Wall clock time and date at job start Tue Mar 31 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00001 * 2 1 4 4 C 1.52995 * 109.47070 * 274.99921 * 3 2 1 5 5 C 1.50707 * 109.47301 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99792 * 90.00016 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.97953 * 5 4 3 11 11 S 1.65603 * 120.00272 * 179.97438 * 2 1 3 12 12 O 1.42107 * 104.27398 * 26.07601 * 11 2 1 13 13 O 1.42096 * 104.27583 * 153.93131 * 11 2 1 14 14 C 1.81394 * 104.45314 * 270.00435 * 11 2 1 15 15 C 1.52995 * 109.47293 * 179.97438 * 14 11 2 16 16 C 1.52997 * 109.47365 * 299.99852 * 15 14 11 17 17 C 1.53004 * 109.47270 * 59.99956 * 15 14 11 18 18 C 1.50707 * 109.47170 * 179.97438 * 15 14 11 19 19 H 1.07997 * 120.00134 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99703 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00176 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99682 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47125 * 90.00194 * 22 20 18 24 24 H 1.48505 * 109.47210 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47090 * 330.00183 * 22 20 18 26 26 H 1.09001 * 109.46888 * 90.00838 * 1 2 3 27 27 H 1.09003 * 109.46799 * 209.99609 * 1 2 3 28 28 H 1.08994 * 109.47135 * 330.00078 * 1 2 3 29 29 H 1.08995 * 109.47623 * 154.99691 * 3 2 1 30 30 H 1.09004 * 109.47046 * 34.99698 * 3 2 1 31 31 H 1.09005 * 109.47610 * 60.00011 * 4 3 2 32 32 H 1.09000 * 109.47256 * 299.99352 * 4 3 2 33 33 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 37 37 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 38 38 H 1.09006 * 109.47130 * 300.00007 * 14 11 2 39 39 H 1.09000 * 109.47118 * 59.99620 * 14 11 2 40 40 H 1.09003 * 109.47115 * 59.99626 * 16 15 14 41 41 H 1.09001 * 109.47663 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.46901 * 300.00183 * 16 15 14 43 43 H 1.09006 * 109.46914 * 60.00031 * 17 15 14 44 44 H 1.08996 * 109.47582 * 180.02562 * 17 15 14 45 45 H 1.09003 * 109.46661 * 300.00038 * 17 15 14 46 46 H 0.97001 * 119.99979 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4370 5 6 3.0966 3.0787 -1.4370 6 6 4.4750 3.0815 -1.5411 7 6 5.1656 4.2789 -1.5417 8 6 4.4778 5.4736 -1.4386 9 6 3.0998 5.4706 -1.3291 10 6 2.4088 4.2733 -1.3333 11 16 2.2931 -1.4341 0.0006 12 8 1.3970 -2.3564 -0.6043 13 8 3.5395 -1.1193 -0.6047 14 6 2.5193 -1.8255 1.7573 15 6 3.2809 -3.1456 1.8918 16 6 2.4842 -4.2649 1.2186 17 6 4.6484 -3.0165 1.2178 18 6 3.4694 -3.4704 3.3513 19 1 3.0849 -2.8019 4.1074 20 6 4.1328 -4.6211 3.7214 21 7 4.6014 -5.4349 2.8007 22 14 4.3671 -5.0233 5.5304 23 1 3.2160 -5.8288 6.0116 24 1 5.6216 -5.7982 5.7068 25 1 4.4499 -3.7628 6.3111 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 3.1857 1.1178 0.4343 30 1 1.6500 2.0043 0.5894 31 1 1.3553 1.9243 -1.8714 32 1 2.8911 1.0377 -2.0264 33 1 5.0124 2.1481 -1.6221 34 1 6.2426 4.2811 -1.6226 35 1 5.0174 6.4091 -1.4395 36 1 2.5628 6.4037 -1.2442 37 1 1.3319 4.2711 -1.2526 38 1 3.0866 -1.0278 2.2372 39 1 1.5451 -1.9179 2.2374 40 1 2.3481 -4.0298 0.1629 41 1 3.0269 -5.2053 1.3139 42 1 1.5100 -4.3569 1.6987 43 1 5.2160 -2.2191 1.6976 44 1 5.1908 -3.9571 1.3132 45 1 4.5124 -2.7814 0.1622 46 1 5.0678 -6.2446 3.0611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296760923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:39 Heat of formation + Delta-G solvation = -70.186651 kcal Electronic energy + Delta-G solvation = -26227.729436 eV Core-core repulsion = 22629.606962 eV Total energy + Delta-G solvation = -3598.122474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19117 -38.18393 -38.14648 -37.63778 -36.81731 -33.81908 -33.64213 -31.71501 -29.69291 -28.41344 -27.71035 -27.26751 -26.84084 -24.20266 -23.39859 -21.82152 -21.31615 -19.71787 -18.80137 -17.89336 -17.68111 -17.28388 -16.94575 -16.68060 -16.17774 -16.03008 -15.54467 -15.23925 -14.88935 -14.69316 -14.46295 -14.43497 -14.15790 -13.89193 -13.78954 -13.76824 -13.58641 -13.15506 -12.99958 -12.91562 -12.88498 -12.78999 -12.57092 -12.46911 -12.18207 -12.16731 -12.03814 -11.97146 -11.81989 -11.64023 -11.58409 -11.37471 -10.65669 -10.42900 -10.10749 -9.77111 -9.47769 -8.04214 -6.23287 -0.64252 0.48335 0.55036 1.43289 1.44938 1.53805 1.80739 2.43342 2.88403 2.94077 3.17431 3.24693 3.64929 3.92469 4.01046 4.08450 4.14519 4.21081 4.30777 4.31827 4.37508 4.57727 4.59682 4.64402 4.69933 4.72160 4.82545 4.84720 4.88044 4.96065 4.99740 5.03416 5.06865 5.13562 5.23570 5.26837 5.36767 5.48345 5.60979 5.63047 5.67717 5.69205 5.79544 5.95502 6.09905 6.18235 6.32748 6.81492 7.45172 8.95639 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.003199 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.361209 B = 8751.258852 C = 9422.606840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.004 6.004 3 C 0.127 3.873 4 C -0.099 4.099 5 C -0.090 4.090 6 C -0.138 4.138 7 C -0.129 4.129 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.120 4.120 11 S 2.607 3.393 12 O -0.988 6.988 13 O -0.984 6.984 14 C -0.588 4.588 15 C 0.070 3.930 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.520 4.520 19 H 0.063 0.937 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.267 1.267 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 21.328 -5.889 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.842 5.842 3 C 0.002 3.998 4 C -0.139 4.139 5 C -0.091 4.091 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.141 4.141 10 C -0.138 4.138 11 S 2.704 3.296 12 O -0.979 6.979 13 O -0.974 6.974 14 C -0.720 4.720 15 C 0.068 3.932 16 C -0.218 4.218 17 C -0.216 4.216 18 C -0.559 4.559 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.275 20.707 -6.701 22.651 hybrid contribution 0.457 -0.757 1.395 1.652 sum -5.817 19.950 -5.305 21.447 Atomic orbital electron populations 1.21749 0.76835 1.04554 1.03041 1.57423 1.16121 1.20603 1.90078 1.21440 0.96781 0.84782 0.96808 1.21024 1.00984 0.93934 0.97913 1.19865 0.93746 0.95086 1.00381 1.21317 0.94557 0.98725 1.01009 1.21398 1.00777 0.92530 1.00034 1.21479 0.95032 0.98446 0.99915 1.21490 0.94559 0.98732 0.99346 1.21322 1.00943 0.91500 1.00034 1.05059 0.73118 0.72853 0.78521 1.93494 1.65574 1.63236 1.75562 1.93495 1.45128 1.83383 1.75429 1.30514 1.10374 1.08223 1.22924 1.17914 0.90917 0.87594 0.96824 1.22208 0.99418 1.03159 0.96987 1.22192 0.99949 1.02478 0.97006 1.21312 1.36456 1.06924 0.91174 0.91924 1.25692 0.95113 0.96121 1.01279 1.69945 1.38094 1.12806 1.33825 0.85603 0.77378 0.78308 0.80625 1.20285 1.21209 1.19132 0.92110 0.91274 0.87542 0.91051 0.87064 0.88967 0.92532 0.86983 0.84982 0.84054 0.83620 0.83958 0.84927 0.84726 0.94969 0.91030 0.94086 0.94214 0.91091 0.94897 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 10.24 127.77 1.31 2.93 16 2 N -1.00 -26.09 3.12 -539.15 -1.68 -27.77 16 3 C 0.13 2.84 5.26 86.38 0.45 3.29 16 4 C -0.10 -2.23 5.67 29.85 0.17 -2.06 16 5 C -0.09 -1.91 5.13 -19.86 -0.10 -2.01 16 6 C -0.14 -3.19 9.70 22.27 0.22 -2.98 16 7 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 8 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 9 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 10 C -0.12 -1.99 9.70 22.27 0.22 -1.77 16 11 S 2.61 95.81 4.36 -56.49 -0.25 95.56 16 12 O -0.99 -41.31 14.71 -127.65 -1.88 -43.19 16 13 O -0.98 -40.82 14.37 -127.65 -1.83 -42.65 16 14 C -0.59 -22.58 5.12 71.98 0.37 -22.21 16 15 C 0.07 3.39 0.52 -52.93 -0.03 3.37 16 16 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 17 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 18 C -0.52 -27.30 8.01 25.60 0.21 -27.09 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.02 0.93 5.15 84.66 0.44 1.36 16 21 N -0.91 -50.66 9.35 21.45 0.20 -50.46 16 22 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 28 H 0.11 1.28 7.94 -2.39 -0.02 1.26 16 29 H 0.07 1.78 7.61 -2.39 -0.02 1.76 16 30 H 0.11 1.73 7.96 -2.38 -0.02 1.71 16 31 H 0.09 1.69 8.09 -2.38 -0.02 1.67 16 32 H 0.06 1.57 7.85 -2.39 -0.02 1.55 16 33 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 40 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 41 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 42 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 45 H 0.03 1.58 5.47 -2.39 -0.01 1.56 16 46 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -68.53 374.31 2.57 -65.97 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.95 Total: 26.08 kcal Atomic # 6 Polarization: -72.84 SS G_CDS: 5.03 Total: -67.81 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.48 Total: -78.22 kcal Atomic # 8 Polarization: -82.13 SS G_CDS: -3.71 Total: -85.84 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 95.81 SS G_CDS: -0.25 Total: 95.56 kcal Total: -68.53 2.57 -65.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296760923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.221 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds