Wall clock time and date at job start Tue Mar 31 2020 14:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46768 * 2 1 4 4 H 1.09000 * 109.47541 * 54.99826 * 3 2 1 5 5 C 1.53001 * 109.46938 * 294.99376 * 3 2 1 6 6 C 1.50708 * 109.47163 * 174.99756 * 3 2 1 7 7 C 1.38226 * 119.99964 * 239.99896 * 6 3 2 8 8 C 1.38233 * 119.99972 * 179.97438 * 7 6 3 9 9 C 1.38240 * 120.00003 * 0.02562 * 8 7 6 10 10 S 1.76201 * 120.00145 * 179.97438 * 9 8 7 11 11 O 1.42101 * 106.39915 * 336.46116 * 10 9 8 12 12 O 1.42093 * 106.40141 * 203.54424 * 10 9 8 13 13 N 1.65593 * 107.21631 * 90.00160 * 10 9 8 14 14 C 1.46498 * 120.00388 * 269.99756 * 13 10 9 15 15 C 1.46505 * 119.99939 * 90.00236 * 13 10 9 16 16 H 1.09002 * 109.47068 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47212 * 239.99810 * 15 13 10 18 18 C 1.50699 * 109.47262 * 119.99723 * 15 13 10 19 19 H 1.08000 * 119.99792 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99902 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00126 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47319 * 60.00570 * 22 20 18 24 24 H 1.48503 * 109.46734 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47266 * 300.00384 * 22 20 18 26 26 C 1.38237 * 119.99667 * 0.25773 * 9 8 7 27 27 C 1.38233 * 119.99434 * 60.02179 * 6 3 2 28 28 H 1.09004 * 109.47279 * 60.00744 * 1 2 3 29 29 H 1.09001 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47580 * 300.00310 * 1 2 3 31 31 H 1.08996 * 109.47156 * 239.99775 * 2 1 3 32 32 H 1.09004 * 109.46597 * 119.99569 * 2 1 3 33 33 H 1.09002 * 109.46934 * 60.00777 * 5 3 2 34 34 H 1.09001 * 109.47098 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47606 * 300.00115 * 5 3 2 36 36 H 1.07998 * 120.00334 * 359.97438 * 7 6 3 37 37 H 1.08003 * 120.00195 * 179.97438 * 8 7 6 38 38 H 1.08992 * 109.47421 * 270.00337 * 14 13 10 39 39 H 1.09007 * 109.46720 * 30.00347 * 14 13 10 40 40 H 1.09003 * 109.47218 * 150.00128 * 14 13 10 41 41 H 1.08996 * 109.47853 * 179.97438 * 17 15 13 42 42 H 1.09002 * 109.47153 * 300.00008 * 17 15 13 43 43 H 1.08998 * 109.47533 * 59.99637 * 17 15 13 44 44 H 0.96999 * 120.00073 * 179.97438 * 21 20 18 45 45 H 1.08003 * 119.99600 * 179.72105 * 26 9 8 46 46 H 1.07999 * 120.00551 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4444 0.1239 7 6 4.1461 2.0737 1.1961 8 6 5.5238 2.0750 1.3100 9 6 6.2972 1.4474 0.3514 10 16 8.0532 1.4496 0.4962 11 8 8.3877 2.5696 1.3043 12 8 8.5642 1.2575 -0.8157 13 7 8.4751 0.1040 1.3641 14 6 8.5722 0.1746 2.8242 15 6 8.7514 -1.1573 0.6719 16 1 8.6290 -1.0167 -0.4021 17 6 7.7765 -2.2309 1.1595 18 6 10.1645 -1.5918 0.9643 19 1 10.7937 -0.9890 1.6023 20 6 10.6536 -2.7595 0.4181 21 7 9.8872 -3.4938 -0.3584 22 14 12.4050 -3.2984 0.7812 23 1 12.5708 -3.4899 2.2444 24 1 12.6850 -4.5768 0.0793 25 1 13.3517 -2.2567 0.3079 26 6 5.6931 0.8231 -0.7239 27 6 4.3152 0.8172 -0.8350 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5489 2.1251 -1.3970 34 1 1.9989 3.1540 -1.3077 35 1 2.0699 1.5874 -2.1492 36 1 3.5420 2.5644 1.9448 37 1 5.9959 2.5671 2.1475 38 1 9.5873 0.4523 3.1078 39 1 7.8729 0.9221 3.1990 40 1 8.3286 -0.7978 3.2521 41 1 7.9817 -3.1692 0.6443 42 1 7.8985 -2.3716 2.2335 43 1 6.7544 -1.9167 0.9481 44 1 10.2315 -4.3151 -0.7429 45 1 6.2975 0.3367 -1.4752 46 1 3.8431 0.3255 -1.6727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246075571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:12 Heat of formation + Delta-G solvation = -82.145208 kcal Electronic energy + Delta-G solvation = -26319.584304 eV Core-core repulsion = 22720.943268 eV Total energy + Delta-G solvation = -3598.641036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66242 -38.34571 -37.91152 -37.12811 -36.87055 -34.53419 -32.30039 -32.05060 -30.92269 -29.73976 -27.29829 -27.01545 -25.92255 -24.06851 -23.45232 -22.50785 -20.84287 -19.99090 -18.98846 -18.57418 -18.10339 -17.23357 -16.81141 -16.58425 -16.10318 -15.66509 -15.44639 -15.21119 -14.91461 -14.75825 -14.63235 -14.50352 -14.01624 -13.99950 -13.71358 -13.39258 -13.28581 -13.17053 -13.14379 -12.99038 -12.91140 -12.78330 -12.62478 -12.59727 -12.28503 -12.25974 -12.18438 -12.08873 -11.89037 -11.66398 -11.56304 -11.33647 -11.16189 -10.49948 -10.11258 -10.03784 -9.64936 -8.11243 -6.24985 -0.57162 -0.18120 0.30955 1.43592 1.45814 1.52733 2.06413 2.44422 2.53432 2.85640 3.16887 3.31902 3.58326 3.71398 3.92964 4.04980 4.09421 4.14357 4.32777 4.40746 4.42999 4.58693 4.66507 4.68189 4.73775 4.77610 4.82882 4.94973 4.97145 5.01081 5.02013 5.09051 5.11302 5.12469 5.15871 5.18251 5.20260 5.26326 5.33821 5.52982 5.57832 5.60803 5.72324 5.86046 5.87447 6.11627 6.29393 6.81809 7.43672 8.92878 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.003583 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.256376 B = 7813.538635 C = 8620.084910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.054 4.054 4 H 0.098 0.902 5 C -0.147 4.147 6 C -0.022 4.022 7 C -0.138 4.138 8 C -0.028 4.028 9 C -0.683 4.683 10 S 2.688 3.312 11 O -0.988 6.988 12 O -0.998 6.998 13 N -0.989 5.989 14 C 0.100 3.900 15 C 0.272 3.728 16 H 0.027 0.973 17 C -0.136 4.136 18 C -0.540 4.540 19 H 0.057 0.943 20 C 0.019 3.981 21 N -0.913 5.913 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.279 1.279 26 C -0.036 4.036 27 C -0.137 4.137 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.265 0.735 45 H 0.124 0.876 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.112 8.289 3.429 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.072 4.072 4 H 0.116 0.884 5 C -0.204 4.204 6 C -0.022 4.022 7 C -0.156 4.156 8 C -0.048 4.048 9 C -0.773 4.773 10 S 2.783 3.217 11 O -0.978 6.978 12 O -0.989 6.989 13 N -0.828 5.828 14 C -0.045 4.045 15 C 0.168 3.832 16 H 0.045 0.955 17 C -0.195 4.195 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.055 4.055 27 C -0.156 4.156 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.515 8.743 3.003 21.594 hybrid contribution 0.847 -0.815 -0.100 1.180 sum -18.668 7.928 2.904 20.488 Atomic orbital electron populations 1.21805 0.94190 1.02119 1.02609 1.21599 0.97056 0.94828 1.02148 1.20376 0.88228 0.97856 1.00724 0.88363 1.21920 1.02569 1.00209 0.95665 1.20566 0.97117 0.92065 0.92497 1.21528 0.93886 1.00963 0.99254 1.21145 0.94961 0.92901 0.95755 1.30736 1.25804 1.14711 1.06024 1.01592 0.74970 0.72571 0.72523 1.93471 1.83869 1.50552 1.69922 1.93504 1.79273 1.86104 1.39980 1.57279 1.82673 1.26363 1.16510 1.21416 1.01535 1.03293 0.78279 1.18446 0.94434 0.79215 0.91061 0.95497 1.21921 0.95864 1.01335 1.00379 1.21617 0.98377 1.07287 1.30706 0.92427 1.25634 1.01393 0.96396 0.94701 1.69964 1.37409 1.15087 1.32731 0.85649 0.80132 0.77343 0.78740 1.19073 1.20613 1.20497 1.21014 0.96591 0.93289 0.94618 1.21306 0.92342 1.01161 1.00794 0.91620 0.92569 0.92030 0.91987 0.92518 0.90153 0.92700 0.92614 0.81926 0.83348 0.93506 0.89965 0.90230 0.91227 0.93693 0.95140 0.92581 0.85800 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 71.98 0.70 -0.88 16 2 C -0.12 -1.67 5.14 30.59 0.16 -1.51 16 3 C -0.05 -0.75 2.56 -11.54 -0.03 -0.78 16 4 H 0.10 1.08 7.88 -2.39 -0.02 1.06 16 5 C -0.15 -1.83 8.76 71.98 0.63 -1.20 16 6 C -0.02 -0.46 4.78 -19.87 -0.09 -0.55 16 7 C -0.14 -2.90 9.67 22.27 0.22 -2.68 16 8 C -0.03 -0.76 9.52 22.27 0.21 -0.55 16 9 C -0.68 -22.89 5.97 22.27 0.13 -22.75 16 10 S 2.69 110.93 5.64 -56.49 -0.32 110.61 16 11 O -0.99 -41.22 16.36 -128.00 -2.09 -43.31 16 12 O -1.00 -49.14 15.84 -128.00 -2.03 -51.17 16 13 N -0.99 -42.11 3.06 -520.44 -1.59 -43.70 16 14 C 0.10 3.51 9.53 127.77 1.22 4.73 16 15 C 0.27 13.69 2.62 44.24 0.12 13.80 16 16 H 0.03 1.53 6.91 -2.39 -0.02 1.51 16 17 C -0.14 -6.21 8.95 71.98 0.64 -5.57 16 18 C -0.54 -29.68 8.37 25.60 0.21 -29.47 16 19 H 0.06 3.14 7.65 -2.91 -0.02 3.11 16 20 C 0.02 1.03 5.30 84.65 0.45 1.48 16 21 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 22 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C -0.04 -1.15 9.52 22.27 0.21 -0.94 16 27 C -0.14 -3.42 8.76 22.27 0.20 -3.22 16 28 H 0.06 0.59 6.57 -2.38 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 33 H 0.08 0.74 6.57 -2.39 -0.02 0.72 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.75 7.39 -2.39 -0.02 0.73 16 36 H 0.16 2.23 7.95 -2.91 -0.02 2.21 16 37 H 0.15 3.55 7.62 -2.91 -0.02 3.53 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.31 7.79 -2.38 -0.02 2.29 16 40 H 0.08 2.67 6.43 -2.39 -0.02 2.65 16 41 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 42 H 0.04 1.91 6.66 -2.39 -0.02 1.90 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.12 4.30 7.61 -2.91 -0.02 4.28 16 46 H 0.15 2.99 7.16 -2.91 -0.02 2.97 16 Total: -1.00 -69.19 377.19 2.16 -67.03 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.96 Total: 16.32 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 4.97 Total: -50.10 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -1.35 Total: -94.96 kcal Atomic # 8 Polarization: -90.36 SS G_CDS: -4.12 Total: -94.48 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 110.93 SS G_CDS: -0.32 Total: 110.61 kcal Total: -69.19 2.16 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246075571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.113 kcal (2) G-P(sol) polarization free energy of solvation -69.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds