Wall clock time and date at job start Tue Mar 31 2020 14:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 H 1.09005 * 109.46826 * 307.63505 * 3 2 1 5 5 C 1.50699 * 109.47376 * 187.63493 * 3 2 1 6 6 C 1.38231 * 119.99861 * 264.71770 * 5 3 2 7 7 C 1.38240 * 119.99713 * 179.78776 * 6 5 3 8 8 C 1.38242 * 119.99800 * 0.44370 * 7 6 5 9 9 C 1.38238 * 119.99953 * 359.80951 * 8 7 6 10 10 C 1.38227 * 120.00074 * 359.97438 * 9 8 7 11 11 N 1.46497 * 109.47070 * 67.63429 * 3 2 1 12 12 C 1.46503 * 120.00248 * 13.91637 * 11 3 2 13 13 C 1.53004 * 109.46970 * 86.89758 * 12 11 3 14 14 S 1.65602 * 120.00094 * 193.91951 * 11 3 2 15 15 O 1.42106 * 104.27836 * 206.07366 * 14 11 3 16 16 O 1.42105 * 104.27517 * 333.92693 * 14 11 3 17 17 C 1.81395 * 104.45239 * 89.99967 * 14 11 3 18 18 C 1.52993 * 109.47371 * 180.02562 * 17 14 11 19 19 C 1.50705 * 109.47314 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99857 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99950 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00111 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47167 * 90.00104 * 23 21 19 25 25 H 1.48506 * 109.47084 * 209.99933 * 23 21 19 26 26 H 1.48498 * 109.47177 * 329.99848 * 23 21 19 27 27 H 1.09001 * 109.47019 * 308.43566 * 1 2 3 28 28 H 1.08997 * 109.47296 * 68.43183 * 1 2 3 29 29 H 1.08997 * 109.47508 * 188.43781 * 1 2 3 30 30 H 1.09002 * 109.47389 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47139 * 119.99855 * 2 1 3 32 32 H 1.07991 * 120.00304 * 359.97438 * 6 5 3 33 33 H 1.07997 * 120.00288 * 180.27431 * 7 6 5 34 34 H 1.07994 * 119.99810 * 179.83754 * 8 7 6 35 35 H 1.07999 * 119.99364 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.00093 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47525 * 206.89889 * 12 11 3 38 38 H 1.09003 * 109.47126 * 326.90094 * 12 11 3 39 39 H 1.08993 * 109.46901 * 179.26475 * 13 12 11 40 40 H 1.09000 * 109.47138 * 299.26479 * 13 12 11 41 41 H 1.09001 * 109.46602 * 59.26276 * 13 12 11 42 42 H 1.09005 * 109.47030 * 300.00136 * 17 14 11 43 43 H 1.09001 * 109.47395 * 60.00068 * 17 14 11 44 44 H 1.08999 * 109.47459 * 300.00320 * 18 17 14 45 45 H 1.08997 * 109.47142 * 60.00081 * 18 17 14 46 46 H 0.96996 * 120.00125 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5695 1.9942 -0.8139 5 6 3.5352 1.4466 -0.1888 6 6 4.3705 1.5058 0.9110 7 6 5.7420 1.5052 0.7380 8 6 6.2780 1.4546 -0.5352 9 6 5.4426 1.4007 -1.6352 10 6 4.0712 1.3968 -1.4620 11 7 1.7074 2.0780 1.2773 12 6 1.2727 1.2592 2.4117 13 6 2.4978 0.7721 3.1882 14 16 1.8225 3.7221 1.4389 15 8 2.0483 3.9229 2.8274 16 8 2.7964 4.1015 0.4760 17 6 0.1842 4.3395 0.9645 18 6 0.1631 5.8655 1.0731 19 6 -1.1979 6.3784 0.6784 20 1 -1.9706 5.6854 0.3804 21 6 -1.4567 7.7325 0.6988 22 7 -2.6443 8.1803 0.3539 23 14 -0.1204 8.9313 1.2150 24 1 0.6572 9.3500 0.0211 25 1 -0.7417 10.1243 1.8444 26 1 0.7858 8.2727 2.1899 27 1 -0.3633 0.6388 0.8050 28 1 -0.3634 0.3778 -0.9557 29 1 -0.3634 -1.0165 0.1508 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9517 1.5495 1.9055 33 1 6.3947 1.5470 1.5974 34 1 7.3495 1.4568 -0.6705 35 1 5.8614 1.3608 -2.6299 36 1 3.4184 1.3551 -2.3215 37 1 0.6396 1.8555 3.0688 38 1 0.7096 0.4007 2.0456 39 1 2.1739 0.1738 4.0396 40 1 3.1243 0.1650 2.5347 41 1 3.0679 1.6307 3.5431 42 1 -0.0314 4.0457 -0.0628 43 1 -0.5697 3.9172 1.6290 44 1 0.3789 6.1597 2.1002 45 1 0.9168 6.2875 0.4083 46 1 -2.8266 9.1328 0.3686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264800003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:20 Heat of formation + Delta-G solvation = -61.858507 kcal Electronic energy + Delta-G solvation = -27068.870102 eV Core-core repulsion = 23471.108764 eV Total energy + Delta-G solvation = -3597.761338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.75866 -38.43243 -38.15660 -36.97434 -35.92380 -33.95564 -33.49856 -32.22776 -31.65151 -30.86046 -27.90298 -26.79054 -24.11807 -23.42138 -23.04652 -22.87325 -21.58910 -19.78613 -19.26954 -18.60656 -18.06186 -17.34940 -16.94944 -16.51848 -16.41835 -16.15956 -15.53046 -15.36177 -15.07453 -14.89196 -14.82248 -14.27574 -14.25162 -13.96271 -13.88654 -13.82678 -13.33066 -13.15137 -13.08028 -13.06106 -12.97842 -12.95510 -12.83366 -12.56211 -12.27910 -12.08254 -12.02135 -11.84619 -11.76062 -11.70895 -11.59930 -11.50757 -11.15279 -10.86808 -10.05889 -9.72881 -9.47834 -8.38970 -6.44565 -0.74547 0.52549 0.58083 1.28947 1.30896 1.40902 1.69230 2.26929 2.81710 2.93128 2.94702 3.15223 3.64080 3.75101 3.92967 3.96918 4.02547 4.12437 4.22808 4.25197 4.33042 4.35734 4.43349 4.51452 4.55550 4.63082 4.65972 4.78115 4.83054 4.90684 4.98192 5.03285 5.05748 5.13512 5.17544 5.21626 5.22095 5.32835 5.40767 5.44504 5.55924 5.62114 5.63523 5.68919 5.86746 6.14601 6.20906 6.61015 7.19910 8.76595 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004175 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.800621 B = 6704.941779 C = 7233.730239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.113 4.113 3 C 0.189 3.811 4 H 0.091 0.909 5 C -0.095 4.095 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.134 4.134 9 C -0.126 4.126 10 C -0.123 4.123 11 N -0.985 5.985 12 C 0.095 3.905 13 C -0.181 4.181 14 S 2.604 3.396 15 O -0.986 6.986 16 O -0.976 6.976 17 C -0.592 4.592 18 C -0.014 4.014 19 C -0.527 4.527 20 H 0.051 0.949 21 C 0.017 3.983 22 N -0.938 5.938 23 Si 0.921 3.079 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.253 1.253 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 -21.929 -0.402 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.108 0.892 5 C -0.096 4.096 6 C -0.163 4.163 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.144 4.144 10 C -0.141 4.141 11 N -0.823 5.823 12 C -0.029 4.029 13 C -0.239 4.239 14 S 2.701 3.299 15 O -0.976 6.976 16 O -0.967 6.967 17 C -0.723 4.723 18 C -0.053 4.053 19 C -0.566 4.566 20 H 0.069 0.931 21 C -0.182 4.182 22 N -0.577 5.577 23 Si 0.744 3.256 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.177 1.177 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.637 -21.317 -0.121 25.306 hybrid contribution -0.399 1.130 -0.021 1.199 sum 13.237 -20.187 -0.142 24.140 Atomic orbital electron populations 1.22041 0.94381 1.03083 1.02743 1.21777 0.96764 0.92208 1.04404 1.19970 0.90410 0.96985 0.84271 0.89151 1.20339 0.95958 0.99423 0.93906 1.21702 0.94200 1.00336 1.00078 1.21407 0.95281 1.00568 0.98272 1.21425 1.00800 1.00387 0.92569 1.21412 0.93490 0.99796 0.99738 1.21203 0.96055 1.00253 0.96619 1.57561 1.82467 1.23116 1.19153 1.21845 0.97558 0.97520 0.85991 1.22475 0.98882 1.01405 1.01186 1.05094 0.77384 0.73714 0.73678 1.93508 1.85355 1.85144 1.33571 1.93547 1.57192 1.82375 1.63543 1.30367 1.22710 1.06175 1.13065 1.19332 0.98119 0.90346 0.97541 1.21153 0.96878 0.92851 1.45709 0.93069 1.25823 0.97590 1.00253 0.94525 1.69996 1.23052 1.15320 1.49357 0.86087 0.80119 0.79255 0.80181 1.18509 1.19536 1.17685 0.91745 0.92443 0.90691 0.89258 0.89734 0.85002 0.85301 0.84330 0.83984 0.84425 0.90161 0.85759 0.89347 0.90963 0.93897 0.84458 0.84343 0.95357 0.95496 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.11 71.98 0.66 -1.48 16 2 C -0.11 -1.60 4.88 30.59 0.15 -1.45 16 3 C 0.19 4.05 2.18 44.24 0.10 4.15 16 4 H 0.09 1.92 8.11 -2.38 -0.02 1.90 16 5 C -0.09 -2.33 3.79 -19.87 -0.08 -2.41 16 6 C -0.15 -3.82 7.95 22.27 0.18 -3.64 16 7 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 8 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 9 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 10 C -0.12 -2.77 9.72 22.27 0.22 -2.56 16 11 N -0.99 -23.98 1.75 -497.28 -0.87 -24.85 16 12 C 0.09 1.80 4.55 86.38 0.39 2.20 16 13 C -0.18 -3.35 8.35 71.98 0.60 -2.75 16 14 S 2.60 89.55 5.18 -56.49 -0.29 89.26 16 15 O -0.99 -38.39 16.55 -127.65 -2.11 -40.51 16 16 O -0.98 -38.61 15.81 -127.65 -2.02 -40.63 16 17 C -0.59 -21.88 6.11 71.98 0.44 -21.44 16 18 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 19 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 20 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 21 C 0.02 0.99 5.47 84.65 0.46 1.45 16 22 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 23 Si 0.92 44.43 27.47 68.60 1.88 46.31 16 24 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.25 -11.74 6.54 99.48 0.65 -11.08 16 27 H 0.06 0.89 5.79 -2.39 -0.01 0.88 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.08 1.08 5.96 -2.39 -0.01 1.07 16 32 H 0.13 3.42 3.38 -2.91 -0.01 3.41 16 33 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.08 1.58 7.68 -2.39 -0.02 1.56 16 38 H 0.12 1.61 4.09 -2.39 -0.01 1.60 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.23 5.79 -2.39 -0.01 1.21 16 41 H 0.04 1.02 6.99 -2.39 -0.02 1.00 16 42 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 43 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 44 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 45 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.21 367.37 1.96 -73.25 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.91 Total: 21.20 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 4.16 Total: -66.56 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -0.57 Total: -82.32 kcal Atomic # 8 Polarization: -77.01 SS G_CDS: -4.13 Total: -81.14 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 89.55 SS G_CDS: -0.29 Total: 89.26 kcal Total: -75.21 1.96 -73.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264800003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.393 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds