Wall clock time and date at job start Tue Mar 31 2020 16:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00347 * 2 1 4 4 C 1.38756 * 120.05303 * 0.02640 * 3 2 1 5 5 C 1.38119 * 119.94406 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05769 * 359.74504 * 5 4 3 7 7 C 1.38243 * 120.10633 * 0.50907 * 6 5 4 8 8 C 1.50700 * 119.96902 * 179.76729 * 7 6 5 9 9 H 1.09000 * 109.46746 * 159.72271 * 8 7 6 10 10 C 1.52998 * 109.47166 * 279.72249 * 8 7 6 11 11 N 1.46499 * 109.47185 * 39.72568 * 8 7 6 12 12 C 1.34771 * 120.00158 * 154.99954 * 11 8 7 13 13 O 1.21555 * 120.00012 * 359.97438 * 12 11 8 14 14 C 1.47885 * 120.00361 * 179.71994 * 12 11 8 15 15 C 1.39917 * 120.02147 * 359.73121 * 14 12 11 16 16 C 1.38329 * 120.35889 * 179.71388 * 15 14 12 17 17 C 1.37753 * 120.41010 * 0.55751 * 16 15 14 18 18 C 1.40751 * 120.03948 * 359.72380 * 17 16 15 19 19 C 1.41440 * 120.17831 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99985 * 24.43045 * 19 18 17 21 21 C 1.39932 * 120.00056 * 204.43409 * 19 18 17 22 22 N 1.30832 * 119.99693 * 17.87713 * 21 19 18 23 23 Si 1.86793 * 120.00418 * 197.87745 * 21 19 18 24 24 H 1.48508 * 109.47155 * 59.99832 * 23 21 19 25 25 H 1.48499 * 109.47720 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47057 * 300.00332 * 23 21 19 27 27 C 1.38996 * 120.02749 * 179.97438 * 14 12 11 28 28 C 1.38168 * 120.05928 * 359.48983 * 7 6 5 29 29 H 1.09007 * 109.47215 * 60.00042 * 1 2 3 30 30 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46896 * 300.00032 * 1 2 3 32 32 H 1.08005 * 120.02655 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.97232 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.94427 * 180.27545 * 6 5 4 35 35 H 1.08996 * 109.47125 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47401 * 300.00324 * 10 8 7 37 37 H 1.08996 * 109.46876 * 60.00104 * 10 8 7 38 38 H 0.96998 * 119.99940 * 334.99653 * 11 8 7 39 39 H 1.07999 * 119.82459 * 359.96880 * 15 14 12 40 40 H 1.07999 * 119.79782 * 180.27514 * 16 15 14 41 41 H 1.08000 * 119.98047 * 179.74380 * 17 16 15 42 42 H 0.97004 * 120.00125 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.20421 * 359.97438 * 27 14 12 44 44 H 1.07999 * 120.02971 * 180.27513 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0064 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5981 0.0011 9 1 5.9754 1.6533 0.3525 10 6 6.0571 2.8760 -1.4193 11 7 5.9912 3.6807 0.8894 12 6 7.2166 3.6459 1.4493 13 8 7.9645 2.7161 1.2177 14 6 7.6535 4.7418 2.3411 15 6 6.7972 5.8177 2.5994 16 6 7.1964 6.8436 3.4371 17 6 8.4455 6.8236 4.0176 18 6 9.3229 5.7525 3.7649 19 6 10.6059 5.7288 4.3598 20 1 10.7862 6.2709 5.2763 21 6 11.6415 5.0030 3.7609 22 7 11.5475 4.6426 2.5067 23 14 13.1583 4.5486 4.7519 24 1 12.7591 3.7127 5.9127 25 1 14.1007 3.7868 3.8936 26 1 13.8212 5.7856 5.2375 27 6 8.9170 4.7062 2.9193 28 6 3.4312 1.2847 0.0000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2128 2.3203 0.0006 33 1 1.3340 4.5114 0.0019 34 1 3.7922 4.6380 0.0113 35 1 7.1455 2.9342 -1.4190 36 1 5.7368 2.0706 -2.0802 37 1 5.6424 3.8209 -1.7706 38 1 5.3943 4.4225 1.0744 39 1 5.8176 5.8455 2.1455 40 1 6.5264 7.6675 3.6336 41 1 8.7516 7.6303 4.6672 42 1 12.2655 4.1398 2.0913 43 1 9.5826 3.8794 2.7200 44 1 4.0207 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339048511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:59 Heat of formation + Delta-G solvation = -34.935904 kcal Electronic energy + Delta-G solvation = -26170.063730 eV Core-core repulsion = 22438.025892 eV Total energy + Delta-G solvation = -3732.037838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.48862 -39.35055 -37.93698 -36.94875 -34.92400 -33.73913 -31.81103 -30.73759 -29.81321 -29.42867 -28.88612 -27.54163 -25.32920 -24.09322 -22.85739 -22.37466 -21.00184 -20.47783 -19.49484 -18.26951 -17.58531 -16.56120 -16.17144 -16.10749 -15.99776 -15.38297 -15.08979 -14.73656 -14.41437 -14.26065 -13.88710 -13.68709 -13.43460 -13.22816 -13.09447 -12.75725 -12.56211 -12.48650 -12.30462 -12.14898 -11.69186 -11.56182 -11.41214 -11.25410 -11.14011 -11.06941 -10.81263 -10.70532 -10.49740 -10.01876 -9.69008 -9.20107 -9.14025 -8.95074 -8.67638 -8.39745 -7.62449 -7.51381 -6.79377 -4.40624 1.09797 1.26308 2.22161 2.83037 2.98007 3.08274 3.09906 3.17576 3.50240 3.77045 3.88488 3.93133 4.49103 4.56671 4.65143 4.80199 4.82621 4.86258 5.07124 5.14478 5.16779 5.32245 5.41241 5.50799 5.62135 5.67381 5.77623 5.84041 6.01788 6.07608 6.10657 6.22264 6.28003 6.31597 6.40166 6.55305 6.72763 6.89705 6.99719 7.03068 7.16106 7.22139 7.38909 7.70767 7.76623 7.93405 8.10007 8.19904 8.51144 8.80871 8.84233 8.96096 10.15305 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002529 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.943754 B =11070.853408 C =11643.544865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.044 4.044 8 C 0.182 3.818 9 H 0.096 0.904 10 C -0.157 4.157 11 N -0.731 5.731 12 C 0.566 3.434 13 O -0.544 6.544 14 C -0.127 4.127 15 C -0.218 4.218 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.098 3.902 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.911 3.089 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.265 1.265 27 C -0.092 4.092 28 C -0.141 4.141 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.398 0.602 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.134 0.866 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.714 -4.615 -6.706 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.045 4.045 8 C 0.077 3.923 9 H 0.114 0.886 10 C -0.215 4.215 11 N -0.386 5.386 12 C 0.357 3.643 13 O -0.422 6.422 14 C -0.130 4.130 15 C -0.238 4.238 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.096 3.904 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.407 5.407 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.112 4.112 28 C -0.160 4.160 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.235 0.765 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.941 -5.609 -7.079 20.086 hybrid contribution -0.002 0.403 0.390 0.561 sum -17.943 -5.206 -6.689 19.844 Atomic orbital electron populations 1.23046 0.78457 1.03894 1.01316 1.86077 1.21318 1.26977 1.88771 1.18949 0.92158 0.84153 0.96488 1.21218 0.99908 0.92435 1.09456 1.20905 0.94401 0.97027 0.97072 1.20897 0.93779 0.98167 1.03914 1.19804 0.95207 0.92600 0.96879 1.19690 0.88505 0.92992 0.91069 0.88580 1.22162 1.02606 1.01804 0.94955 1.46100 1.17568 1.25330 1.49569 1.18848 0.80219 0.86211 0.79032 1.90695 1.53303 1.36075 1.62161 1.19457 0.96888 0.95067 1.01637 1.20324 0.98605 0.97876 1.07002 1.20429 0.96064 0.97183 0.97915 1.21095 0.95887 0.99267 1.06965 1.17601 0.92760 0.89551 0.90501 1.19555 0.93740 1.26919 1.08657 0.90115 1.25965 1.00481 0.93655 0.94506 1.69785 1.33050 1.27285 1.10577 0.86325 0.80140 0.79547 0.80510 1.18712 1.20221 1.18980 1.21642 0.92891 0.99085 0.97595 1.20243 0.91356 0.98161 1.06201 0.92702 0.88277 0.92638 0.85584 0.85591 0.85698 0.91152 0.91821 0.92332 0.76475 0.89353 0.88927 0.88638 0.90373 0.84801 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.39 10.50 -19.42 -0.20 -3.59 16 3 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 4 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 5 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 6 C -0.15 -1.67 9.06 -39.56 -0.36 -2.02 16 7 C -0.04 -0.55 4.95 -104.65 -0.52 -1.07 16 8 C 0.18 2.66 2.78 -69.08 -0.19 2.47 16 9 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 10 C -0.16 -2.10 9.46 37.16 0.35 -1.75 16 11 N -0.73 -12.27 4.98 -55.87 -0.28 -12.54 16 12 C 0.57 12.38 7.74 -12.31 -0.10 12.28 16 13 O -0.54 -13.54 16.00 5.32 0.09 -13.45 16 14 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 15 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 16 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 17 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 18 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 19 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 20 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.77 16 22 N -0.78 -20.77 10.96 55.55 0.61 -20.16 16 23 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 27 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 28 C -0.14 -1.73 9.61 -39.43 -0.38 -2.10 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.28 6.89 -52.49 -0.36 0.91 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 5.89 4.87 -40.82 -0.20 5.69 16 39 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 43 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 44 H 0.13 1.55 8.04 -52.49 -0.42 1.12 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -30.66 369.64 -9.21 -39.87 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.64 Total: 11.82 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -4.32 Total: -21.33 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.33 Total: -32.70 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.12 Total: -17.04 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.66 -9.21 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339048511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.937 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds