Wall clock time and date at job start Tue Mar 31 2020 14:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46945 * 2 1 4 4 N 1.46497 * 109.47062 * 120.00110 * 2 1 3 5 5 C 1.39668 * 120.00166 * 305.18659 * 4 2 1 6 6 C 1.38911 * 120.07557 * 102.41505 * 5 4 2 7 7 C 1.38106 * 119.92992 * 179.97438 * 6 5 4 8 8 C 1.38289 * 120.07194 * 0.02562 * 7 6 5 9 9 C 1.38290 * 120.14539 * 359.97438 * 8 7 6 10 10 C 1.38100 * 120.07895 * 359.97438 * 9 8 7 11 11 S 1.65605 * 119.99880 * 125.19066 * 4 2 1 12 12 O 1.42099 * 104.27851 * 31.57005 * 11 4 2 13 13 O 1.42094 * 104.27594 * 159.43188 * 11 4 2 14 14 C 1.81402 * 104.44614 * 275.50068 * 11 4 2 15 15 C 1.53004 * 109.47018 * 180.02562 * 14 11 4 16 16 C 1.52999 * 109.46805 * 299.99841 * 15 14 11 17 17 C 1.52992 * 109.47318 * 59.99808 * 15 14 11 18 18 C 1.50699 * 109.47253 * 180.02562 * 15 14 11 19 19 H 1.08003 * 120.00296 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00240 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99781 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00191 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47602 * 59.99750 * 22 20 18 24 24 H 1.48495 * 109.47396 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46933 * 299.99927 * 22 20 18 26 26 H 1.09005 * 109.47175 * 295.25989 * 1 2 3 27 27 H 1.09000 * 109.47291 * 55.25916 * 1 2 3 28 28 H 1.09007 * 109.47254 * 175.26324 * 1 2 3 29 29 H 1.08997 * 109.46724 * 240.00313 * 2 1 3 30 30 H 1.09002 * 109.46844 * 175.85978 * 3 2 1 31 31 H 1.09001 * 109.47225 * 295.86030 * 3 2 1 32 32 H 1.08998 * 109.47192 * 55.86032 * 3 2 1 33 33 H 1.08004 * 120.04070 * 359.70639 * 6 5 4 34 34 H 1.07995 * 119.96951 * 180.02562 * 7 6 5 35 35 H 1.07988 * 119.92892 * 179.97438 * 8 7 6 36 36 H 1.08007 * 119.95715 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.04105 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47243 * 299.99470 * 14 11 4 39 39 H 1.08999 * 109.47179 * 60.00047 * 14 11 4 40 40 H 1.08997 * 109.47379 * 59.99911 * 16 15 14 41 41 H 1.09000 * 109.47067 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.47210 * 300.00099 * 16 15 14 43 43 H 1.09004 * 109.47261 * 60.00156 * 17 15 14 44 44 H 1.09000 * 109.47179 * 180.02562 * 17 15 14 45 45 H 1.08999 * 109.47361 * 300.00138 * 17 15 14 46 46 H 0.96998 * 120.00301 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5940 -0.2799 2.4618 6 6 0.6227 -1.0056 3.1398 7 6 0.2057 -0.5970 4.3914 8 6 0.7536 0.5334 4.9696 9 6 1.7207 1.2580 4.2974 10 6 2.1430 0.8545 3.0460 11 16 3.0736 -1.9582 1.0475 12 8 3.8324 -1.6483 -0.1132 13 8 3.6915 -2.0512 2.3237 14 6 2.0118 -3.3982 0.7481 15 6 2.8800 -4.6484 0.5922 16 6 3.8333 -4.4631 -0.5900 17 6 3.6903 -4.8694 1.8710 18 6 1.9980 -5.8446 0.3428 19 1 0.9255 -5.7252 0.2994 20 6 2.5602 -7.0915 0.1690 21 7 3.8663 -7.2370 0.2214 22 14 1.4671 -8.5741 -0.1408 23 1 0.6811 -8.3589 -1.3822 24 1 2.3096 -9.7875 -0.2920 25 1 0.5412 -8.7548 1.0061 26 1 -0.3634 0.4385 0.9294 27 1 -0.3634 0.5856 -0.8445 28 1 -0.3634 -1.0242 -0.0849 29 1 1.8933 -0.5138 -0.8900 30 1 3.1274 1.4433 0.0742 31 1 1.7384 1.9344 -0.9248 32 1 1.6173 1.9773 0.8505 33 1 0.1909 -1.8858 2.6869 34 1 -0.5491 -1.1609 4.9193 35 1 0.4255 0.8510 5.9482 36 1 2.1463 2.1407 4.7517 37 1 2.8980 1.4211 2.5214 38 1 1.3329 -3.5306 1.5905 39 1 1.4342 -3.2407 -0.1628 40 1 4.4713 -3.5978 -0.4101 41 1 4.4515 -5.3538 -0.7014 42 1 3.2560 -4.3056 -1.5011 43 1 3.0111 -5.0014 2.7133 44 1 4.3091 -5.7597 1.7598 45 1 4.3283 -4.0041 2.0510 46 1 4.2619 -8.1142 0.0996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331312290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:02 Heat of formation + Delta-G solvation = -45.980617 kcal Electronic energy + Delta-G solvation = -27471.981627 eV Core-core repulsion = 23874.908806 eV Total energy + Delta-G solvation = -3597.072821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.68335 -37.01230 -36.43024 -36.27458 -35.30104 -32.12424 -31.68452 -30.96611 -28.86987 -27.28603 -26.62438 -25.73145 -25.23728 -22.80139 -22.53373 -20.99960 -19.47127 -18.91204 -17.51290 -16.75644 -16.19468 -15.96419 -15.63336 -15.05172 -14.85711 -14.78028 -14.19109 -14.06711 -13.50967 -13.48637 -13.18589 -13.02724 -12.73543 -12.64641 -12.51479 -12.21292 -12.09181 -11.66067 -11.60723 -11.57538 -11.46125 -11.11801 -11.07847 -11.04172 -10.93931 -10.82543 -10.68495 -10.40942 -10.28598 -10.11380 -9.70712 -9.66693 -9.20578 -8.93899 -8.68552 -8.59391 -8.40959 -6.04280 -4.16537 0.71286 1.31557 1.39204 2.99099 3.26174 3.31841 3.33224 3.71544 4.30534 4.38374 4.59867 4.76848 4.90854 4.93788 5.04133 5.06527 5.13458 5.20638 5.28042 5.39583 5.45788 5.54326 5.57281 5.69938 5.74559 5.75183 5.78782 5.98810 6.03717 6.18795 6.24985 6.33490 6.36112 6.48361 6.53412 6.68193 6.68858 6.78054 6.89140 7.02060 7.17216 7.29986 7.48869 7.66424 7.96420 8.07831 8.31411 8.81525 9.48804 10.97085 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.004347 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.589501 B = 6439.853610 C = 6854.031888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 C -0.162 4.162 4 N -0.962 5.962 5 C 0.163 3.837 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.112 4.112 11 S 2.584 3.416 12 O -0.958 6.958 13 O -0.951 6.951 14 C -0.580 4.580 15 C 0.083 3.917 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.026 0.974 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.027 0.973 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 16.568 3.986 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.221 4.221 4 N -0.792 5.792 5 C 0.070 3.930 6 C -0.145 4.145 7 C -0.127 4.127 8 C -0.141 4.141 9 C -0.132 4.132 10 C -0.132 4.132 11 S 2.685 3.315 12 O -0.948 6.948 13 O -0.941 6.941 14 C -0.714 4.714 15 C 0.081 3.919 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.045 0.955 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.451 16.524 3.975 18.178 hybrid contribution -1.266 -1.135 -0.262 1.720 sum -7.717 15.389 3.713 17.611 Atomic orbital electron populations 1.22193 0.94712 1.02758 1.02570 1.20937 0.94678 0.94245 0.86425 1.22224 1.01972 0.95663 1.02246 1.55917 1.64850 1.49653 1.08733 1.17146 0.95359 0.95459 0.85038 1.21498 0.96448 1.00576 0.95952 1.21019 1.00081 0.96741 0.94818 1.21161 0.97398 0.95692 0.99869 1.21035 0.97570 1.00060 0.94534 1.21416 0.99476 0.96846 0.95493 1.06151 0.75608 0.75172 0.74535 1.93541 1.67082 1.83042 1.51132 1.93556 1.73095 1.85933 1.41508 1.30591 1.14450 1.16349 1.09967 1.17929 0.91734 0.88794 0.93468 1.22278 0.99859 1.01973 0.98027 1.22270 1.00201 1.02747 0.96881 1.20886 0.92551 0.91057 1.49673 0.92358 1.24935 0.95095 0.98762 0.94888 1.69790 1.09407 1.23611 1.49342 0.86592 0.80360 0.81890 0.78759 1.20262 1.21154 1.20268 0.91871 0.91434 0.91882 0.88095 0.91919 0.91522 0.91997 0.85537 0.85635 0.86012 0.85868 0.85748 0.86422 0.86410 0.95481 0.88572 0.94452 0.94443 0.88612 0.95459 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.14 37.16 0.34 -1.35 16 2 C 0.14 1.78 3.10 -67.93 -0.21 1.57 16 3 C -0.16 -1.76 8.38 37.15 0.31 -1.45 16 4 N -0.96 -14.57 2.66 -52.17 -0.14 -14.71 16 5 C 0.16 2.34 3.20 -83.79 -0.27 2.07 16 6 C -0.12 -1.65 9.74 -39.38 -0.38 -2.04 16 7 C -0.11 -1.23 10.04 -39.61 -0.40 -1.62 16 8 C -0.12 -1.28 10.04 -39.54 -0.40 -1.68 16 9 C -0.11 -1.24 10.04 -39.61 -0.40 -1.64 16 10 C -0.11 -1.45 8.44 -39.38 -0.33 -1.79 16 11 S 2.58 50.27 4.38 -107.50 -0.47 49.80 16 12 O -0.96 -20.41 14.47 -57.54 -0.83 -21.24 16 13 O -0.95 -20.98 14.76 -57.54 -0.85 -21.83 16 14 C -0.58 -11.54 5.12 37.16 0.19 -11.35 16 15 C 0.08 2.03 0.52 -155.66 -0.08 1.95 16 16 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 17 C -0.16 -4.09 7.78 37.15 0.29 -3.80 16 18 C -0.50 -13.17 8.01 -34.44 -0.28 -13.44 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 22 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.32 7.16 -51.93 -0.37 0.95 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 6.65 -51.93 -0.35 0.28 16 33 H 0.13 1.58 7.62 -52.48 -0.40 1.18 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.51 7.22 -52.49 -0.38 1.13 16 38 H 0.12 2.14 7.70 -51.93 -0.40 1.74 16 39 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 40 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 41 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 45 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -31.55 366.81 -9.92 -41.47 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.24 Total: 5.73 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: -1.42 Total: -36.70 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.38 Total: -38.33 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.68 Total: -43.07 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.47 Total: 49.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.55 -9.92 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331312290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.507 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds