Wall clock time and date at job start Tue Mar 31 2020 16:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47017 * 119.99222 * 2 1 3 5 5 C 1.38282 * 119.97823 * 246.02478 * 4 2 1 6 6 C 1.38237 * 120.11507 * 179.97438 * 5 4 2 7 7 C 1.38168 * 120.05430 * 0.02562 * 6 5 4 8 8 C 1.38702 * 119.94467 * 0.02562 * 7 6 5 9 9 O 1.35900 * 120.05629 * 180.02562 * 8 7 6 10 10 C 1.38128 * 119.96656 * 65.75058 * 4 2 1 11 11 N 1.46504 * 109.47501 * 239.99781 * 2 1 3 12 12 C 1.46505 * 119.99478 * 304.71742 * 11 2 1 13 13 C 1.34771 * 120.00080 * 124.71438 * 11 2 1 14 14 O 1.21585 * 120.00519 * 4.64827 * 13 11 2 15 15 C 1.47643 * 119.99597 * 184.64408 * 13 11 2 16 16 C 1.40014 * 119.89884 * 329.31507 * 15 13 11 17 17 C 1.36317 * 120.10637 * 179.71732 * 16 15 13 18 18 C 1.40892 * 119.89220 * 0.57883 * 17 16 15 19 19 C 1.41108 * 120.10172 * 179.67479 * 18 17 16 20 20 H 1.07997 * 119.99729 * 208.90843 * 19 18 17 21 21 C 1.40229 * 120.00077 * 28.90749 * 19 18 17 22 22 N 1.30642 * 119.99946 * 10.37560 * 21 19 18 23 23 Si 1.86799 * 119.99795 * 190.37676 * 21 19 18 24 24 H 1.48498 * 109.47394 * 59.99806 * 23 21 19 25 25 H 1.48500 * 109.47100 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47039 * 299.99733 * 23 21 19 27 27 C 1.40888 * 119.79086 * 359.69907 * 18 17 16 28 28 C 1.36317 * 119.89247 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.46736 * 60.00434 * 1 2 3 30 30 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47497 * 300.00689 * 1 2 3 32 32 H 1.08003 * 119.93813 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.97491 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02140 * 180.02562 * 7 6 5 35 35 H 0.96701 * 114.00000 * 89.99870 * 9 8 7 36 36 H 1.08000 * 120.02900 * 0.02562 * 10 4 2 37 37 H 1.09005 * 109.46885 * 274.82721 * 12 11 2 38 38 H 1.08997 * 109.46862 * 154.82783 * 12 11 2 39 39 H 1.08995 * 109.46979 * 34.82319 * 12 11 2 40 40 H 1.08002 * 119.94283 * 0.02562 * 16 15 13 41 41 H 1.08006 * 120.05341 * 180.25604 * 17 16 15 42 42 H 0.96998 * 119.99848 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.05388 * 179.97438 * 27 18 17 44 44 H 1.07997 * 119.94320 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.7215 -0.0069 2.2014 6 6 3.1830 -0.6554 3.3316 7 6 2.9571 -2.0089 3.4935 8 6 2.2670 -2.7169 2.5208 9 8 2.0431 -4.0481 2.6780 10 6 1.7989 -2.0623 1.3904 11 7 2.0184 -0.6907 -1.1961 12 6 1.5813 -2.0596 -1.4813 13 6 2.8697 -0.0667 -2.0342 14 8 3.2986 1.0362 -1.7550 15 6 3.2816 -0.7225 -3.2912 16 6 3.3625 -2.1188 -3.3559 17 6 3.7367 -2.7290 -4.5160 18 6 4.0541 -1.9518 -5.6475 19 6 4.4486 -2.5786 -6.8486 20 1 5.1119 -2.0684 -7.5313 21 6 3.9795 -3.8639 -7.1557 22 7 3.0260 -4.3993 -6.4409 23 14 4.7179 -4.8104 -8.5869 24 1 6.1716 -5.0052 -8.3542 25 1 4.0528 -6.1332 -8.7013 26 1 4.5159 -4.0450 -9.8433 27 6 3.9768 -0.5469 -5.5757 28 6 3.5952 0.0540 -4.4132 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8994 1.0510 2.0763 33 1 3.7207 -0.1038 4.0886 34 1 3.3176 -2.5150 4.3769 35 1 1.2168 -4.2566 3.1351 36 1 1.2571 -2.6104 0.6339 37 1 2.2183 -2.7634 -0.9455 38 1 1.6524 -2.2480 -2.5525 39 1 0.5481 -2.1859 -1.1578 40 1 3.1232 -2.7135 -2.4867 41 1 3.7948 -3.8064 -4.5662 42 1 2.7017 -5.2885 -6.6531 43 1 4.2196 0.0530 -6.4404 44 1 3.5361 1.1309 -4.3572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340304397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:32 Heat of formation + Delta-G solvation = -13.376739 kcal Electronic energy + Delta-G solvation = -26948.883798 eV Core-core repulsion = 23217.780835 eV Total energy + Delta-G solvation = -3731.102962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.35873 -39.23158 -37.45340 -36.82062 -35.47932 -33.90651 -32.35620 -30.29337 -29.90159 -29.52493 -29.03779 -26.82282 -25.93675 -23.78573 -22.63470 -22.03466 -20.98626 -20.57935 -18.95569 -18.10071 -17.48461 -16.54108 -16.50986 -16.15901 -15.52600 -15.40964 -15.00963 -14.88846 -14.29813 -13.96410 -13.71629 -13.63555 -13.38258 -12.90955 -12.68663 -12.59510 -12.34014 -12.22772 -12.09437 -11.90156 -11.83746 -11.58171 -11.51449 -11.22500 -11.11409 -11.07832 -10.95593 -10.56064 -10.48746 -10.01594 -9.46492 -9.33090 -9.06652 -8.84679 -8.66716 -8.28373 -7.64575 -7.47542 -6.93603 -4.58988 1.14575 1.22809 2.28044 2.96064 2.96754 3.00028 3.01138 3.35383 3.66426 3.76551 3.81704 4.07426 4.53768 4.60627 4.79187 5.00519 5.13902 5.23564 5.27492 5.37426 5.42275 5.52350 5.62067 5.67949 5.70389 5.80468 5.88987 6.01451 6.05981 6.17012 6.23006 6.28778 6.30278 6.32276 6.52257 6.69834 6.78625 6.86435 6.94072 7.06841 7.14952 7.46691 7.52337 7.60203 7.80915 7.87948 8.03832 8.10587 8.43531 8.67159 8.77171 8.95756 9.97615 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003058 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.713076 B = 9154.483373 C =10091.279619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 H 0.107 0.893 4 C -0.071 4.071 5 C -0.115 4.115 6 C -0.105 4.105 7 C -0.150 4.150 8 C 0.101 3.899 9 O -0.498 6.498 10 C -0.139 4.139 11 N -0.612 5.612 12 C 0.056 3.944 13 C 0.576 3.424 14 O -0.569 6.569 15 C -0.274 4.274 16 C -0.084 4.084 17 C -0.171 4.171 18 C 0.128 3.872 19 C -0.448 4.448 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.233 4.233 28 C -0.029 4.029 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.387 0.613 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.285 0.715 43 H 0.098 0.902 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 0.350 14.877 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.071 3.929 3 H 0.125 0.875 4 C -0.072 4.072 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.168 4.168 8 C 0.057 3.943 9 O -0.308 6.308 10 C -0.157 4.157 11 N -0.345 5.345 12 C -0.086 4.086 13 C 0.372 3.628 14 O -0.450 6.450 15 C -0.279 4.279 16 C -0.102 4.102 17 C -0.191 4.191 18 C 0.125 3.875 19 C -0.476 4.476 20 H 0.100 0.900 21 C -0.147 4.147 22 N -0.408 5.408 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.253 4.253 28 C -0.048 4.048 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.242 0.758 36 H 0.153 0.847 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.753 0.646 14.721 15.818 hybrid contribution -0.200 -0.672 -0.309 0.767 sum -5.953 -0.026 14.412 15.593 Atomic orbital electron populations 1.22132 0.94274 1.02515 1.02513 1.19845 0.93874 0.97370 0.81807 0.87473 1.20153 0.97495 0.93751 0.95844 1.21122 0.97962 1.00430 0.93854 1.20995 0.99463 0.94022 0.97830 1.21394 1.01588 0.94512 0.99342 1.18459 0.98790 0.82948 0.94119 1.84861 1.45251 1.19724 1.80974 1.21599 1.01536 0.94351 0.98223 1.47714 1.47762 1.15542 1.23470 1.22672 0.98560 0.82719 1.04627 1.18752 0.76476 0.84358 0.83196 1.90625 1.56482 1.21764 1.76175 1.18858 1.21399 0.93642 0.93959 1.21128 0.98141 0.92927 0.98030 1.21079 1.06106 1.00171 0.91710 1.17801 0.86322 0.90958 0.92447 1.19770 1.24721 0.99172 1.03941 0.89990 1.26038 0.93372 0.97326 0.97927 1.69690 1.19465 1.15670 1.35962 0.86235 0.80320 0.78546 0.80951 1.18624 1.20110 1.18795 1.20752 1.12291 0.94976 0.97262 1.20282 0.95017 0.97410 0.92064 0.91585 0.92092 0.91531 0.85605 0.85644 0.85708 0.75767 0.84671 0.92734 0.87269 0.92372 0.87208 0.85883 0.90385 0.88391 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.92 37.16 0.33 -1.45 16 2 C 0.17 2.52 2.94 -69.08 -0.20 2.32 16 3 H 0.11 1.70 6.68 -51.93 -0.35 1.35 16 4 C -0.07 -0.95 4.96 -104.65 -0.52 -1.47 16 5 C -0.12 -1.42 9.67 -39.57 -0.38 -1.80 16 6 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 7 C -0.15 -1.66 9.99 -39.44 -0.39 -2.05 16 8 C 0.10 1.22 6.70 -39.22 -0.26 0.95 16 9 O -0.50 -5.36 13.50 -19.43 -0.26 -5.62 16 10 C -0.14 -1.77 8.00 -39.43 -0.32 -2.08 16 11 N -0.61 -10.54 2.75 -176.45 -0.49 -11.02 16 12 C 0.06 0.86 6.69 59.85 0.40 1.26 16 13 C 0.58 12.37 7.44 -12.42 -0.09 12.28 16 14 O -0.57 -13.50 16.05 5.29 0.08 -13.41 16 15 C -0.27 -6.28 5.53 -104.73 -0.58 -6.86 16 16 C -0.08 -1.86 7.37 -39.61 -0.29 -2.15 16 17 C -0.17 -4.20 8.60 -39.27 -0.34 -4.54 16 18 C 0.13 3.26 5.55 -106.80 -0.59 2.67 16 19 C -0.45 -11.22 9.05 -37.75 -0.34 -11.56 16 20 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.71 5.26 -17.31 -0.09 1.62 16 22 N -0.78 -18.77 10.81 55.56 0.60 -18.17 16 23 Si 0.92 17.56 29.57 -169.99 -5.03 12.53 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.23 -5.65 9.73 -39.27 -0.38 -6.03 16 28 C -0.03 -0.67 9.52 -39.61 -0.38 -1.05 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.06 0.64 6.18 -51.93 -0.32 0.32 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.42 7.95 -52.48 -0.42 1.00 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.39 2.13 9.06 45.56 0.41 2.54 16 36 H 0.14 1.64 4.91 -52.49 -0.26 1.38 16 37 H 0.05 0.81 6.09 -51.93 -0.32 0.49 16 38 H 0.11 1.89 4.58 -51.93 -0.24 1.66 16 39 H 0.06 0.72 5.68 -51.93 -0.29 0.42 16 40 H 0.11 2.16 4.63 -52.49 -0.24 1.92 16 41 H 0.12 3.07 6.20 -52.48 -0.33 2.75 16 42 H 0.28 6.19 8.29 -40.82 -0.34 5.86 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 44 H 0.10 2.17 7.91 -52.49 -0.42 1.76 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -30.11 356.49 -8.97 -39.08 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -4.42 Total: 12.74 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -4.83 Total: -21.48 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.12 Total: -29.19 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.18 Total: -19.04 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.11 -8.97 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340304397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.701 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds