Wall clock time and date at job start Tue Mar 31 2020 14:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99745 * 2 1 4 4 N 1.46498 * 109.47236 * 127.25664 * 3 2 1 5 5 C 1.46494 * 120.00036 * 277.12797 * 4 3 2 6 6 C 1.53003 * 109.46868 * 270.00007 * 5 4 3 7 7 C 1.50700 * 109.47236 * 180.02562 * 6 5 4 8 8 C 1.34513 * 125.78872 * 89.71275 * 7 6 5 9 9 C 1.41391 * 106.84243 * 179.89260 * 8 7 6 10 10 C 1.34514 * 106.83295 * 0.37056 * 9 8 7 11 11 O 1.34298 * 108.42797 * 359.77307 * 10 9 8 12 12 C 1.34779 * 119.99814 * 97.12254 * 4 3 2 13 13 O 1.21590 * 120.00031 * 185.44442 * 12 4 3 14 14 C 1.47635 * 120.00174 * 5.17103 * 12 4 3 15 15 C 1.40016 * 119.89516 * 309.86500 * 14 12 4 16 16 C 1.36320 * 120.10353 * 179.75966 * 15 14 12 17 17 C 1.40884 * 119.89299 * 0.53638 * 16 15 14 18 18 C 1.41117 * 120.10186 * 179.69564 * 17 16 15 19 19 H 1.07990 * 119.99989 * 159.58243 * 18 17 16 20 20 C 1.40230 * 119.99942 * 339.58030 * 18 17 16 21 21 N 1.30647 * 119.99799 * 327.04300 * 20 18 17 22 22 Si 1.86793 * 120.00017 * 147.04101 * 20 18 17 23 23 H 1.48500 * 109.47078 * 94.99162 * 22 20 18 24 24 H 1.48499 * 109.47201 * 214.99238 * 22 20 18 25 25 H 1.48501 * 109.47105 * 334.99487 * 22 20 18 26 26 C 1.40887 * 119.79643 * 359.72028 * 17 16 15 27 27 C 1.36319 * 119.88646 * 359.97438 * 26 17 16 28 28 H 1.07997 * 120.00002 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00164 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47158 * 7.25267 * 3 2 1 32 32 H 1.09007 * 109.46467 * 247.25754 * 3 2 1 33 33 H 1.08998 * 109.47401 * 29.99663 * 5 4 3 34 34 H 1.09001 * 109.47510 * 150.00418 * 5 4 3 35 35 H 1.09005 * 109.47095 * 299.99702 * 6 5 4 36 36 H 1.08997 * 109.47190 * 59.99857 * 6 5 4 37 37 H 1.08003 * 126.58339 * 0.02840 * 8 7 6 38 38 H 1.07991 * 126.58487 * 180.16866 * 9 8 7 39 39 H 1.08002 * 125.78643 * 179.75397 * 10 9 8 40 40 H 1.07991 * 119.94537 * 0.02562 * 15 14 12 41 41 H 1.08000 * 120.05039 * 180.23784 * 16 15 14 42 42 H 0.97003 * 119.99555 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.05604 * 179.97438 * 26 17 16 44 44 H 1.08003 * 119.94026 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0317 1.3101 1.0993 5 6 2.6014 1.6691 2.4529 6 6 2.7528 3.1784 2.6526 7 6 2.3108 3.5477 4.0452 8 6 3.0969 3.5851 5.1360 9 6 2.2773 3.9806 6.2182 10 6 1.0377 4.1532 5.7253 11 8 1.0639 3.8896 4.4087 12 6 4.3184 0.9842 0.8654 13 8 5.1003 0.8917 1.7920 14 6 4.7773 0.7337 -0.5153 15 6 4.0644 -0.1463 -1.3387 16 6 4.4815 -0.3770 -2.6158 17 6 5.6381 0.2629 -3.1032 18 6 6.0774 0.0223 -4.4225 19 1 6.7367 0.7259 -4.9088 20 6 5.6579 -1.1304 -5.1019 21 7 5.4448 -2.2370 -4.4410 22 14 5.4038 -1.0837 -6.9519 23 1 6.6347 -1.5597 -7.6328 24 1 4.2643 -1.9630 -7.3174 25 1 5.1105 0.3089 -7.3762 26 6 6.3551 1.1434 -2.2692 27 6 5.9268 1.3726 -0.9955 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3623 2.1295 0.1297 32 1 2.5891 1.4211 -0.9479 33 1 1.5573 1.3875 2.5889 34 1 3.2176 1.1426 3.1817 35 1 3.7970 3.4600 2.5166 36 1 2.1367 3.7050 1.9238 37 1 4.1521 3.3588 5.1771 38 1 2.5864 4.1148 7.2442 39 1 0.1686 4.4527 6.2923 40 1 3.1804 -0.6397 -0.9627 41 1 3.9288 -1.0530 -3.2515 42 1 5.1549 -3.0345 -4.9111 43 1 7.2426 1.6359 -2.6383 44 1 6.4760 2.0471 -0.3553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352598990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:30 Heat of formation + Delta-G solvation = 7.718301 kcal Electronic energy + Delta-G solvation = -26465.009958 eV Core-core repulsion = 22734.821746 eV Total energy + Delta-G solvation = -3730.188213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -43.48403 -41.17077 -38.98200 -37.43670 -35.79092 -35.02952 -33.87594 -33.05523 -31.92325 -31.36080 -29.15844 -27.67078 -26.89891 -24.91188 -23.04485 -22.87672 -22.66545 -21.32754 -21.31703 -20.01256 -19.32914 -18.31451 -18.20189 -17.62590 -17.11728 -16.79370 -16.38503 -15.94099 -15.82492 -15.57455 -15.28905 -14.85481 -14.58165 -14.33070 -14.24942 -13.85596 -13.75756 -13.72587 -13.60358 -13.42609 -13.33713 -13.17300 -12.93794 -12.77735 -12.63208 -12.29518 -12.19035 -12.00912 -11.85425 -11.29760 -10.97809 -10.86828 -10.67421 -10.35709 -9.87757 -9.49625 -9.47984 -9.29447 -8.89583 -6.40206 0.62498 0.77293 1.15317 1.28331 1.36956 1.43275 1.55982 1.68346 1.89461 2.04275 2.16107 2.33556 2.60222 3.64637 3.70756 3.87095 3.97479 4.07266 4.13277 4.15079 4.19266 4.31188 4.35844 4.42118 4.43125 4.57795 4.72358 4.82570 4.90047 4.95740 4.96888 5.03621 5.05819 5.06831 5.18292 5.24084 5.30785 5.49568 5.59971 5.60809 5.72330 5.82291 5.88797 5.97369 6.04129 6.20763 6.23831 6.44225 6.55040 6.79018 6.92755 7.30389 8.08097 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002639 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.724415 B =10607.560908 C =11321.976652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.193 4.193 3 C 0.131 3.869 4 N -0.602 5.602 5 C 0.126 3.874 6 C -0.045 4.045 7 C -0.020 4.020 8 C -0.225 4.225 9 C -0.228 4.228 10 C -0.038 4.038 11 O -0.186 6.186 12 C 0.579 3.421 13 O -0.595 6.595 14 C -0.293 4.293 15 C -0.055 4.055 16 C -0.210 4.210 17 C 0.102 3.898 18 C -0.483 4.483 19 H 0.086 0.914 20 C 0.051 3.949 21 N -0.783 5.783 22 Si 0.976 3.024 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.255 1.255 26 C -0.256 4.256 27 C -0.035 4.035 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.242 0.758 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.299 0.701 43 H 0.101 0.899 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 7.723 9.988 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.212 4.212 3 C 0.010 3.990 4 N -0.332 5.332 5 C 0.004 3.996 6 C -0.083 4.083 7 C -0.070 4.070 8 C -0.244 4.244 9 C -0.247 4.247 10 C -0.105 4.105 11 O -0.083 6.083 12 C 0.372 3.628 13 O -0.477 6.477 14 C -0.297 4.297 15 C -0.073 4.073 16 C -0.229 4.229 17 C 0.099 3.901 18 C -0.509 4.509 19 H 0.104 0.896 20 C -0.171 4.171 21 N -0.404 5.404 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.179 1.179 26 C -0.275 4.275 27 C -0.054 4.054 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.258 0.742 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.547 7.426 10.282 18.558 hybrid contribution 0.725 -0.393 -0.457 0.943 sum -12.822 7.033 9.826 17.619 Atomic orbital electron populations 1.24048 0.94705 1.03395 0.97434 1.23305 0.96961 0.98171 1.02792 1.20942 0.91212 0.96335 0.90549 1.47848 1.08038 1.67758 1.09587 1.21341 1.01264 0.93727 0.83286 1.20355 1.02003 0.96671 0.89286 1.22239 0.82527 1.05083 0.97153 1.21901 1.01604 1.07842 0.93072 1.22152 0.93740 1.07557 1.01208 1.24826 1.01127 1.03999 0.80532 1.84005 1.30604 1.67105 1.26576 1.18652 0.81472 0.74052 0.88599 1.90637 1.55520 1.54800 1.46729 1.18959 1.03678 1.12381 0.94694 1.20901 0.97780 0.95524 0.93135 1.20734 0.99236 1.06424 0.96510 1.17993 0.90306 0.89370 0.92468 1.20002 1.26678 1.05781 0.98457 0.89637 1.26928 0.90802 0.93188 1.06226 1.69851 1.27324 1.01137 1.42122 0.85287 0.79461 0.80123 0.75567 1.18414 1.18480 1.17868 1.20720 1.02810 1.08981 0.95032 1.20361 0.93557 0.96680 0.94812 0.87246 0.86396 0.88761 0.87707 0.89347 0.88455 0.91597 0.90120 0.88546 0.83926 0.81525 0.74193 0.86003 0.88265 0.88944 0.88043 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 14.32 67.78 0.97 -2.04 16 2 C -0.19 -4.88 8.58 25.65 0.22 -4.66 16 3 C 0.13 3.55 5.34 85.64 0.46 4.01 16 4 N -0.60 -19.25 2.46 -829.79 -2.04 -21.29 16 5 C 0.13 3.44 5.44 86.38 0.47 3.92 16 6 C -0.04 -1.11 6.07 29.85 0.18 -0.92 16 7 C -0.02 -0.48 6.58 24.83 0.16 -0.31 16 8 C -0.22 -5.42 10.81 22.19 0.24 -5.18 16 9 C -0.23 -4.30 10.91 22.19 0.24 -4.05 16 10 C -0.04 -0.62 12.09 66.97 0.81 0.19 16 11 O -0.19 -4.09 10.65 -2.46 -0.03 -4.12 16 12 C 0.58 24.24 7.20 86.72 0.62 24.86 16 13 O -0.59 -28.47 16.59 -4.00 -0.07 -28.53 16 14 C -0.29 -13.30 4.91 -19.94 -0.10 -13.40 16 15 C -0.05 -2.46 7.45 22.25 0.17 -2.29 16 16 C -0.21 -10.42 8.74 22.47 0.20 -10.22 16 17 C 0.10 5.28 5.59 -21.28 -0.12 5.16 16 18 C -0.48 -24.49 8.95 23.46 0.21 -24.28 16 19 H 0.09 4.18 8.02 -2.92 -0.02 4.16 16 20 C 0.05 2.38 4.78 85.35 0.41 2.78 16 21 N -0.78 -37.88 11.70 21.87 0.26 -37.62 16 22 Si 0.98 34.48 29.66 68.60 2.03 36.51 16 23 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 24 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 25 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 26 C -0.26 -12.67 9.73 22.47 0.22 -12.45 16 27 C -0.04 -1.65 9.66 22.25 0.21 -1.44 16 28 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.12 1.75 7.85 -2.91 -0.02 1.73 16 30 H 0.09 2.76 6.42 -2.91 -0.02 2.74 16 31 H 0.10 2.14 7.78 -2.39 -0.02 2.13 16 32 H 0.09 2.84 5.37 -2.38 -0.01 2.83 16 33 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 34 H 0.07 2.09 7.35 -2.39 -0.02 2.07 16 35 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.17 2.30 8.06 -2.92 -0.02 2.28 16 39 H 0.24 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.12 4.82 4.20 -2.92 -0.01 4.80 16 41 H 0.10 5.00 6.42 -2.91 -0.02 4.98 16 42 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 43 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -64.28 373.97 6.74 -57.54 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 1.01 Total: 37.84 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 5.58 Total: -40.33 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -1.79 Total: -58.91 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.09 Total: -32.65 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -64.28 6.74 -57.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352598990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.259 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds