Wall clock time and date at job start Tue Mar 31 2020 16:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47758 * 2 1 4 4 C 1.50706 * 109.47001 * 119.99582 * 2 1 3 5 5 C 1.38228 * 120.00056 * 259.99936 * 4 2 1 6 6 C 1.38241 * 119.99915 * 179.97438 * 5 4 2 7 7 C 1.38228 * 119.99681 * 0.02562 * 6 5 4 8 8 S 1.76203 * 119.99649 * 179.97438 * 7 6 5 9 9 C 1.81404 * 104.44838 * 90.00553 * 8 7 6 10 10 O 1.42100 * 104.28012 * 333.93528 * 8 7 6 11 11 O 1.42100 * 104.27885 * 206.07639 * 8 7 6 12 12 C 1.38234 * 120.00757 * 0.25984 * 7 6 5 13 13 C 1.38234 * 119.99689 * 80.02543 * 4 2 1 14 14 N 1.46896 * 109.47471 * 239.99636 * 2 1 3 15 15 C 1.46906 * 111.00440 * 183.95647 * 14 2 1 16 16 C 1.46906 * 110.99932 * 60.00305 * 14 2 1 17 17 C 1.52998 * 109.46977 * 190.00475 * 16 14 2 18 18 C 1.53001 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47435 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99798 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00211 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99887 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47139 * 90.00240 * 23 21 19 25 25 H 1.48499 * 109.47040 * 210.00211 * 23 21 19 26 26 H 1.48494 * 109.47010 * 330.00239 * 23 21 19 27 27 H 1.08994 * 109.46973 * 300.00142 * 1 2 3 28 28 H 1.09003 * 109.46569 * 60.00610 * 1 2 3 29 29 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00119 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.99727 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47124 * 299.99881 * 9 8 7 33 33 H 1.09001 * 109.46975 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.47147 * 59.99966 * 9 8 7 35 35 H 1.08001 * 120.00506 * 179.72371 * 12 7 6 36 36 H 1.08001 * 120.00591 * 359.97438 * 13 4 2 37 37 H 1.08995 * 109.46940 * 60.00132 * 15 14 2 38 38 H 1.08998 * 109.47294 * 180.02562 * 15 14 2 39 39 H 1.09007 * 109.46638 * 299.99989 * 15 14 2 40 40 H 1.09001 * 109.46326 * 309.99783 * 16 14 2 41 41 H 1.08990 * 109.47127 * 70.00066 * 16 14 2 42 42 H 1.09007 * 109.46970 * 299.99583 * 17 16 14 43 43 H 1.08995 * 109.47839 * 59.99530 * 17 16 14 44 44 H 1.09007 * 109.46845 * 299.99596 * 18 17 16 45 45 H 1.08995 * 109.47239 * 59.99098 * 18 17 16 46 46 H 0.96999 * 119.99684 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.4587 0.0195 2.3243 6 6 2.9189 -0.6321 3.4533 7 6 2.9533 -2.0135 3.4881 8 16 3.5406 -2.8441 4.9269 9 6 2.0604 -3.0817 5.9483 10 8 4.4218 -1.9102 5.5356 11 8 4.0169 -4.0918 4.4414 12 6 2.5324 -2.7434 2.3922 13 6 2.0671 -2.0918 1.2653 14 7 2.0197 -0.6925 -1.1993 15 6 3.4852 -0.7946 -1.1869 16 6 1.5488 -0.0264 -2.4211 17 6 1.8628 -0.9045 -3.6340 18 6 1.3729 -0.2105 -4.9065 19 6 1.6827 -1.0750 -6.1014 20 1 2.1790 -2.0247 -5.9666 21 6 1.3316 -0.6540 -7.3665 22 7 0.7268 0.5022 -7.5305 23 14 1.7150 -1.7261 -8.8475 24 1 0.5740 -2.6409 -9.1051 25 1 1.9378 -0.8655 -10.0370 26 1 2.9380 -2.5239 -8.5777 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4314 1.0989 2.2971 31 1 3.2517 -0.0619 4.3079 32 1 1.6246 -2.1117 6.1878 33 1 2.3338 -3.5944 6.8705 34 1 1.3333 -3.6813 5.4005 35 1 2.5635 -3.8227 2.4179 36 1 1.7340 -2.6621 0.4108 37 1 3.8030 -1.3532 -0.3066 38 1 3.8211 -1.3110 -2.0861 39 1 3.9188 0.2051 -1.1591 40 1 0.4723 0.1323 -2.3563 41 1 2.0520 0.9344 -2.5280 42 1 2.9393 -1.0633 -3.6987 43 1 1.3596 -1.8654 -3.5271 44 1 0.2964 -0.0513 -4.8421 45 1 1.8764 0.7503 -5.0133 46 1 0.4802 0.7985 -8.4206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263833376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:11 Heat of formation + Delta-G solvation = -70.433783 kcal Electronic energy + Delta-G solvation = -24998.300747 eV Core-core repulsion = 21400.167557 eV Total energy + Delta-G solvation = -3598.133190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.90370 -38.74615 -38.11647 -36.95474 -35.88678 -34.15840 -32.46163 -31.94973 -30.89223 -30.19609 -28.68723 -26.32834 -25.36898 -24.00160 -23.58881 -21.73517 -21.03608 -19.98492 -18.75741 -18.47378 -17.36533 -17.14454 -16.89167 -16.60502 -16.53398 -15.99123 -15.79646 -15.56565 -15.06359 -14.75095 -14.43812 -14.38633 -14.21553 -13.95076 -13.90991 -13.82021 -13.55680 -13.30990 -13.12293 -13.04320 -13.01573 -12.77150 -12.69367 -12.55660 -12.45666 -12.23353 -12.12112 -12.09649 -11.96598 -11.52567 -11.39400 -11.26257 -11.09198 -10.54989 -10.09416 -9.96167 -9.34463 -8.20636 -6.31163 -0.82862 -0.17156 0.35783 1.39477 1.40623 1.51786 1.95266 2.39732 2.43849 2.88065 3.07298 3.12509 3.22045 3.56017 3.82895 3.99638 4.09644 4.13766 4.14842 4.20003 4.25715 4.31441 4.42309 4.52285 4.56469 4.61963 4.69130 4.75796 4.80193 4.89771 4.90410 4.99066 5.00963 5.01737 5.12267 5.13499 5.20897 5.23157 5.32967 5.49788 5.54313 5.74473 5.86138 5.88393 6.04045 6.13327 6.27506 6.85575 7.37892 8.91125 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.002083 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.045661 B =13437.869795 C =13931.995142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.110 3.890 3 H 0.054 0.946 4 C -0.026 4.026 5 C -0.142 4.142 6 C -0.031 4.031 7 C -0.665 4.665 8 S 2.506 3.494 9 C -0.624 4.624 10 O -0.977 6.977 11 O -0.980 6.980 12 C -0.037 4.037 13 C -0.124 4.124 14 N -0.536 5.536 15 C 0.021 3.979 16 C 0.065 3.935 17 C -0.089 4.089 18 C 0.027 3.973 19 C -0.542 4.542 20 H 0.057 0.943 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.265 1.265 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.047 0.953 43 H 0.053 0.947 44 H -0.006 1.006 45 H -0.011 1.011 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -3.879 30.687 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 H 0.072 0.928 4 C -0.027 4.027 5 C -0.161 4.161 6 C -0.050 4.050 7 C -0.752 4.752 8 S 2.689 3.311 9 C -0.778 4.778 10 O -0.975 6.975 11 O -0.978 6.978 12 C -0.056 4.056 13 C -0.143 4.143 14 N -0.260 5.260 15 C -0.127 4.127 16 C -0.063 4.063 17 C -0.127 4.127 18 C -0.011 4.011 19 C -0.580 4.580 20 H 0.076 0.924 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.189 1.189 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.012 0.988 45 H 0.007 0.993 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.496 -4.469 30.703 31.030 hybrid contribution -0.203 0.927 -1.707 1.953 sum 0.293 -3.543 28.996 29.213 Atomic orbital electron populations 1.21878 0.92093 1.03105 1.02673 1.20743 0.96846 0.95000 0.87247 0.92821 1.20164 0.93832 0.94354 0.94331 1.21381 1.00327 1.01215 0.93140 1.21127 0.92568 0.92384 0.98876 1.30603 1.19190 1.05512 1.19864 1.04821 0.78007 0.73112 0.75112 1.30030 1.18271 1.14334 1.15147 1.93533 1.63105 1.63722 1.77117 1.93539 1.79777 1.44251 1.80188 1.21141 0.92089 1.00822 0.91500 1.21291 1.00074 0.94337 0.98601 1.62068 1.10588 1.51981 1.01368 1.22449 0.87243 1.00144 1.02838 1.22112 1.00603 0.94773 0.88769 1.21390 0.99808 0.98492 0.92988 1.18960 0.94762 0.94731 0.92628 1.21680 1.38290 1.05165 0.92820 0.92444 1.25972 0.94960 0.96531 1.02428 1.70089 1.42000 1.21756 1.23438 0.85465 0.78964 0.78532 0.78200 1.19669 1.20701 1.18936 0.90196 0.92201 0.91765 0.83585 0.82475 0.82688 0.82887 0.82982 0.83232 0.84711 0.90791 0.91556 0.95801 0.90213 0.95830 0.93456 0.92854 0.98788 0.99278 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.97 71.98 0.65 -2.18 16 2 C 0.11 2.44 2.28 44.17 0.10 2.54 16 3 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 4 C -0.03 -0.53 3.78 -19.87 -0.08 -0.60 16 5 C -0.14 -2.38 9.67 22.27 0.22 -2.17 16 6 C -0.03 -0.48 9.47 22.27 0.21 -0.27 16 7 C -0.67 -10.65 5.66 22.27 0.13 -10.53 16 8 S 2.51 33.42 5.80 -56.49 -0.33 33.09 16 9 C -0.62 -1.45 10.80 113.37 1.22 -0.23 16 10 O -0.98 -19.55 17.13 -127.65 -2.19 -21.74 16 11 O -0.98 -20.74 17.12 -127.65 -2.19 -22.93 16 12 C -0.04 -0.66 9.47 22.27 0.21 -0.45 16 13 C -0.12 -2.54 8.06 22.27 0.18 -2.36 16 14 N -0.54 -14.86 3.97 -901.45 -3.58 -18.43 16 15 C 0.02 0.58 8.94 127.69 1.14 1.72 16 16 C 0.06 2.17 4.77 86.30 0.41 2.58 16 17 C -0.09 -3.68 5.08 30.59 0.16 -3.53 16 18 C 0.03 1.42 4.97 29.85 0.15 1.57 16 19 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 23 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.33 6.20 -2.39 -0.01 1.31 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.15 1.88 8.04 -2.91 -0.02 1.86 16 31 H 0.16 1.79 7.57 -2.91 -0.02 1.77 16 32 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.15 2.29 7.56 -2.91 -0.02 2.27 16 36 H 0.14 2.96 7.72 -2.91 -0.02 2.93 16 37 H 0.07 1.85 6.11 -2.39 -0.01 1.84 16 38 H 0.07 1.95 6.30 -2.39 -0.02 1.94 16 39 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.08 2.61 5.83 -2.39 -0.01 2.60 16 41 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 42 H 0.05 1.95 6.47 -2.38 -0.02 1.93 16 43 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 44 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 45 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.66 381.90 0.37 -77.29 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.95 Total: 7.21 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 5.39 Total: -44.49 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.29 Total: -75.13 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -4.37 Total: -44.67 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 33.42 SS G_CDS: -0.33 Total: 33.09 kcal Total: -77.66 0.37 -77.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263833376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.856 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds