Wall clock time and date at job start Tue Mar 31 2020 14:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99745 * 2 1 4 4 N 1.46498 * 109.47236 * 127.25664 * 3 2 1 5 5 C 1.46494 * 120.00036 * 277.12797 * 4 3 2 6 6 C 1.53003 * 109.46868 * 270.00007 * 5 4 3 7 7 C 1.50700 * 109.47236 * 180.02562 * 6 5 4 8 8 C 1.34513 * 125.78872 * 89.71275 * 7 6 5 9 9 C 1.41391 * 106.84243 * 179.89260 * 8 7 6 10 10 C 1.34514 * 106.83295 * 0.37056 * 9 8 7 11 11 O 1.34298 * 108.42797 * 359.77307 * 10 9 8 12 12 C 1.34779 * 119.99814 * 97.12254 * 4 3 2 13 13 O 1.21590 * 120.00031 * 185.44442 * 12 4 3 14 14 C 1.47635 * 120.00174 * 5.17103 * 12 4 3 15 15 C 1.40016 * 119.89516 * 309.86500 * 14 12 4 16 16 C 1.36320 * 120.10353 * 179.75966 * 15 14 12 17 17 C 1.40884 * 119.89299 * 0.53638 * 16 15 14 18 18 C 1.41117 * 120.10186 * 179.69564 * 17 16 15 19 19 H 1.07990 * 119.99989 * 159.58243 * 18 17 16 20 20 C 1.40230 * 119.99942 * 339.58030 * 18 17 16 21 21 N 1.30647 * 119.99799 * 327.04300 * 20 18 17 22 22 Si 1.86793 * 120.00017 * 147.04101 * 20 18 17 23 23 H 1.48500 * 109.47078 * 94.99162 * 22 20 18 24 24 H 1.48499 * 109.47201 * 214.99238 * 22 20 18 25 25 H 1.48501 * 109.47105 * 334.99487 * 22 20 18 26 26 C 1.40887 * 119.79643 * 359.72028 * 17 16 15 27 27 C 1.36319 * 119.88646 * 359.97438 * 26 17 16 28 28 H 1.07997 * 120.00002 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00164 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47158 * 7.25267 * 3 2 1 32 32 H 1.09007 * 109.46467 * 247.25754 * 3 2 1 33 33 H 1.08998 * 109.47401 * 29.99663 * 5 4 3 34 34 H 1.09001 * 109.47510 * 150.00418 * 5 4 3 35 35 H 1.09005 * 109.47095 * 299.99702 * 6 5 4 36 36 H 1.08997 * 109.47190 * 59.99857 * 6 5 4 37 37 H 1.08003 * 126.58339 * 0.02840 * 8 7 6 38 38 H 1.07991 * 126.58487 * 180.16866 * 9 8 7 39 39 H 1.08002 * 125.78643 * 179.75397 * 10 9 8 40 40 H 1.07991 * 119.94537 * 0.02562 * 15 14 12 41 41 H 1.08000 * 120.05039 * 180.23784 * 16 15 14 42 42 H 0.97003 * 119.99555 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.05604 * 179.97438 * 26 17 16 44 44 H 1.08003 * 119.94026 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0317 1.3101 1.0993 5 6 2.6014 1.6691 2.4529 6 6 2.7528 3.1784 2.6526 7 6 2.3108 3.5477 4.0452 8 6 3.0969 3.5851 5.1360 9 6 2.2773 3.9806 6.2182 10 6 1.0377 4.1532 5.7253 11 8 1.0639 3.8896 4.4087 12 6 4.3184 0.9842 0.8654 13 8 5.1003 0.8917 1.7920 14 6 4.7773 0.7337 -0.5153 15 6 4.0644 -0.1463 -1.3387 16 6 4.4815 -0.3770 -2.6158 17 6 5.6381 0.2629 -3.1032 18 6 6.0774 0.0223 -4.4225 19 1 6.7367 0.7259 -4.9088 20 6 5.6579 -1.1304 -5.1019 21 7 5.4448 -2.2370 -4.4410 22 14 5.4038 -1.0837 -6.9519 23 1 6.6347 -1.5597 -7.6328 24 1 4.2643 -1.9630 -7.3174 25 1 5.1105 0.3089 -7.3762 26 6 6.3551 1.1434 -2.2692 27 6 5.9268 1.3726 -0.9955 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3623 2.1295 0.1297 32 1 2.5891 1.4211 -0.9479 33 1 1.5573 1.3875 2.5889 34 1 3.2176 1.1426 3.1817 35 1 3.7970 3.4600 2.5166 36 1 2.1367 3.7050 1.9238 37 1 4.1521 3.3588 5.1771 38 1 2.5864 4.1148 7.2442 39 1 0.1686 4.4527 6.2923 40 1 3.1804 -0.6397 -0.9627 41 1 3.9288 -1.0530 -3.2515 42 1 5.1549 -3.0345 -4.9111 43 1 7.2426 1.6359 -2.6383 44 1 6.4760 2.0471 -0.3553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352598990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:35 Heat of formation + Delta-G solvation = 20.541580 kcal Electronic energy + Delta-G solvation = -26464.453899 eV Core-core repulsion = 22734.821746 eV Total energy + Delta-G solvation = -3729.632154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.62784 -39.63001 -37.23807 -36.01981 -34.24942 -33.75224 -32.97015 -31.90093 -30.25188 -29.53907 -28.06517 -26.07929 -25.66710 -23.59284 -21.82192 -21.41347 -21.14737 -20.41683 -20.10340 -18.60091 -17.53369 -17.44612 -16.70159 -16.35936 -15.85666 -15.38524 -15.14535 -14.54731 -14.45293 -14.31598 -13.84556 -13.54958 -13.08484 -13.04529 -12.88785 -12.73027 -12.69478 -12.30638 -12.24903 -12.06954 -12.04787 -11.88683 -11.31626 -11.25911 -11.12398 -11.00816 -10.92033 -10.63979 -10.18446 -10.00203 -9.54261 -9.37504 -9.16862 -9.00321 -8.69645 -8.25218 -7.67827 -7.63531 -7.15475 -4.54324 1.63692 2.24622 2.41473 2.54201 2.87824 2.88752 2.94166 3.01057 3.02772 3.52159 3.65386 3.72719 4.34472 4.65723 4.86531 4.95214 5.00977 5.09554 5.16655 5.25736 5.43200 5.50734 5.54454 5.58009 5.73514 5.84591 5.90364 5.92255 6.04038 6.06412 6.13917 6.17644 6.24495 6.43307 6.63538 6.68823 6.78393 6.82878 6.97865 7.05219 7.06824 7.11789 7.43370 7.60091 7.79360 7.86989 7.97843 8.06675 8.38402 8.63218 8.76862 8.89512 9.78145 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002639 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.724415 B =10607.560908 C =11321.976652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.131 3.869 4 N -0.614 5.614 5 C 0.123 3.877 6 C -0.055 4.055 7 C -0.001 4.001 8 C -0.210 4.210 9 C -0.212 4.212 10 C -0.050 4.050 11 O -0.177 6.177 12 C 0.580 3.420 13 O -0.559 6.559 14 C -0.289 4.289 15 C -0.066 4.066 16 C -0.191 4.191 17 C 0.127 3.873 18 C -0.451 4.451 19 H 0.086 0.914 20 C 0.087 3.913 21 N -0.751 5.751 22 Si 0.900 3.100 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.240 4.240 27 C -0.027 4.027 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.200 0.800 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.288 0.712 43 H 0.096 0.904 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 7.119 9.704 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.347 5.347 5 C -0.001 4.001 6 C -0.094 4.094 7 C -0.052 4.052 8 C -0.229 4.229 9 C -0.231 4.231 10 C -0.118 4.118 11 O -0.073 6.073 12 C 0.374 3.626 13 O -0.439 6.439 14 C -0.293 4.293 15 C -0.084 4.084 16 C -0.211 4.211 17 C 0.124 3.876 18 C -0.478 4.478 19 H 0.104 0.896 20 C -0.138 4.138 21 N -0.372 5.372 22 Si 0.723 3.277 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.178 1.178 26 C -0.259 4.259 27 C -0.046 4.046 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.217 0.783 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.600 6.813 9.989 16.080 hybrid contribution -0.077 -0.226 -0.532 0.583 sum -10.677 6.587 9.457 15.710 Atomic orbital electron populations 1.23781 0.95703 1.01672 1.01768 1.23552 0.96120 0.99592 0.98817 1.20827 0.91428 0.94438 0.92468 1.47911 1.09199 1.69600 1.07967 1.21247 1.00625 0.92873 0.85322 1.20571 1.02663 0.97812 0.88331 1.22388 0.81929 1.03505 0.97340 1.21681 1.01428 1.07757 0.92006 1.21841 0.93605 1.07137 1.00567 1.23974 1.00033 1.06287 0.81483 1.84014 1.31134 1.66936 1.25266 1.18883 0.80105 0.73800 0.89770 1.90659 1.54074 1.52913 1.46211 1.18693 1.03968 1.12918 0.93742 1.20717 0.97465 0.96277 0.93972 1.20733 0.98999 1.05711 0.95607 1.17665 0.89579 0.88604 0.91728 1.19750 1.25330 1.04747 0.97935 0.89564 1.26101 0.91869 0.94251 1.01595 1.69848 1.27084 1.00315 1.39904 0.86427 0.79163 0.80184 0.81945 1.19200 1.19635 1.17821 1.20578 1.02340 1.08449 0.94567 1.20180 0.93093 0.96398 0.94946 0.88575 0.88653 0.86759 0.91002 0.87029 0.90810 0.89562 0.88374 0.90005 0.83348 0.83609 0.78314 0.88221 0.87469 0.90056 0.88563 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.16 -2.18 8.58 -36.02 -0.31 -2.49 16 3 C 0.13 1.86 5.34 -5.19 -0.03 1.84 16 4 N -0.61 -9.95 2.46 -176.25 -0.43 -10.39 16 5 C 0.12 1.72 5.44 -4.04 -0.02 1.70 16 6 C -0.06 -0.70 6.07 -27.88 -0.17 -0.87 16 7 C 0.00 -0.01 6.58 -35.63 -0.23 -0.25 16 8 C -0.21 -2.58 10.81 -39.70 -0.43 -3.00 16 9 C -0.21 -2.21 10.91 -39.70 -0.43 -2.65 16 10 C -0.05 -0.49 12.09 29.42 0.36 -0.13 16 11 O -0.18 -2.16 10.65 5.72 0.06 -2.09 16 12 C 0.58 11.91 7.20 -12.42 -0.09 11.82 16 13 O -0.56 -13.00 16.59 5.29 0.09 -12.91 16 14 C -0.29 -6.39 4.91 -104.73 -0.51 -6.90 16 15 C -0.07 -1.43 7.45 -39.61 -0.30 -1.73 16 16 C -0.19 -4.60 8.74 -39.27 -0.34 -4.94 16 17 C 0.13 3.19 5.59 -106.80 -0.60 2.59 16 18 C -0.45 -11.10 8.95 -37.74 -0.34 -11.44 16 19 H 0.09 2.04 8.02 -52.49 -0.42 1.61 16 20 C 0.09 2.00 4.78 -17.31 -0.08 1.92 16 21 N -0.75 -17.90 11.70 55.56 0.65 -17.25 16 22 Si 0.90 16.89 29.66 -169.99 -5.04 11.85 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 25 H -0.25 -4.79 7.11 56.52 0.40 -4.38 16 26 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 27 C -0.03 -0.62 9.66 -39.61 -0.38 -1.00 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.10 0.94 7.85 -52.49 -0.41 0.53 16 30 H 0.11 1.70 6.42 -52.49 -0.34 1.36 16 31 H 0.07 0.85 7.78 -51.93 -0.40 0.44 16 32 H 0.11 1.81 5.37 -51.92 -0.28 1.53 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.09 1.35 7.35 -51.93 -0.38 0.97 16 35 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.10 1.94 4.20 -52.49 -0.22 1.72 16 41 H 0.11 2.61 6.42 -52.49 -0.34 2.27 16 42 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 43 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 44 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -28.57 373.97 -8.65 -37.22 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.73 Total: 11.28 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -3.88 Total: -23.35 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.22 Total: -27.63 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.15 Total: -15.01 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.04 Total: 11.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.57 -8.65 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352598990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.766 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds