Wall clock time and date at job start Tue Mar 31 2020 16:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00347 * 2 1 4 4 C 1.38756 * 120.05303 * 0.02640 * 3 2 1 5 5 C 1.38119 * 119.94406 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05769 * 359.74504 * 5 4 3 7 7 C 1.38243 * 120.10633 * 0.50907 * 6 5 4 8 8 C 1.50700 * 119.96902 * 179.76729 * 7 6 5 9 9 H 1.09000 * 109.46746 * 159.72271 * 8 7 6 10 10 C 1.52998 * 109.47166 * 279.72249 * 8 7 6 11 11 N 1.46499 * 109.47185 * 39.72568 * 8 7 6 12 12 C 1.34771 * 120.00158 * 154.99954 * 11 8 7 13 13 O 1.21555 * 120.00012 * 359.97438 * 12 11 8 14 14 C 1.47885 * 120.00361 * 179.71994 * 12 11 8 15 15 C 1.39917 * 120.02147 * 359.73121 * 14 12 11 16 16 C 1.38329 * 120.35889 * 179.71388 * 15 14 12 17 17 C 1.37753 * 120.41010 * 0.55751 * 16 15 14 18 18 C 1.40751 * 120.03948 * 359.72380 * 17 16 15 19 19 C 1.41440 * 120.17831 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99985 * 24.43045 * 19 18 17 21 21 C 1.39932 * 120.00056 * 204.43409 * 19 18 17 22 22 N 1.30832 * 119.99693 * 17.87713 * 21 19 18 23 23 Si 1.86793 * 120.00418 * 197.87745 * 21 19 18 24 24 H 1.48508 * 109.47155 * 59.99832 * 23 21 19 25 25 H 1.48499 * 109.47720 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47057 * 300.00332 * 23 21 19 27 27 C 1.38996 * 120.02749 * 179.97438 * 14 12 11 28 28 C 1.38168 * 120.05928 * 359.48983 * 7 6 5 29 29 H 1.09007 * 109.47215 * 60.00042 * 1 2 3 30 30 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46896 * 300.00032 * 1 2 3 32 32 H 1.08005 * 120.02655 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.97232 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.94427 * 180.27545 * 6 5 4 35 35 H 1.08996 * 109.47125 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47401 * 300.00324 * 10 8 7 37 37 H 1.08996 * 109.46876 * 60.00104 * 10 8 7 38 38 H 0.96998 * 119.99940 * 334.99653 * 11 8 7 39 39 H 1.07999 * 119.82459 * 359.96880 * 15 14 12 40 40 H 1.07999 * 119.79782 * 180.27514 * 16 15 14 41 41 H 1.08000 * 119.98047 * 179.74380 * 17 16 15 42 42 H 0.97004 * 120.00125 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.20421 * 359.97438 * 27 14 12 44 44 H 1.07999 * 120.02971 * 180.27513 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0064 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5981 0.0011 9 1 5.9754 1.6533 0.3525 10 6 6.0571 2.8760 -1.4193 11 7 5.9912 3.6807 0.8894 12 6 7.2166 3.6459 1.4493 13 8 7.9645 2.7161 1.2177 14 6 7.6535 4.7418 2.3411 15 6 6.7972 5.8177 2.5994 16 6 7.1964 6.8436 3.4371 17 6 8.4455 6.8236 4.0176 18 6 9.3229 5.7525 3.7649 19 6 10.6059 5.7288 4.3598 20 1 10.7862 6.2709 5.2763 21 6 11.6415 5.0030 3.7609 22 7 11.5475 4.6426 2.5067 23 14 13.1583 4.5486 4.7519 24 1 12.7591 3.7127 5.9127 25 1 14.1007 3.7868 3.8936 26 1 13.8212 5.7856 5.2375 27 6 8.9170 4.7062 2.9193 28 6 3.4312 1.2847 0.0000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2128 2.3203 0.0006 33 1 1.3340 4.5114 0.0019 34 1 3.7922 4.6380 0.0113 35 1 7.1455 2.9342 -1.4190 36 1 5.7368 2.0706 -2.0802 37 1 5.6424 3.8209 -1.7706 38 1 5.3943 4.4225 1.0744 39 1 5.8176 5.8455 2.1455 40 1 6.5264 7.6675 3.6336 41 1 8.7516 7.6303 4.6672 42 1 12.2655 4.1398 2.0913 43 1 9.5826 3.8794 2.7200 44 1 4.0207 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339048511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:58 Heat of formation + Delta-G solvation = -52.294730 kcal Electronic energy + Delta-G solvation = -26170.816465 eV Core-core repulsion = 22438.025892 eV Total energy + Delta-G solvation = -3732.790573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46083 -40.76577 -39.13633 -38.51351 -36.23660 -35.58990 -33.15848 -31.87085 -31.31692 -31.06816 -29.98839 -28.11857 -27.21392 -25.39742 -23.87611 -23.60967 -22.80181 -21.60730 -21.11300 -19.66904 -18.90405 -17.79167 -17.50899 -17.11889 -16.80111 -16.65280 -16.50168 -16.39877 -15.93880 -15.54924 -15.28254 -14.97162 -14.59081 -14.50077 -14.30634 -14.26562 -14.16406 -13.49219 -13.40643 -13.31709 -12.97000 -12.92223 -12.80079 -12.56984 -12.48187 -12.31574 -12.19713 -11.95772 -11.89420 -11.68140 -11.50513 -11.06175 -10.80665 -10.25391 -9.85631 -9.47259 -9.38032 -9.19894 -8.66294 -6.37622 0.24788 0.38816 0.44718 1.01884 1.36149 1.47895 1.50748 2.10016 2.13296 2.19482 2.41816 2.75593 2.80394 3.51973 3.70665 3.84835 3.99043 4.10267 4.14982 4.21249 4.33004 4.35010 4.41170 4.43695 4.53580 4.58629 4.60211 4.73128 4.75033 4.84704 4.93545 5.00119 5.09166 5.17364 5.20183 5.28822 5.31798 5.37736 5.44662 5.52165 5.62462 5.76348 5.86969 5.93184 6.05998 6.29172 6.44206 6.50489 6.67866 6.88164 6.95245 7.29930 8.30290 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002529 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.943754 B =11070.853408 C =11643.544865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.119 3.881 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.156 4.156 7 C -0.054 4.054 8 C 0.183 3.817 9 H 0.073 0.927 10 C -0.151 4.151 11 N -0.707 5.707 12 C 0.563 3.437 13 O -0.586 6.586 14 C -0.138 4.138 15 C -0.197 4.197 16 C -0.095 4.095 17 C -0.217 4.217 18 C 0.066 3.934 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.029 3.971 22 N -0.825 5.825 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.252 1.252 27 C -0.132 4.132 28 C -0.161 4.161 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.099 0.901 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.315 -3.033 -6.808 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.089 4.089 6 C -0.175 4.175 7 C -0.055 4.055 8 C 0.078 3.922 9 H 0.091 0.909 10 C -0.209 4.209 11 N -0.361 5.361 12 C 0.353 3.647 13 O -0.467 6.467 14 C -0.141 4.141 15 C -0.217 4.217 16 C -0.113 4.113 17 C -0.237 4.237 18 C 0.064 3.936 19 C -0.526 4.526 20 H 0.103 0.897 21 C -0.186 4.186 22 N -0.450 5.450 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.152 4.152 28 C -0.180 4.180 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.608 -4.001 -7.191 23.122 hybrid contribution 0.799 -0.082 0.357 0.879 sum -20.809 -4.084 -6.834 22.280 Atomic orbital electron populations 1.23358 0.76242 1.05554 1.02450 1.86053 1.23674 1.26956 1.88683 1.19069 0.91937 0.85162 0.96478 1.21574 1.01326 0.91760 1.07805 1.21270 0.93910 0.98227 0.95444 1.21081 0.94650 0.97840 1.03903 1.19531 0.93420 0.93553 0.98961 1.19735 0.90429 0.91070 0.90926 0.90915 1.22098 1.00639 1.03493 0.94654 1.45888 1.15745 1.26020 1.48427 1.18743 0.81421 0.85406 0.79147 1.90672 1.54929 1.37492 1.63638 1.19761 0.96414 0.96526 1.01432 1.20838 0.99633 0.95933 1.05306 1.20927 0.95589 0.98275 0.96474 1.21413 0.96633 0.98672 1.06953 1.17956 0.93807 0.90550 0.91297 1.19838 0.94594 1.28815 1.09399 0.89742 1.26863 1.03530 0.93027 0.95206 1.69890 1.34207 1.28602 1.12316 0.85247 0.76205 0.79582 0.78695 1.18548 1.19709 1.17529 1.21450 0.94299 0.99055 1.00417 1.20286 0.92355 0.97933 1.07429 0.91292 0.86603 0.91609 0.82807 0.82440 0.84539 0.94081 0.89887 0.90658 0.74948 0.84682 0.84225 0.87298 0.90315 0.88332 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.73 10.50 -92.41 -0.97 -7.70 16 3 C 0.12 2.49 6.69 22.51 0.15 2.64 16 4 C -0.21 -3.29 9.04 22.37 0.20 -3.08 16 5 C -0.07 -1.08 10.04 22.25 0.22 -0.86 16 6 C -0.16 -3.00 9.06 22.28 0.20 -2.80 16 7 C -0.05 -1.29 4.95 -19.88 -0.10 -1.39 16 8 C 0.18 5.34 2.78 44.24 0.12 5.46 16 9 H 0.07 2.47 7.44 -2.39 -0.02 2.45 16 10 C -0.15 -4.02 9.46 71.98 0.68 -3.34 16 11 N -0.71 -23.22 4.98 -448.94 -2.23 -25.45 16 12 C 0.56 25.24 7.74 86.80 0.67 25.91 16 13 O -0.59 -30.99 16.00 -3.89 -0.06 -31.06 16 14 C -0.14 -6.62 5.87 -20.13 -0.12 -6.73 16 15 C -0.20 -7.76 9.55 22.70 0.22 -7.55 16 16 C -0.09 -3.74 10.01 22.18 0.22 -3.52 16 17 C -0.22 -10.16 9.78 22.77 0.22 -9.94 16 18 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 19 C -0.50 -27.33 9.05 23.47 0.21 -27.11 16 20 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 21 C 0.03 1.52 5.14 85.25 0.44 1.96 16 22 N -0.82 -46.62 10.96 21.82 0.24 -46.38 16 23 Si 0.98 40.14 29.59 68.60 2.03 42.17 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 27 C -0.13 -7.41 8.24 23.01 0.19 -7.22 16 28 C -0.16 -3.88 9.61 22.37 0.21 -3.67 16 29 H 0.07 0.50 7.66 -2.38 -0.02 0.48 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 32 H 0.15 1.53 6.30 -2.91 -0.02 1.52 16 33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.14 2.23 6.89 -2.91 -0.02 2.21 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 11.04 4.87 -92.71 -0.45 10.59 16 39 H 0.14 4.00 6.38 -2.91 -0.02 3.98 16 40 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 43 H 0.10 6.19 5.74 -2.91 -0.02 6.17 16 44 H 0.12 3.05 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -72.56 369.64 4.33 -68.24 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.58 Total: 36.62 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.75 Total: -36.43 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.99 Total: -71.83 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.03 Total: -38.76 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -72.56 4.33 -68.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339048511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.940 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds