Wall clock time and date at job start Tue Mar 31 2020 14:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47520 * 2 1 4 4 C 1.50701 * 109.46957 * 239.99501 * 2 1 3 5 5 H 1.08000 * 120.00214 * 240.00095 * 4 2 1 6 6 C 1.37873 * 119.99809 * 60.00660 * 4 2 1 7 7 N 1.31512 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99998 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47334 * 120.00047 * 8 6 4 11 11 H 1.48502 * 109.47317 * 240.00231 * 8 6 4 12 12 C 1.53003 * 109.46814 * 120.00107 * 2 1 3 13 13 S 1.81402 * 109.47069 * 299.99926 * 12 2 1 14 14 O 1.42097 * 110.54322 * 68.37221 * 13 12 2 15 15 O 1.42101 * 110.54305 * 291.62547 * 13 12 2 16 16 N 1.65594 * 104.45001 * 179.97438 * 13 12 2 17 17 C 1.46509 * 119.99817 * 65.00319 * 16 13 12 18 18 C 1.52997 * 109.47027 * 165.00080 * 17 16 13 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.08994 * 109.47601 * 300.00364 * 1 2 3 27 27 H 1.09003 * 109.46980 * 60.00206 * 1 2 3 28 28 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47383 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46826 * 299.99888 * 3 2 1 31 31 H 1.09007 * 109.47092 * 59.99589 * 3 2 1 32 32 H 0.97005 * 120.00180 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47310 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47603 * 59.99536 * 12 2 1 35 35 H 0.96996 * 120.00138 * 244.99475 * 16 13 12 36 36 H 1.08992 * 109.47597 * 44.99786 * 17 16 13 37 37 H 1.08999 * 109.46361 * 284.99489 * 17 16 13 38 38 H 1.08995 * 109.47671 * 59.99445 * 18 17 16 39 39 H 1.09004 * 109.46984 * 299.99461 * 18 17 16 40 40 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 41 41 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1483 -2.2859 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0278 -0.0182 2.8543 15 8 2.0479 1.4100 2.8544 16 7 2.0527 -0.7408 3.9936 17 6 3.5012 -0.7982 4.2061 18 6 3.7899 -1.3347 5.6095 19 6 5.3025 -1.3952 5.8312 20 6 5.5870 -1.9231 7.2138 21 6 5.7358 -3.2822 7.4176 22 6 5.9972 -3.7663 8.6858 23 6 6.1104 -2.8913 9.7499 24 6 5.9563 -1.5327 9.5470 25 6 5.6995 -1.0481 8.2781 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7091 1.1614 -3.4845 33 1 3.1299 -0.7209 1.2496 34 1 1.6765 -1.7489 1.2494 35 1 1.4555 -1.2151 4.5930 36 1 3.9231 0.2017 4.1054 37 1 3.9511 -1.4588 3.4649 38 1 3.3680 -2.3346 5.7102 39 1 3.3399 -0.6741 6.3507 40 1 5.7249 -0.3953 5.7304 41 1 5.7522 -2.0560 5.0901 42 1 5.6478 -3.9658 6.5861 43 1 6.1131 -4.8282 8.8451 44 1 6.3151 -3.2696 10.7406 45 1 6.0404 -0.8494 10.3792 46 1 5.5839 0.0138 8.1187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295272074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:28 Heat of formation + Delta-G solvation = -86.858417 kcal Electronic energy + Delta-G solvation = -25233.040506 eV Core-core repulsion = 21634.195090 eV Total energy + Delta-G solvation = -3598.845416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.15392 -38.13028 -38.09848 -37.28992 -36.83870 -34.33313 -33.61672 -31.70995 -30.67663 -28.29421 -27.67346 -27.24388 -26.40371 -23.40394 -23.12481 -21.77484 -21.30466 -20.15474 -18.69610 -17.85193 -17.72601 -17.22558 -16.96199 -16.59701 -16.46607 -16.09844 -15.61710 -15.47925 -14.98553 -14.66123 -14.41094 -14.39153 -14.21512 -13.93781 -13.81344 -13.53737 -13.47649 -13.07633 -12.97605 -12.89770 -12.74469 -12.54207 -12.49100 -12.44623 -12.17437 -12.10730 -12.03517 -11.91345 -11.64983 -11.58585 -11.54874 -11.33308 -10.66007 -10.41147 -10.26400 -9.76859 -9.54084 -8.01960 -6.20350 -0.57243 0.50148 0.55255 1.43573 1.46711 1.56087 1.95320 2.44967 2.88391 2.93411 3.20427 3.35761 3.76682 3.97396 3.99526 4.18350 4.19075 4.21370 4.23471 4.33279 4.38008 4.56692 4.61759 4.66234 4.73506 4.79450 4.83310 4.88538 4.88995 5.01265 5.04452 5.11141 5.16191 5.21253 5.27929 5.39852 5.41695 5.52585 5.63587 5.66256 5.68281 5.79783 5.99146 6.12973 6.16854 6.19017 6.35581 6.84903 7.47914 8.98012 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.002439 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.558334 B =11479.353836 C =12234.272298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.067 3.933 3 C -0.160 4.160 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.585 4.585 13 S 2.614 3.386 14 O -0.996 6.996 15 O -0.992 6.992 16 N -1.115 6.115 17 C 0.102 3.898 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.133 4.133 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.422 0.578 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.826 -8.677 21.532 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 C -0.218 4.218 4 C -0.553 4.553 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.718 4.718 13 S 2.711 3.289 14 O -0.986 6.986 15 O -0.982 6.982 16 N -0.876 5.876 17 C -0.024 4.024 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.151 4.151 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.258 0.742 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.327 -7.678 21.390 24.962 hybrid contribution 0.111 -0.792 -1.052 1.322 sum 10.438 -8.470 20.338 24.378 Atomic orbital electron populations 1.22211 0.97873 1.00471 1.01296 1.17938 0.92279 0.92216 0.91038 1.22203 0.99891 0.98350 1.01313 1.21322 1.31432 1.12181 0.90321 0.91774 1.25696 0.95276 0.95698 1.01744 1.69957 1.37321 1.23738 1.23724 0.85554 0.77986 0.78728 0.79622 1.18860 1.21111 1.21036 1.30444 1.12679 1.13354 1.15311 1.04676 0.73413 0.74898 0.75896 1.93503 1.31678 1.87102 1.86306 1.93499 1.78473 1.40196 1.86032 1.55365 1.15499 1.70726 1.46046 1.21612 0.78673 1.02551 0.99525 1.21672 0.96159 1.02391 0.94730 1.20588 0.95371 1.02647 0.93258 1.20048 0.99281 0.93874 0.95815 1.21338 1.00274 0.95108 0.97995 1.21451 0.99611 1.00720 0.92912 1.21450 1.00496 0.93642 0.99879 1.21430 0.99698 0.96218 0.97433 1.21329 1.00580 1.00242 0.92955 0.94907 0.91152 0.94124 0.93964 0.91204 0.94845 0.92996 0.84308 0.84428 0.74175 0.90810 0.89708 0.90136 0.91394 0.90166 0.89330 0.84857 0.84538 0.84571 0.84749 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 2 C 0.07 3.21 0.52 -52.93 -0.03 3.18 16 3 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 4 C -0.51 -26.37 8.01 25.60 0.21 -26.16 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.79 5.15 84.65 0.44 1.23 16 7 N -0.91 -50.24 9.35 21.45 0.20 -50.04 16 8 Si 0.95 41.88 29.54 68.60 2.03 43.90 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C -0.59 -21.35 5.01 71.98 0.36 -20.99 16 13 S 2.61 91.96 4.49 -56.49 -0.25 91.71 16 14 O -1.00 -40.84 15.70 -127.65 -2.00 -42.84 16 15 O -0.99 -40.41 15.12 -127.65 -1.93 -42.34 16 16 N -1.12 -26.88 5.89 -187.49 -1.10 -27.99 16 17 C 0.10 1.98 6.13 86.38 0.53 2.51 16 18 C -0.11 -1.68 5.34 30.59 0.16 -1.51 16 19 C -0.08 -1.10 5.34 29.85 0.16 -0.94 16 20 C -0.09 -1.40 5.13 -19.86 -0.10 -1.50 16 21 C -0.13 -1.88 9.70 22.27 0.22 -1.67 16 22 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 23 C -0.14 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 26 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 27 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 31 H 0.03 1.57 5.46 -2.38 -0.01 1.55 16 32 H 0.26 13.79 8.31 -92.70 -0.77 13.02 16 33 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 34 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 35 H 0.42 8.48 8.62 -96.75 -0.83 7.65 16 36 H 0.07 1.56 7.70 -2.39 -0.02 1.54 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 41 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 42 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 46 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -68.42 376.02 1.01 -67.41 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.13 Total: 27.38 kcal Atomic # 6 Polarization: -71.14 SS G_CDS: 3.95 Total: -67.19 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -0.90 Total: -78.03 kcal Atomic # 8 Polarization: -81.24 SS G_CDS: -3.93 Total: -85.18 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 91.96 SS G_CDS: -0.25 Total: 91.71 kcal Total: -68.42 1.01 -67.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295272074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.445 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds