Wall clock time and date at job start Tue Mar 31 2020 16:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47017 * 119.99222 * 2 1 3 5 5 C 1.38282 * 119.97823 * 246.02478 * 4 2 1 6 6 C 1.38237 * 120.11507 * 179.97438 * 5 4 2 7 7 C 1.38168 * 120.05430 * 0.02562 * 6 5 4 8 8 C 1.38702 * 119.94467 * 0.02562 * 7 6 5 9 9 O 1.35900 * 120.05629 * 180.02562 * 8 7 6 10 10 C 1.38128 * 119.96656 * 65.75058 * 4 2 1 11 11 N 1.46504 * 109.47501 * 239.99781 * 2 1 3 12 12 C 1.46505 * 119.99478 * 304.71742 * 11 2 1 13 13 C 1.34771 * 120.00080 * 124.71438 * 11 2 1 14 14 O 1.21585 * 120.00519 * 4.64827 * 13 11 2 15 15 C 1.47643 * 119.99597 * 184.64408 * 13 11 2 16 16 C 1.40014 * 119.89884 * 329.31507 * 15 13 11 17 17 C 1.36317 * 120.10637 * 179.71732 * 16 15 13 18 18 C 1.40892 * 119.89220 * 0.57883 * 17 16 15 19 19 C 1.41108 * 120.10172 * 179.67479 * 18 17 16 20 20 H 1.07997 * 119.99729 * 208.90843 * 19 18 17 21 21 C 1.40229 * 120.00077 * 28.90749 * 19 18 17 22 22 N 1.30642 * 119.99946 * 10.37560 * 21 19 18 23 23 Si 1.86799 * 119.99795 * 190.37676 * 21 19 18 24 24 H 1.48498 * 109.47394 * 59.99806 * 23 21 19 25 25 H 1.48500 * 109.47100 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47039 * 299.99733 * 23 21 19 27 27 C 1.40888 * 119.79086 * 359.69907 * 18 17 16 28 28 C 1.36317 * 119.89247 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.46736 * 60.00434 * 1 2 3 30 30 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47497 * 300.00689 * 1 2 3 32 32 H 1.08003 * 119.93813 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.97491 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02140 * 180.02562 * 7 6 5 35 35 H 0.96701 * 114.00000 * 89.99870 * 9 8 7 36 36 H 1.08000 * 120.02900 * 0.02562 * 10 4 2 37 37 H 1.09005 * 109.46885 * 274.82721 * 12 11 2 38 38 H 1.08997 * 109.46862 * 154.82783 * 12 11 2 39 39 H 1.08995 * 109.46979 * 34.82319 * 12 11 2 40 40 H 1.08002 * 119.94283 * 0.02562 * 16 15 13 41 41 H 1.08006 * 120.05341 * 180.25604 * 17 16 15 42 42 H 0.96998 * 119.99848 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.05388 * 179.97438 * 27 18 17 44 44 H 1.07997 * 119.94320 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.7215 -0.0069 2.2014 6 6 3.1830 -0.6554 3.3316 7 6 2.9571 -2.0089 3.4935 8 6 2.2670 -2.7169 2.5208 9 8 2.0431 -4.0481 2.6780 10 6 1.7989 -2.0623 1.3904 11 7 2.0184 -0.6907 -1.1961 12 6 1.5813 -2.0596 -1.4813 13 6 2.8697 -0.0667 -2.0342 14 8 3.2986 1.0362 -1.7550 15 6 3.2816 -0.7225 -3.2912 16 6 3.3625 -2.1188 -3.3559 17 6 3.7367 -2.7290 -4.5160 18 6 4.0541 -1.9518 -5.6475 19 6 4.4486 -2.5786 -6.8486 20 1 5.1119 -2.0684 -7.5313 21 6 3.9795 -3.8639 -7.1557 22 7 3.0260 -4.3993 -6.4409 23 14 4.7179 -4.8104 -8.5869 24 1 6.1716 -5.0052 -8.3542 25 1 4.0528 -6.1332 -8.7013 26 1 4.5159 -4.0450 -9.8433 27 6 3.9768 -0.5469 -5.5757 28 6 3.5952 0.0540 -4.4132 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8994 1.0510 2.0763 33 1 3.7207 -0.1038 4.0886 34 1 3.3176 -2.5150 4.3769 35 1 1.2168 -4.2566 3.1351 36 1 1.2571 -2.6104 0.6339 37 1 2.2183 -2.7634 -0.9455 38 1 1.6524 -2.2480 -2.5525 39 1 0.5481 -2.1859 -1.1578 40 1 3.1232 -2.7135 -2.4867 41 1 3.7948 -3.8064 -4.5662 42 1 2.7017 -5.2885 -6.6531 43 1 4.2196 0.0530 -6.4404 44 1 3.5361 1.1309 -4.3572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340304397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:31 Heat of formation + Delta-G solvation = -30.406179 kcal Electronic energy + Delta-G solvation = -26949.622250 eV Core-core repulsion = 23217.780835 eV Total energy + Delta-G solvation = -3731.841414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59404 -40.48721 -39.03149 -38.01932 -36.75637 -35.67874 -33.66799 -31.65866 -31.38539 -31.03543 -30.04885 -28.17293 -27.67094 -24.96725 -23.68296 -23.38541 -22.76958 -21.89153 -20.42587 -19.35616 -18.98394 -18.04140 -17.63503 -17.40769 -17.07533 -16.47057 -16.29579 -16.06269 -15.86118 -15.31856 -15.04449 -14.74018 -14.72206 -14.48037 -14.29041 -14.07272 -13.64478 -13.47084 -13.33183 -13.18873 -13.08354 -12.90284 -12.81552 -12.62737 -12.54709 -12.50973 -12.24071 -12.11393 -11.75726 -11.42709 -11.22821 -11.10802 -10.65082 -9.84115 -9.71829 -9.57475 -9.48019 -9.33206 -8.70442 -6.47945 0.23599 0.33675 0.49872 1.12431 1.40143 1.44991 1.51946 2.01341 2.11213 2.19268 2.71277 2.77565 3.26585 3.57755 3.64628 3.88011 4.01326 4.10815 4.17812 4.19649 4.33031 4.36098 4.40852 4.43905 4.54686 4.57883 4.73363 4.83671 4.87598 4.94521 4.97357 5.03084 5.05583 5.16400 5.20897 5.30242 5.41451 5.43523 5.52135 5.60433 5.67154 5.81360 5.87968 5.96897 6.00786 6.24061 6.44845 6.56717 6.80620 6.87803 6.89846 7.31135 8.23364 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003058 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.713076 B = 9154.483373 C =10091.279619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.172 3.828 3 H 0.088 0.912 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.102 4.102 7 C -0.152 4.152 8 C 0.098 3.902 9 O -0.509 6.509 10 C -0.150 4.150 11 N -0.603 5.603 12 C 0.056 3.944 13 C 0.572 3.428 14 O -0.600 6.600 15 C -0.283 4.283 16 C -0.071 4.071 17 C -0.190 4.190 18 C 0.102 3.898 19 C -0.481 4.481 20 H 0.082 0.918 21 C 0.036 3.964 22 N -0.807 5.807 23 Si 0.987 3.013 24 H -0.260 1.260 25 H -0.264 1.264 26 H -0.260 1.260 27 C -0.247 4.247 28 C -0.038 4.038 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.295 0.705 43 H 0.104 0.896 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 -1.053 16.382 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.069 3.931 3 H 0.106 0.894 4 C -0.086 4.086 5 C -0.149 4.149 6 C -0.120 4.120 7 C -0.171 4.171 8 C 0.053 3.947 9 O -0.322 6.322 10 C -0.168 4.168 11 N -0.334 5.334 12 C -0.086 4.086 13 C 0.367 3.633 14 O -0.484 6.484 15 C -0.287 4.287 16 C -0.090 4.090 17 C -0.210 4.210 18 C 0.099 3.901 19 C -0.509 4.509 20 H 0.100 0.900 21 C -0.181 4.181 22 N -0.431 5.431 23 Si 0.808 3.192 24 H -0.185 1.185 25 H -0.188 1.188 26 H -0.185 1.185 27 C -0.267 4.267 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.269 0.731 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.472 -0.773 16.271 17.529 hybrid contribution -0.063 -0.235 -0.614 0.661 sum -6.535 -1.008 15.657 16.996 Atomic orbital electron populations 1.22090 0.91756 1.03588 1.03213 1.20017 0.95771 0.96168 0.81113 0.89426 1.20056 0.98689 0.94214 0.95659 1.21301 0.98282 1.00858 0.94468 1.21293 0.98752 0.94230 0.97702 1.21687 1.00923 0.94637 0.99813 1.18577 0.98616 0.83412 0.94052 1.84801 1.46980 1.18966 1.81479 1.21647 1.02172 0.94098 0.98888 1.47714 1.46107 1.16065 1.23481 1.22701 1.00848 0.81649 1.03365 1.18574 0.77220 0.84122 0.83421 1.90601 1.57908 1.22931 1.76914 1.19147 1.20893 0.94028 0.94639 1.21349 0.96470 0.92916 0.98235 1.21077 1.07697 0.99798 0.92403 1.18137 0.87099 0.91639 0.93267 1.20032 1.25830 1.00722 1.04278 0.89998 1.26848 0.93293 0.97484 1.00492 1.69722 1.19882 1.16308 1.37208 0.85159 0.79344 0.77371 0.77363 1.18462 1.18787 1.18456 1.20890 1.12948 0.94930 0.97899 1.20440 0.95091 0.97842 0.92330 0.92364 0.90749 0.89371 0.85339 0.83094 0.83659 0.73134 0.84317 0.91899 0.89416 0.88901 0.84621 0.86695 0.89435 0.87748 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.92 71.98 0.64 -2.47 16 2 C 0.17 4.81 2.94 44.24 0.13 4.94 16 3 H 0.09 2.80 6.68 -2.39 -0.02 2.78 16 4 C -0.08 -2.15 4.96 -19.88 -0.10 -2.25 16 5 C -0.13 -3.04 9.67 22.28 0.22 -2.82 16 6 C -0.10 -1.97 10.04 22.25 0.22 -1.74 16 7 C -0.15 -2.94 9.99 22.36 0.22 -2.72 16 8 C 0.10 2.11 6.70 22.50 0.15 2.26 16 9 O -0.51 -9.57 13.50 -92.42 -1.25 -10.82 16 10 C -0.15 -3.50 8.00 22.37 0.18 -3.32 16 11 N -0.60 -20.34 2.75 -830.42 -2.29 -22.62 16 12 C 0.06 1.61 6.69 127.77 0.85 2.47 16 13 C 0.57 24.77 7.44 86.73 0.65 25.41 16 14 O -0.60 -28.98 16.05 -3.98 -0.06 -29.05 16 15 C -0.28 -13.16 5.53 -19.93 -0.11 -13.27 16 16 C -0.07 -3.21 7.37 22.25 0.16 -3.05 16 17 C -0.19 -9.55 8.60 22.47 0.19 -9.36 16 18 C 0.10 5.35 5.55 -21.28 -0.12 5.23 16 19 C -0.48 -24.68 9.05 23.46 0.21 -24.47 16 20 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 21 C 0.04 1.71 5.26 85.35 0.45 2.16 16 22 N -0.81 -38.82 10.81 21.87 0.24 -38.59 16 23 Si 0.99 35.59 29.57 68.60 2.03 37.62 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 25 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 26 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 27 C -0.25 -12.39 9.73 22.47 0.22 -12.18 16 28 C -0.04 -1.83 9.52 22.25 0.21 -1.62 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.35 6.18 -2.39 -0.01 1.33 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 2.82 7.95 -2.91 -0.02 2.79 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.41 3.31 9.06 -74.06 -0.67 2.64 16 36 H 0.14 3.02 4.91 -2.91 -0.01 3.01 16 37 H 0.06 1.75 6.09 -2.38 -0.01 1.73 16 38 H 0.09 2.97 4.58 -2.39 -0.01 2.96 16 39 H 0.09 2.05 5.68 -2.39 -0.01 2.03 16 40 H 0.14 5.27 4.63 -2.91 -0.01 5.26 16 41 H 0.12 5.88 6.20 -2.91 -0.02 5.86 16 42 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 43 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.10 4.71 7.91 -2.91 -0.02 4.69 16 Total: -1.00 -66.10 356.49 3.44 -62.66 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.39 Total: 37.60 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.39 Total: -36.80 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -2.05 Total: -61.21 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.31 Total: -39.87 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -66.10 3.44 -62.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340304397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.249 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds