Wall clock time and date at job start Tue Mar 31 2020 14:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 H 1.09005 * 109.46826 * 307.63505 * 3 2 1 5 5 C 1.50699 * 109.47376 * 187.63493 * 3 2 1 6 6 C 1.38231 * 119.99861 * 264.71770 * 5 3 2 7 7 C 1.38240 * 119.99713 * 179.78776 * 6 5 3 8 8 C 1.38242 * 119.99800 * 0.44370 * 7 6 5 9 9 C 1.38238 * 119.99953 * 359.80951 * 8 7 6 10 10 C 1.38227 * 120.00074 * 359.97438 * 9 8 7 11 11 N 1.46497 * 109.47070 * 67.63429 * 3 2 1 12 12 C 1.46503 * 120.00248 * 13.91637 * 11 3 2 13 13 C 1.53004 * 109.46970 * 86.89758 * 12 11 3 14 14 S 1.65602 * 120.00094 * 193.91951 * 11 3 2 15 15 O 1.42106 * 104.27836 * 206.07366 * 14 11 3 16 16 O 1.42105 * 104.27517 * 333.92693 * 14 11 3 17 17 C 1.81395 * 104.45239 * 89.99967 * 14 11 3 18 18 C 1.52993 * 109.47371 * 180.02562 * 17 14 11 19 19 C 1.50705 * 109.47314 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99857 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99950 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00111 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47167 * 90.00104 * 23 21 19 25 25 H 1.48506 * 109.47084 * 209.99933 * 23 21 19 26 26 H 1.48498 * 109.47177 * 329.99848 * 23 21 19 27 27 H 1.09001 * 109.47019 * 308.43566 * 1 2 3 28 28 H 1.08997 * 109.47296 * 68.43183 * 1 2 3 29 29 H 1.08997 * 109.47508 * 188.43781 * 1 2 3 30 30 H 1.09002 * 109.47389 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47139 * 119.99855 * 2 1 3 32 32 H 1.07991 * 120.00304 * 359.97438 * 6 5 3 33 33 H 1.07997 * 120.00288 * 180.27431 * 7 6 5 34 34 H 1.07994 * 119.99810 * 179.83754 * 8 7 6 35 35 H 1.07999 * 119.99364 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.00093 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47525 * 206.89889 * 12 11 3 38 38 H 1.09003 * 109.47126 * 326.90094 * 12 11 3 39 39 H 1.08993 * 109.46901 * 179.26475 * 13 12 11 40 40 H 1.09000 * 109.47138 * 299.26479 * 13 12 11 41 41 H 1.09001 * 109.46602 * 59.26276 * 13 12 11 42 42 H 1.09005 * 109.47030 * 300.00136 * 17 14 11 43 43 H 1.09001 * 109.47395 * 60.00068 * 17 14 11 44 44 H 1.08999 * 109.47459 * 300.00320 * 18 17 14 45 45 H 1.08997 * 109.47142 * 60.00081 * 18 17 14 46 46 H 0.96996 * 120.00125 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5695 1.9942 -0.8139 5 6 3.5352 1.4466 -0.1888 6 6 4.3705 1.5058 0.9110 7 6 5.7420 1.5052 0.7380 8 6 6.2780 1.4546 -0.5352 9 6 5.4426 1.4007 -1.6352 10 6 4.0712 1.3968 -1.4620 11 7 1.7074 2.0780 1.2773 12 6 1.2727 1.2592 2.4117 13 6 2.4978 0.7721 3.1882 14 16 1.8225 3.7221 1.4389 15 8 2.0483 3.9229 2.8274 16 8 2.7964 4.1015 0.4760 17 6 0.1842 4.3395 0.9645 18 6 0.1631 5.8655 1.0731 19 6 -1.1979 6.3784 0.6784 20 1 -1.9706 5.6854 0.3804 21 6 -1.4567 7.7325 0.6988 22 7 -2.6443 8.1803 0.3539 23 14 -0.1204 8.9313 1.2150 24 1 0.6572 9.3500 0.0211 25 1 -0.7417 10.1243 1.8444 26 1 0.7858 8.2727 2.1899 27 1 -0.3633 0.6388 0.8050 28 1 -0.3634 0.3778 -0.9557 29 1 -0.3634 -1.0165 0.1508 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9517 1.5495 1.9055 33 1 6.3947 1.5470 1.5974 34 1 7.3495 1.4568 -0.6705 35 1 5.8614 1.3608 -2.6299 36 1 3.4184 1.3551 -2.3215 37 1 0.6396 1.8555 3.0688 38 1 0.7096 0.4007 2.0456 39 1 2.1739 0.1738 4.0396 40 1 3.1243 0.1650 2.5347 41 1 3.0679 1.6307 3.5431 42 1 -0.0314 4.0457 -0.0628 43 1 -0.5697 3.9172 1.6290 44 1 0.3789 6.1597 2.1002 45 1 0.9168 6.2875 0.4083 46 1 -2.8266 9.1328 0.3686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264800003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:21 Heat of formation + Delta-G solvation = -40.412360 kcal Electronic energy + Delta-G solvation = -27067.940127 eV Core-core repulsion = 23471.108764 eV Total energy + Delta-G solvation = -3596.831364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.87188 -37.51873 -36.72030 -35.49001 -33.95159 -33.12570 -31.51430 -31.41090 -30.75879 -29.94021 -26.11354 -25.82528 -23.25277 -22.41566 -22.13101 -21.26907 -20.57825 -18.46889 -17.77352 -17.11873 -16.96995 -16.24237 -15.60624 -15.31867 -15.11942 -14.66497 -14.36225 -14.17683 -14.05152 -13.61725 -13.43281 -13.41996 -13.10255 -13.00527 -12.80245 -12.48211 -12.09884 -11.93912 -11.90126 -11.78670 -11.63577 -11.56668 -11.32377 -11.25673 -11.16544 -11.00555 -10.98071 -10.79622 -10.60087 -10.44203 -10.13538 -9.72050 -9.43238 -8.96783 -8.81859 -8.66635 -8.56853 -6.17106 -4.18241 0.65120 1.42365 1.49356 2.90569 3.26275 3.33503 3.38102 3.82773 4.21513 4.35594 4.44444 4.59040 4.60639 4.85453 4.89529 4.99239 5.04945 5.12492 5.14737 5.15259 5.20995 5.28864 5.40883 5.45026 5.48247 5.56682 5.59754 5.62632 5.69816 5.73288 5.78320 5.90886 6.03137 6.04102 6.12242 6.16732 6.25018 6.28944 6.51511 6.53541 6.58762 6.78579 6.81608 6.94007 7.08148 7.54417 8.36245 8.83915 9.42802 10.95309 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004175 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.800621 B = 6704.941779 C = 7233.730239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C 0.197 3.803 4 H 0.090 0.910 5 C -0.081 4.081 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.108 4.108 11 N -0.998 5.998 12 C 0.105 3.895 13 C -0.183 4.183 14 S 2.581 3.419 15 O -0.962 6.962 16 O -0.951 6.951 17 C -0.586 4.586 18 C -0.006 4.006 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.868 3.132 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.031 0.969 45 H 0.027 0.973 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -20.250 -0.248 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.160 4.160 3 C 0.090 3.910 4 H 0.108 0.892 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.127 4.127 11 N -0.834 5.834 12 C -0.020 4.020 13 C -0.241 4.241 14 S 2.680 3.320 15 O -0.952 6.952 16 O -0.941 6.941 17 C -0.718 4.718 18 C -0.045 4.045 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.424 -19.647 0.031 23.246 hybrid contribution -0.008 0.733 -0.033 0.734 sum 12.417 -18.913 -0.001 22.625 Atomic orbital electron populations 1.22016 0.94953 1.02119 1.02991 1.21793 0.96447 0.94434 1.03337 1.19693 0.90786 0.95212 0.85267 0.89184 1.20133 0.95360 0.99213 0.93605 1.21530 0.93451 0.99084 0.99821 1.21115 0.95204 1.00417 0.97146 1.21090 0.99433 1.00978 0.92884 1.21038 0.93547 1.00695 0.98544 1.20873 0.95246 1.00298 0.96279 1.57932 1.82765 1.25028 1.17671 1.21505 0.96973 0.96898 0.86623 1.22492 0.99297 1.02019 1.00295 1.06019 0.78611 0.72606 0.74801 1.93544 1.85358 1.84006 1.32338 1.93588 1.56646 1.80985 1.62891 1.30353 1.20319 1.09638 1.11523 1.19391 1.00576 0.86534 0.98022 1.20846 0.95571 0.92985 1.46380 0.90415 1.24975 0.95460 0.98254 0.94342 1.69879 1.21070 1.14633 1.47773 0.86946 0.82570 0.81179 0.79910 1.19623 1.20683 1.18651 0.91274 0.92213 0.92390 0.90555 0.90564 0.84758 0.86487 0.86550 0.86328 0.86153 0.89987 0.88866 0.91630 0.91703 0.91368 0.85811 0.85813 0.95090 0.95476 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.11 37.15 0.34 -0.95 16 2 C -0.12 -1.03 4.88 -26.73 -0.13 -1.16 16 3 C 0.20 2.27 2.18 -69.09 -0.15 2.12 16 4 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 5 C -0.08 -1.06 3.79 -104.62 -0.40 -1.45 16 6 C -0.12 -1.64 7.95 -39.58 -0.31 -1.96 16 7 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 8 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 9 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 10 C -0.11 -1.31 9.72 -39.58 -0.38 -1.70 16 11 N -1.00 -12.80 1.75 -108.53 -0.19 -12.99 16 12 C 0.10 1.10 4.55 -4.04 -0.02 1.08 16 13 C -0.18 -1.83 8.35 37.16 0.31 -1.52 16 14 S 2.58 45.06 5.18 -107.50 -0.56 44.51 16 15 O -0.96 -18.85 16.55 -57.54 -0.95 -19.80 16 16 O -0.95 -18.96 15.81 -57.54 -0.91 -19.87 16 17 C -0.59 -10.92 6.11 37.15 0.23 -10.70 16 18 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 19 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 20 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 23 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 27 H 0.07 0.57 5.79 -51.93 -0.30 0.27 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.08 0.61 5.96 -51.93 -0.31 0.30 16 32 H 0.13 1.77 3.38 -52.49 -0.18 1.59 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 38 H 0.09 0.74 4.09 -51.93 -0.21 0.53 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.61 5.79 -51.93 -0.30 0.31 16 41 H 0.07 0.83 6.99 -51.93 -0.36 0.47 16 42 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 43 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 44 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 45 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -34.57 367.37 -10.29 -44.86 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.06 Total: 2.05 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: -2.25 Total: -34.96 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.58 Total: -39.34 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.86 Total: -39.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 45.06 SS G_CDS: -0.56 Total: 44.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.57 -10.29 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264800003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.446 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds