Wall clock time and date at job start Tue Mar 31 2020 16:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38568 * 120.05336 * 359.72356 * 3 2 1 5 5 C 1.38430 * 119.96867 * 179.79084 * 4 3 2 6 6 F 1.35101 * 119.94807 * 180.25401 * 5 4 3 7 7 C 1.38448 * 120.09591 * 0.49003 * 5 4 3 8 8 C 1.50703 * 119.93697 * 179.77032 * 7 5 4 9 9 H 1.08997 * 109.47182 * 324.97455 * 8 7 5 10 10 C 1.52994 * 109.47273 * 84.97643 * 8 7 5 11 11 N 1.46505 * 109.46727 * 204.97420 * 8 7 5 12 12 C 1.34779 * 119.99707 * 154.99845 * 11 8 7 13 13 O 1.21280 * 120.00302 * 0.02562 * 12 11 8 14 14 C 1.50702 * 119.99894 * 179.97438 * 12 11 8 15 15 C 1.52996 * 109.46997 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47141 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99904 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00269 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46734 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.47130 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47029 * 300.00359 * 20 18 16 24 24 C 1.38247 * 120.12238 * 359.73954 * 7 5 4 25 25 C 1.38543 * 120.02314 * 0.02694 * 24 7 5 26 26 O 1.36038 * 120.04598 * 179.97438 * 25 24 7 27 27 C 1.42899 * 117.00425 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 31 31 H 1.07993 * 120.01654 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.47158 * 299.99686 * 10 8 7 33 33 H 1.09005 * 109.47465 * 59.99864 * 10 8 7 34 34 H 1.09005 * 109.47123 * 179.97438 * 10 8 7 35 35 H 0.96992 * 120.00050 * 334.99770 * 11 8 7 36 36 H 1.08995 * 109.46981 * 300.00256 * 14 12 11 37 37 H 1.09004 * 109.46629 * 60.00003 * 14 12 11 38 38 H 1.09007 * 109.47332 * 300.00329 * 15 14 12 39 39 H 1.08998 * 109.47019 * 60.00452 * 15 14 12 40 40 H 0.97007 * 120.00807 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.99187 * 180.02562 * 24 7 5 42 42 H 1.08994 * 109.47170 * 180.02562 * 27 26 25 43 43 H 1.09004 * 109.46574 * 300.00278 * 27 26 25 44 44 H 1.08999 * 109.46854 * 59.99560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2930 2.3745 -0.0058 5 6 1.9233 3.6070 -0.0014 6 9 1.1882 4.7405 -0.0019 7 6 3.3059 3.6797 -0.0015 8 6 3.9884 5.0233 -0.0019 9 1 3.4026 5.7281 -0.5919 10 6 4.1068 5.5357 1.4348 11 7 5.3258 4.8914 -0.5851 12 6 5.9220 5.9589 -1.1521 13 8 5.3516 7.0288 -1.1791 14 6 7.2981 5.8234 -1.7515 15 6 7.7398 7.1715 -2.3243 16 6 9.1156 7.0359 -2.9243 17 1 9.6241 6.0835 -2.8991 18 6 9.7254 8.1279 -3.5044 19 7 9.1064 9.2878 -3.5345 20 14 11.4311 7.9600 -4.2474 21 1 11.4004 6.9473 -5.3332 22 1 11.8603 9.2687 -4.8024 23 1 12.3886 7.5303 -3.1968 24 6 4.0615 2.5219 -0.0005 25 6 3.4358 1.2858 0.0000 26 8 4.1789 0.1463 0.0004 27 6 5.5998 0.2983 0.0009 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2145 2.3194 -0.0099 32 1 3.1117 5.6338 1.8687 33 1 4.6926 4.8308 2.0249 34 1 4.6009 6.5073 1.4345 35 1 5.7822 4.0358 -0.5632 36 1 8.0008 5.5080 -0.9804 37 1 7.2755 5.0802 -2.5486 38 1 7.0369 7.4866 -3.0956 39 1 7.7623 7.9150 -1.5276 40 1 9.5353 10.0561 -3.9430 41 1 5.1399 2.5811 -0.0002 42 1 6.0703 -0.6849 0.0008 43 1 5.9066 0.8478 -0.8891 44 1 5.9060 0.8480 0.8909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291599260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:21 Heat of formation + Delta-G solvation = -135.908427 kcal Electronic energy + Delta-G solvation = -27442.639824 eV Core-core repulsion = 23275.454264 eV Total energy + Delta-G solvation = -4167.185560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.10542 -41.02332 -39.44963 -38.82692 -37.47096 -35.01028 -33.45282 -31.67604 -30.61437 -30.46384 -29.55097 -27.62521 -27.32096 -25.79123 -23.87134 -22.90273 -21.96903 -20.76178 -19.88521 -18.92154 -17.86897 -17.72865 -16.97152 -16.58958 -16.19265 -15.83359 -15.67407 -15.60979 -15.55493 -15.00587 -14.88490 -14.75391 -14.58257 -14.41498 -13.60378 -13.41745 -13.08991 -12.95793 -12.78554 -12.44896 -12.25959 -12.17087 -12.04464 -11.91292 -11.66816 -11.55904 -11.17063 -11.08703 -10.94385 -10.89855 -10.62273 -9.96155 -9.67448 -9.23024 -9.17278 -9.02606 -8.91112 -8.32017 -8.09217 -5.95994 -4.00677 0.70645 0.84299 2.77794 2.87380 3.08617 3.23168 3.34054 3.37966 3.39737 3.44323 3.93136 4.19549 4.24338 4.47094 4.59699 4.68849 4.75607 4.78826 4.87715 4.88987 5.01364 5.08967 5.22605 5.24039 5.31809 5.38764 5.40344 5.54607 5.63597 5.66537 5.75759 6.04117 6.14492 6.20223 6.21445 6.25536 6.58554 6.69023 6.87304 7.11368 7.73574 7.81552 7.86011 8.07059 8.38074 8.74614 9.07623 9.62785 11.14857 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.002580 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.822601 B =10848.837735 C =11879.808258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.300 6.300 3 C 0.124 3.876 4 C -0.205 4.205 5 C 0.112 3.888 6 F -0.130 7.130 7 C -0.112 4.112 8 C 0.186 3.814 9 H 0.101 0.899 10 C -0.156 4.156 11 N -0.740 5.740 12 C 0.511 3.489 13 O -0.529 6.529 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.142 4.142 25 C 0.099 3.901 26 O -0.303 6.303 27 C 0.021 3.979 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.149 0.851 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.145 0.855 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -21.325 10.749 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.213 6.213 3 C 0.078 3.922 4 C -0.225 4.225 5 C 0.092 3.908 6 F -0.109 7.109 7 C -0.114 4.114 8 C 0.080 3.920 9 H 0.119 0.881 10 C -0.214 4.214 11 N -0.396 5.396 12 C 0.300 3.700 13 O -0.404 6.404 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.161 4.161 25 C 0.053 3.947 26 O -0.216 6.216 27 C -0.074 4.074 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.608 -20.676 10.655 28.580 hybrid contribution 0.929 0.000 -0.410 1.016 sum -15.679 -20.676 10.244 27.897 Atomic orbital electron populations 1.23145 0.78191 1.04326 1.01535 1.86209 1.21327 1.25159 1.88640 1.17859 0.88906 0.84827 1.00578 1.20927 1.01072 0.90181 1.10270 1.16915 0.88046 0.81852 1.03966 1.91523 1.76793 1.48732 1.93815 1.19755 0.91800 0.96129 1.03730 1.19553 0.84545 0.92145 0.95717 0.88098 1.22144 1.02337 1.02278 0.94688 1.46394 1.17685 1.13605 1.61926 1.21597 0.88915 0.83041 0.76442 1.90677 1.65788 1.27101 1.56821 1.21879 0.90313 1.04532 1.00248 1.18894 0.95632 0.89040 0.96455 1.21173 1.01550 0.95888 1.38023 0.92683 1.25024 0.97821 0.95357 0.96173 1.69984 1.37858 1.00497 1.44440 0.86653 0.84565 0.77221 0.79485 1.20256 1.21286 1.20262 1.20663 1.00561 0.89733 1.05154 1.18138 0.88235 0.86150 1.02217 1.86190 1.18996 1.27598 1.88845 1.23179 0.78116 1.04396 1.01713 0.87880 0.92409 0.92449 0.83300 0.91756 0.92343 0.90947 0.77160 0.90208 0.90243 0.95797 0.95782 0.92875 0.83712 0.87818 0.92174 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -2.94 10.28 -34.26 -0.35 -3.29 16 3 C 0.12 1.29 6.70 -39.13 -0.26 1.03 16 4 C -0.20 -1.97 9.01 -39.39 -0.36 -2.32 16 5 C 0.11 1.27 7.24 -39.43 -0.29 0.99 16 6 F -0.13 -1.60 16.55 2.25 0.04 -1.56 16 7 C -0.11 -1.29 5.06 -104.54 -0.53 -1.82 16 8 C 0.19 2.49 2.55 -69.08 -0.18 2.31 16 9 H 0.10 1.60 7.22 -51.93 -0.37 1.22 16 10 C -0.16 -1.92 9.47 37.15 0.35 -1.57 16 11 N -0.74 -10.38 5.00 -54.93 -0.27 -10.66 16 12 C 0.51 9.72 7.79 -10.98 -0.09 9.63 16 13 O -0.53 -12.38 15.64 5.56 0.09 -12.29 16 14 C -0.13 -2.59 5.64 -27.88 -0.16 -2.74 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.42 13.29 55.43 0.74 -26.69 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.14 -1.42 8.22 -39.47 -0.32 -1.74 16 25 C 0.10 1.04 6.70 -39.14 -0.26 0.78 16 26 O -0.30 -3.10 10.28 -34.40 -0.35 -3.45 16 27 C 0.02 0.14 9.81 101.05 0.99 1.13 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 31 H 0.15 1.06 6.30 -52.49 -0.33 0.73 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.39 4.25 6.20 -40.82 -0.25 4.00 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.15 1.16 4.30 -52.48 -0.23 0.93 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 44 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -35.70 372.66 -6.28 -41.97 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.12 Total: -0.28 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.63 Total: -5.95 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.46 Total: -37.34 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.62 Total: -19.04 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.70 -6.28 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291599260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.936 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds