.91 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.01 Total: -43.64 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.85 6.46 -69.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195115135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.745 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds