Wall clock time and date at job start Tue Mar 31 2020 16:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38568 * 120.05336 * 359.72356 * 3 2 1 5 5 C 1.38430 * 119.96867 * 179.79084 * 4 3 2 6 6 F 1.35101 * 119.94807 * 180.25401 * 5 4 3 7 7 C 1.38448 * 120.09591 * 0.49003 * 5 4 3 8 8 C 1.50703 * 119.93697 * 179.77032 * 7 5 4 9 9 H 1.08997 * 109.47182 * 324.97455 * 8 7 5 10 10 C 1.52994 * 109.47273 * 84.97643 * 8 7 5 11 11 N 1.46505 * 109.46727 * 204.97420 * 8 7 5 12 12 C 1.34779 * 119.99707 * 154.99845 * 11 8 7 13 13 O 1.21280 * 120.00302 * 0.02562 * 12 11 8 14 14 C 1.50702 * 119.99894 * 179.97438 * 12 11 8 15 15 C 1.52996 * 109.46997 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47141 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99904 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00269 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46734 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.47130 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47029 * 300.00359 * 20 18 16 24 24 C 1.38247 * 120.12238 * 359.73954 * 7 5 4 25 25 C 1.38543 * 120.02314 * 0.02694 * 24 7 5 26 26 O 1.36038 * 120.04598 * 179.97438 * 25 24 7 27 27 C 1.42899 * 117.00425 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 31 31 H 1.07993 * 120.01654 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.47158 * 299.99686 * 10 8 7 33 33 H 1.09005 * 109.47465 * 59.99864 * 10 8 7 34 34 H 1.09005 * 109.47123 * 179.97438 * 10 8 7 35 35 H 0.96992 * 120.00050 * 334.99770 * 11 8 7 36 36 H 1.08995 * 109.46981 * 300.00256 * 14 12 11 37 37 H 1.09004 * 109.46629 * 60.00003 * 14 12 11 38 38 H 1.09007 * 109.47332 * 300.00329 * 15 14 12 39 39 H 1.08998 * 109.47019 * 60.00452 * 15 14 12 40 40 H 0.97007 * 120.00807 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.99187 * 180.02562 * 24 7 5 42 42 H 1.08994 * 109.47170 * 180.02562 * 27 26 25 43 43 H 1.09004 * 109.46574 * 300.00278 * 27 26 25 44 44 H 1.08999 * 109.46854 * 59.99560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2930 2.3745 -0.0058 5 6 1.9233 3.6070 -0.0014 6 9 1.1882 4.7405 -0.0019 7 6 3.3059 3.6797 -0.0015 8 6 3.9884 5.0233 -0.0019 9 1 3.4026 5.7281 -0.5919 10 6 4.1068 5.5357 1.4348 11 7 5.3258 4.8914 -0.5851 12 6 5.9220 5.9589 -1.1521 13 8 5.3516 7.0288 -1.1791 14 6 7.2981 5.8234 -1.7515 15 6 7.7398 7.1715 -2.3243 16 6 9.1156 7.0359 -2.9243 17 1 9.6241 6.0835 -2.8991 18 6 9.7254 8.1279 -3.5044 19 7 9.1064 9.2878 -3.5345 20 14 11.4311 7.9600 -4.2474 21 1 11.4004 6.9473 -5.3332 22 1 11.8603 9.2687 -4.8024 23 1 12.3886 7.5303 -3.1968 24 6 4.0615 2.5219 -0.0005 25 6 3.4358 1.2858 0.0000 26 8 4.1789 0.1463 0.0004 27 6 5.5998 0.2983 0.0009 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2145 2.3194 -0.0099 32 1 3.1117 5.6338 1.8687 33 1 4.6926 4.8308 2.0249 34 1 4.6009 6.5073 1.4345 35 1 5.7822 4.0358 -0.5632 36 1 8.0008 5.5080 -0.9804 37 1 7.2755 5.0802 -2.5486 38 1 7.0369 7.4866 -3.0956 39 1 7.7623 7.9150 -1.5276 40 1 9.5353 10.0561 -3.9430 41 1 5.1399 2.5811 -0.0002 42 1 6.0703 -0.6849 0.0008 43 1 5.9066 0.8478 -0.8891 44 1 5.9060 0.8480 0.8909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291599260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:20 Heat of formation + Delta-G solvation = -160.101127 kcal Electronic energy + Delta-G solvation = -27443.688898 eV Core-core repulsion = 23275.454264 eV Total energy + Delta-G solvation = -4168.234634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.00307 -41.80399 -40.80858 -39.51392 -38.44852 -36.15462 -35.52046 -33.29584 -32.10548 -31.21882 -30.40956 -28.10277 -28.00884 -27.71897 -25.00872 -23.87816 -23.32329 -21.98028 -21.26297 -19.76233 -18.90876 -18.63865 -18.43558 -17.61429 -17.28211 -16.97873 -16.73281 -16.54634 -16.46557 -16.33818 -16.17119 -15.75083 -15.53838 -15.41044 -14.92611 -14.74696 -14.20449 -14.18570 -13.75097 -13.71031 -13.36657 -13.30694 -13.21229 -12.89527 -12.76665 -12.55577 -12.49713 -12.43765 -12.10042 -12.00518 -11.89019 -11.71303 -11.62305 -11.30861 -10.75998 -10.55099 -10.23814 -9.92822 -8.87587 -8.16407 -6.30531 -0.05554 0.01593 1.43088 1.47579 1.55227 1.69857 2.10121 2.17662 2.25002 2.34005 2.45227 3.11959 3.16578 3.29594 3.51132 3.88963 3.94767 4.00624 4.17838 4.22147 4.33876 4.36182 4.39933 4.46060 4.46576 4.50735 4.57347 4.58356 4.70395 4.74134 4.82138 4.83775 4.91573 4.98877 5.12302 5.15223 5.42157 5.44585 5.52631 5.64915 5.87018 5.97543 6.18749 6.44514 6.53792 6.87999 7.31025 7.39780 8.96028 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.002580 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.822601 B =10848.837735 C =11879.808258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.120 3.880 4 C -0.197 4.197 5 C 0.097 3.903 6 F -0.141 7.141 7 C -0.121 4.121 8 C 0.187 3.813 9 H 0.071 0.929 10 C -0.151 4.151 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.584 6.584 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.290 1.290 23 H -0.261 1.261 24 C -0.137 4.137 25 C 0.093 3.907 26 O -0.319 6.319 27 C 0.009 3.991 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.172 0.828 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.413 0.587 36 H 0.109 0.891 37 H 0.106 0.894 38 H -0.019 1.019 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.165 0.835 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 -24.595 11.145 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.073 3.927 4 C -0.217 4.217 5 C 0.077 3.923 6 F -0.120 7.120 7 C -0.123 4.123 8 C 0.083 3.917 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.370 5.370 12 C 0.303 3.697 13 O -0.463 6.463 14 C -0.158 4.158 15 C 0.004 3.996 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.215 1.215 23 H -0.186 1.186 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.233 6.233 27 C -0.085 4.085 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.189 0.811 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.252 0.748 36 H 0.127 0.873 37 H 0.124 0.876 38 H -0.001 1.001 39 H 0.001 0.999 40 H 0.071 0.929 41 H 0.182 0.818 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.667 -24.032 11.076 30.752 hybrid contribution 0.535 0.908 -0.504 1.168 sum -15.132 -23.125 10.572 29.589 Atomic orbital electron populations 1.23460 0.76116 1.06037 1.02546 1.86195 1.23554 1.24905 1.88423 1.18062 0.89244 0.85275 1.00069 1.21075 1.02205 0.89180 1.09210 1.17119 0.88104 0.82148 1.04911 1.91496 1.77024 1.49414 1.94022 1.19551 0.91953 0.95281 1.05521 1.19485 0.83522 0.93053 0.95690 0.91114 1.22088 1.03139 1.01349 0.94324 1.46048 1.17799 1.13122 1.60018 1.21401 0.88650 0.83224 0.76432 1.90668 1.66928 1.29465 1.59192 1.21656 0.91421 1.00984 1.01757 1.18688 0.94896 0.91866 0.94148 1.21688 1.02014 0.96808 1.37481 0.90410 1.26149 1.02830 0.94862 0.96720 1.70175 1.40228 1.01642 1.45795 0.85377 0.78576 0.77304 0.79002 1.18681 1.21539 1.18581 1.20746 1.01332 0.88960 1.04529 1.18306 0.88648 0.86437 1.01966 1.86181 1.20773 1.27593 1.88713 1.23483 0.76356 1.05956 1.02690 0.85972 0.91545 0.91232 0.81099 0.90662 0.90183 0.93499 0.74817 0.87266 0.87603 1.00100 0.99896 0.92914 0.81823 0.86142 0.91398 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.62 10.28 -79.55 -0.82 -6.43 16 3 C 0.12 2.28 6.70 22.56 0.15 2.43 16 4 C -0.20 -3.48 9.01 22.39 0.20 -3.28 16 5 C 0.10 2.12 7.24 22.37 0.16 2.28 16 6 F -0.14 -3.47 16.55 44.97 0.74 -2.73 16 7 C -0.12 -2.65 5.06 -19.81 -0.10 -2.75 16 8 C 0.19 5.00 2.55 44.24 0.11 5.11 16 9 H 0.07 2.35 7.22 -2.39 -0.02 2.33 16 10 C -0.15 -3.67 9.47 71.98 0.68 -2.99 16 11 N -0.71 -19.27 5.00 -446.09 -2.23 -21.50 16 12 C 0.51 19.70 7.79 87.66 0.68 20.38 16 13 O -0.58 -28.74 15.64 -3.03 -0.05 -28.79 16 14 C -0.12 -4.62 5.64 29.85 0.17 -4.46 16 15 C 0.04 2.31 4.26 29.85 0.13 2.43 16 16 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 19 N -0.94 -59.72 13.29 21.44 0.28 -59.43 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.14 -2.44 8.22 22.34 0.18 -2.25 16 25 C 0.09 1.78 6.70 22.56 0.15 1.93 16 26 O -0.32 -5.82 10.28 -80.07 -0.82 -6.64 16 27 C 0.01 0.09 9.81 113.37 1.11 1.21 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 30 H 0.07 0.44 7.67 -2.38 -0.02 0.42 16 31 H 0.17 2.09 6.30 -2.91 -0.02 2.07 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.41 7.81 6.20 -92.71 -0.57 7.23 16 36 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 38 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 39 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 40 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 41 H 0.16 2.10 4.30 -2.91 -0.01 2.09 16 42 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.58 7.66 -2.38 -0.02 0.57 16 44 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 Total: -1.00 -81.59 372.66 5.04 -76.55 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.46 Total: 11.97 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.44 Total: -9.05 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -1.94 Total: -80.93 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.69 Total: -41.87 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.74 Total: -2.73 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -81.59 5.04 -76.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291599260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.548 kcal (2) G-P(sol) polarization free energy of solvation -81.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds