Wall clock time and date at job start Tue Mar 31 2020 16:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46497 * 109.46795 * 179.97438 * 5 4 2 7 7 S 1.65603 * 119.99585 * 164.99450 * 6 5 4 8 8 O 1.42100 * 104.27637 * 181.06954 * 7 6 5 9 9 O 1.42095 * 104.28284 * 308.93097 * 7 6 5 10 10 C 1.81405 * 104.44716 * 65.00641 * 7 6 5 11 11 C 1.53000 * 109.47125 * 179.97438 * 10 7 6 12 12 C 1.52999 * 109.47355 * 179.97438 * 11 10 7 13 13 C 1.50696 * 109.47549 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99544 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00062 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99988 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46792 * 90.00033 * 17 15 13 19 19 H 1.48504 * 109.47004 * 210.00034 * 17 15 13 20 20 H 1.48500 * 109.47185 * 329.99561 * 17 15 13 21 21 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 22 22 C 1.38237 * 119.99747 * 59.72563 * 21 2 1 23 23 C 1.38240 * 119.99788 * 179.81066 * 22 21 2 24 24 C 1.38236 * 119.99657 * 0.39831 * 23 22 21 25 25 C 1.38230 * 120.00403 * 359.85459 * 24 23 22 26 26 C 1.38232 * 120.00112 * 240.00114 * 21 2 1 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 33 33 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 34 34 H 0.96996 * 120.00821 * 344.99965 * 6 5 4 35 35 H 1.09000 * 109.46597 * 299.99679 * 10 7 6 36 36 H 1.08993 * 109.47195 * 59.99563 * 10 7 6 37 37 H 1.09004 * 109.47098 * 299.99924 * 11 10 7 38 38 H 1.09006 * 109.47159 * 59.99537 * 11 10 7 39 39 H 1.09000 * 109.46850 * 300.00171 * 12 11 10 40 40 H 1.09006 * 109.46998 * 59.99888 * 12 11 10 41 41 H 0.96997 * 120.00287 * 179.97438 * 16 15 13 42 42 H 1.08003 * 120.00234 * 0.02562 * 22 21 2 43 43 H 1.07995 * 119.99993 * 180.23158 * 23 22 21 44 44 H 1.08005 * 119.99783 * 179.83592 * 24 23 22 45 45 H 1.08000 * 120.00473 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.99991 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1242 -0.6214 -3.6914 7 16 1.5313 -0.2141 -5.1830 8 8 2.2024 -1.0902 -6.0781 9 8 0.1200 -0.2675 -5.0257 10 6 2.0793 1.4966 -5.4361 11 6 1.5883 1.9933 -6.7974 12 6 2.0500 3.4363 -7.0107 13 6 1.5669 3.9254 -8.3517 14 1 0.9880 3.2724 -8.9880 15 6 1.8629 5.2067 -8.7657 16 7 1.4409 5.6337 -9.9359 17 14 2.8635 6.3363 -7.6647 18 1 4.3078 6.1709 -7.9679 19 1 2.4647 7.7458 -7.9086 20 1 2.6134 5.9902 -6.2424 21 6 2.0323 -0.7104 1.2305 22 6 1.6936 -2.0322 1.4521 23 6 2.1576 -2.6850 2.5788 24 6 2.9535 -2.0136 3.4881 25 6 3.2878 -0.6903 3.2691 26 6 2.8270 -0.0386 2.1405 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 0.5490 0.1471 -2.5390 33 1 2.0700 1.0675 -2.4494 34 1 2.7952 -1.3172 -3.6097 35 1 1.6700 2.1295 -4.6487 36 1 3.1681 1.5375 -5.4059 37 1 1.9980 1.3603 -7.5845 38 1 0.4994 1.9523 -6.8280 39 1 1.6399 4.0690 -6.2235 40 1 3.1388 3.4777 -6.9799 41 1 1.6488 6.5352 -10.2271 42 1 1.0694 -2.5559 0.7432 43 1 1.8961 -3.7187 2.7501 44 1 3.3138 -2.5228 4.3697 45 1 3.9092 -0.1656 3.9797 46 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354452611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:47 Heat of formation + Delta-G solvation = -78.578211 kcal Electronic energy + Delta-G solvation = -24499.822756 eV Core-core repulsion = 20901.336397 eV Total energy + Delta-G solvation = -3598.486359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -39.94147 -37.24635 -36.83381 -35.80396 -34.81848 -34.44325 -32.22017 -31.27407 -30.29153 -28.39181 -28.22843 -24.76703 -23.62427 -23.16359 -22.34229 -20.60966 -20.24898 -19.22309 -17.48048 -17.36964 -16.91595 -16.47123 -15.97250 -15.74735 -15.52748 -15.12339 -14.95508 -14.32000 -14.20426 -14.03412 -13.93878 -13.65020 -13.35325 -12.93491 -12.68836 -12.48861 -12.34646 -12.20973 -12.14222 -11.93483 -11.87032 -11.82115 -11.65484 -11.57334 -11.35729 -11.01693 -11.00020 -10.95757 -10.82543 -10.10167 -9.92837 -9.82148 -9.39996 -9.27733 -9.25891 -9.04968 -8.59476 -6.09059 -4.08387 0.39351 0.99687 1.04315 2.78791 3.25843 3.33352 3.35207 3.42542 3.88129 4.16708 4.31139 4.38144 4.39505 4.63747 4.66582 4.67603 4.73675 4.79497 4.97925 5.03076 5.05073 5.11300 5.13692 5.21981 5.23514 5.25159 5.38524 5.55666 5.62552 5.63364 5.69951 5.74873 5.76387 5.90551 5.93594 6.12616 6.13495 6.16493 6.25752 6.29925 6.64715 6.66114 6.83984 7.11681 7.25686 7.70327 8.46959 8.95371 9.51959 11.04193 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.002273 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.306112 B =12315.410828 C =13390.420468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.053 4.053 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.110 3.890 6 N -1.125 6.125 7 S 2.604 3.396 8 O -0.962 6.962 9 O -0.960 6.960 10 C -0.616 4.616 11 C -0.098 4.098 12 C -0.004 4.004 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.073 4.073 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.414 0.586 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -14.597 28.437 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.016 4.016 6 N -0.884 5.884 7 S 2.699 3.301 8 O -0.952 6.952 9 O -0.950 6.950 10 C -0.747 4.747 11 C -0.137 4.137 12 C -0.043 4.043 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.074 4.074 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.248 0.752 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.538 -14.883 27.748 31.590 hybrid contribution 1.288 1.003 0.861 1.846 sum 3.826 -13.881 28.610 32.029 Atomic orbital electron populations 1.21962 0.93805 1.02573 1.02479 1.20155 0.96434 0.99305 0.91298 0.89826 1.21829 1.01792 0.99713 0.92272 1.21421 1.00272 0.95498 0.84425 1.55708 1.58355 1.51444 1.22847 1.05184 0.74714 0.77655 0.72520 1.93587 1.76026 1.62695 1.62905 1.93572 1.29722 1.86811 1.84877 1.30598 1.12283 1.22852 1.08988 1.21314 1.01201 1.01152 0.90055 1.19530 0.96248 0.90566 0.97967 1.21134 1.34961 0.99169 1.01232 0.90727 1.25034 0.95537 0.97951 0.94955 1.69913 1.46176 1.18115 1.19648 0.86767 0.80703 0.80071 0.81647 1.20242 1.21272 1.19068 1.19862 0.97271 0.94254 0.95968 1.21044 1.00102 0.94401 0.97681 1.21163 0.98014 0.99896 0.94658 1.21154 0.98892 0.94948 0.99491 1.21154 1.00006 0.94978 0.97603 1.21113 0.98036 0.99952 0.94435 0.92343 0.91455 0.92217 0.90924 0.90729 0.89783 0.91647 0.75187 0.85537 0.85299 0.90977 0.90941 0.96191 0.96632 0.92628 0.86012 0.86171 0.86292 0.86167 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.76 37.16 0.33 -0.68 16 2 C -0.05 -0.34 2.56 -91.77 -0.24 -0.58 16 3 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 4 C -0.12 -0.79 4.57 -26.73 -0.12 -0.91 16 5 C 0.11 0.90 5.89 -4.04 -0.02 0.87 16 6 N -1.13 -10.79 5.89 -10.61 -0.06 -10.85 16 7 S 2.60 35.68 5.46 -107.50 -0.59 35.09 16 8 O -0.96 -16.24 18.08 -57.54 -1.04 -17.28 16 9 O -0.96 -16.04 17.50 -57.54 -1.01 -17.05 16 10 C -0.62 -8.60 6.07 37.16 0.23 -8.38 16 11 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 12 C 0.00 -0.10 4.04 -27.89 -0.11 -0.22 16 13 C -0.53 -14.96 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 17 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 21 C -0.07 -0.53 4.78 -104.62 -0.50 -1.03 16 22 C -0.11 -0.82 8.76 -39.58 -0.35 -1.17 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.13 -0.84 10.05 -39.58 -0.40 -1.24 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.12 -0.84 9.67 -39.58 -0.38 -1.22 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.50 7.58 -51.93 -0.39 0.11 16 32 H 0.08 0.73 6.12 -51.93 -0.32 0.41 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.41 3.26 8.62 -34.47 -0.30 2.97 16 35 H 0.13 1.50 8.14 -51.92 -0.42 1.07 16 36 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 0.76 7.16 -52.48 -0.38 0.38 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.70 7.95 -52.48 -0.42 0.29 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -35.98 386.12 -11.22 -47.20 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.52 Total: -0.26 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -2.93 Total: -32.45 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.71 Total: -37.73 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -2.05 Total: -34.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 35.68 SS G_CDS: -0.59 Total: 35.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.98 -11.22 -47.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354452611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.381 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds