Wall clock time and date at job start Tue Mar 31 2020 16:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46497 * 109.46795 * 179.97438 * 5 4 2 7 7 S 1.65603 * 119.99585 * 164.99450 * 6 5 4 8 8 O 1.42100 * 104.27637 * 181.06954 * 7 6 5 9 9 O 1.42095 * 104.28284 * 308.93097 * 7 6 5 10 10 C 1.81405 * 104.44716 * 65.00641 * 7 6 5 11 11 C 1.53000 * 109.47125 * 179.97438 * 10 7 6 12 12 C 1.52999 * 109.47355 * 179.97438 * 11 10 7 13 13 C 1.50696 * 109.47549 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99544 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00062 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99988 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46792 * 90.00033 * 17 15 13 19 19 H 1.48504 * 109.47004 * 210.00034 * 17 15 13 20 20 H 1.48500 * 109.47185 * 329.99561 * 17 15 13 21 21 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 22 22 C 1.38237 * 119.99747 * 59.72563 * 21 2 1 23 23 C 1.38240 * 119.99788 * 179.81066 * 22 21 2 24 24 C 1.38236 * 119.99657 * 0.39831 * 23 22 21 25 25 C 1.38230 * 120.00403 * 359.85459 * 24 23 22 26 26 C 1.38232 * 120.00112 * 240.00114 * 21 2 1 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 33 33 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 34 34 H 0.96996 * 120.00821 * 344.99965 * 6 5 4 35 35 H 1.09000 * 109.46597 * 299.99679 * 10 7 6 36 36 H 1.08993 * 109.47195 * 59.99563 * 10 7 6 37 37 H 1.09004 * 109.47098 * 299.99924 * 11 10 7 38 38 H 1.09006 * 109.47159 * 59.99537 * 11 10 7 39 39 H 1.09000 * 109.46850 * 300.00171 * 12 11 10 40 40 H 1.09006 * 109.46998 * 59.99888 * 12 11 10 41 41 H 0.96997 * 120.00287 * 179.97438 * 16 15 13 42 42 H 1.08003 * 120.00234 * 0.02562 * 22 21 2 43 43 H 1.07995 * 119.99993 * 180.23158 * 23 22 21 44 44 H 1.08005 * 119.99783 * 179.83592 * 24 23 22 45 45 H 1.08000 * 120.00473 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.99991 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1242 -0.6214 -3.6914 7 16 1.5313 -0.2141 -5.1830 8 8 2.2024 -1.0902 -6.0781 9 8 0.1200 -0.2675 -5.0257 10 6 2.0793 1.4966 -5.4361 11 6 1.5883 1.9933 -6.7974 12 6 2.0500 3.4363 -7.0107 13 6 1.5669 3.9254 -8.3517 14 1 0.9880 3.2724 -8.9880 15 6 1.8629 5.2067 -8.7657 16 7 1.4409 5.6337 -9.9359 17 14 2.8635 6.3363 -7.6647 18 1 4.3078 6.1709 -7.9679 19 1 2.4647 7.7458 -7.9086 20 1 2.6134 5.9902 -6.2424 21 6 2.0323 -0.7104 1.2305 22 6 1.6936 -2.0322 1.4521 23 6 2.1576 -2.6850 2.5788 24 6 2.9535 -2.0136 3.4881 25 6 3.2878 -0.6903 3.2691 26 6 2.8270 -0.0386 2.1405 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 0.5490 0.1471 -2.5390 33 1 2.0700 1.0675 -2.4494 34 1 2.7952 -1.3172 -3.6097 35 1 1.6700 2.1295 -4.6487 36 1 3.1681 1.5375 -5.4059 37 1 1.9980 1.3603 -7.5845 38 1 0.4994 1.9523 -6.8280 39 1 1.6399 4.0690 -6.2235 40 1 3.1388 3.4777 -6.9799 41 1 1.6488 6.5352 -10.2271 42 1 1.0694 -2.5559 0.7432 43 1 1.8961 -3.7187 2.7501 44 1 3.3138 -2.5228 4.3697 45 1 3.9092 -0.1656 3.9797 46 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354452611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:42 Heat of formation + Delta-G solvation = -102.612226 kcal Electronic energy + Delta-G solvation = -24500.864949 eV Core-core repulsion = 20901.336397 eV Total energy + Delta-G solvation = -3599.528552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.41605 -38.22378 -37.66235 -37.01847 -36.49176 -35.09883 -34.23924 -31.74062 -30.82431 -30.14290 -28.80196 -25.38300 -25.31980 -23.66256 -22.86961 -22.24799 -20.87744 -20.23135 -18.97608 -18.50597 -17.91589 -17.34967 -17.17775 -16.45689 -16.29147 -16.11525 -15.95315 -15.53100 -15.44715 -14.86093 -14.61558 -14.50468 -14.11577 -14.07651 -13.86904 -13.64454 -13.38674 -13.23708 -13.17457 -13.09868 -13.04128 -12.81511 -12.68756 -12.54258 -12.46986 -12.11617 -11.90529 -11.83662 -11.63388 -11.49102 -11.45072 -11.39580 -11.18849 -10.77118 -10.31241 -9.76284 -9.54139 -8.29437 -6.35489 -0.70971 0.50948 0.55699 1.37292 1.39994 1.51607 1.83159 2.36847 2.79336 2.93771 3.05608 3.26451 3.66798 3.71147 3.86947 3.95792 4.13910 4.17135 4.19973 4.25394 4.34780 4.35689 4.48672 4.57786 4.62574 4.66892 4.67279 4.73769 4.80559 4.87723 4.97315 5.05967 5.11282 5.12071 5.23345 5.25651 5.35192 5.37886 5.43330 5.47040 5.63175 5.65242 5.69052 5.81211 6.14932 6.18703 6.25694 6.72877 7.29095 8.87488 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.002273 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.306112 B =12315.410828 C =13390.420468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 H 0.093 0.907 4 C -0.111 4.111 5 C 0.099 3.901 6 N -1.109 6.109 7 S 2.626 3.374 8 O -0.997 6.997 9 O -0.993 6.993 10 C -0.610 4.610 11 C -0.105 4.105 12 C -0.005 4.005 13 C -0.544 4.544 14 H 0.029 0.971 15 C -0.001 4.001 16 N -0.953 5.953 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.236 1.236 21 C -0.082 4.082 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.425 0.575 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 -14.094 31.631 34.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 H 0.112 0.888 4 C -0.150 4.150 5 C -0.026 4.026 6 N -0.871 5.871 7 S 2.721 3.279 8 O -0.988 6.988 9 O -0.983 6.983 10 C -0.741 4.741 11 C -0.144 4.144 12 C -0.044 4.044 13 C -0.582 4.582 14 H 0.047 0.953 15 C -0.198 4.198 16 N -0.593 5.593 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.159 1.159 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.261 0.739 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.303 -14.416 30.950 34.413 hybrid contribution 0.680 0.773 -0.140 1.039 sum 4.983 -13.643 30.810 34.062 Atomic orbital electron populations 1.21969 0.94164 1.02407 1.02382 1.20125 0.96071 0.99710 0.90828 0.88837 1.21776 1.02204 0.99417 0.91631 1.21701 1.00251 0.96733 0.83945 1.55278 1.58428 1.51698 1.21713 1.04264 0.73681 0.77134 0.72794 1.93537 1.76444 1.63915 1.64871 1.93532 1.31994 1.87201 1.85581 1.30502 1.14104 1.23084 1.06399 1.21184 1.00865 0.99122 0.93246 1.19509 0.96976 0.92859 0.95034 1.21569 1.34399 0.98960 1.03304 0.95304 1.26148 0.96982 1.00016 0.96656 1.70091 1.48200 1.18861 1.22145 0.85568 0.78864 0.77044 0.80620 1.19048 1.21194 1.15941 1.19981 0.97498 0.94370 0.96352 1.21213 1.00455 0.94723 0.98093 1.21416 0.98061 1.00689 0.94677 1.21431 0.98794 0.95196 1.00039 1.21431 1.00142 0.95233 0.97908 1.21347 0.98112 1.00652 0.94586 0.92416 0.91534 0.92488 0.90191 0.90987 0.90392 0.89309 0.73881 0.82613 0.82614 0.92040 0.91863 0.94796 0.95113 0.92467 0.85596 0.84937 0.84776 0.84681 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.76 71.98 0.63 -1.16 16 2 C -0.05 -0.52 2.56 -11.54 -0.03 -0.55 16 3 H 0.09 0.83 7.88 -2.39 -0.02 0.81 16 4 C -0.11 -1.22 4.57 30.60 0.14 -1.08 16 5 C 0.10 1.32 5.89 86.38 0.51 1.83 16 6 N -1.11 -18.41 5.89 -187.48 -1.10 -19.52 16 7 S 2.63 67.91 5.46 -56.49 -0.31 67.61 16 8 O -1.00 -32.96 18.08 -127.65 -2.31 -35.27 16 9 O -0.99 -32.45 17.50 -127.65 -2.23 -34.69 16 10 C -0.61 -15.19 6.07 71.98 0.44 -14.76 16 11 C -0.10 -3.95 5.16 30.59 0.16 -3.79 16 12 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 13 C -0.54 -31.50 9.66 25.60 0.25 -31.25 16 14 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 15 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 16 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 17 Si 0.96 42.92 27.47 68.60 1.88 44.81 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 21 C -0.08 -1.05 4.78 -19.87 -0.09 -1.15 16 22 C -0.13 -1.67 8.76 22.27 0.20 -1.47 16 23 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 24 C -0.14 -1.61 10.05 22.27 0.22 -1.39 16 25 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 26 C -0.13 -1.60 9.67 22.27 0.22 -1.38 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.79 6.57 -2.39 -0.02 0.77 16 29 H 0.06 0.69 7.38 -2.39 -0.02 0.67 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.83 7.58 -2.39 -0.02 0.81 16 32 H 0.08 1.17 6.12 -2.39 -0.01 1.16 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.42 5.59 8.62 -96.75 -0.83 4.76 16 35 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 40 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.13 1.44 7.16 -2.91 -0.02 1.42 16 43 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16 44 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.13 1.24 7.95 -2.91 -0.02 1.21 16 Total: -1.00 -79.62 386.12 -0.04 -79.66 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.07 Total: 15.81 kcal Atomic # 6 Polarization: -62.24 SS G_CDS: 3.66 Total: -58.58 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.80 Total: -79.36 kcal Atomic # 8 Polarization: -65.41 SS G_CDS: -4.54 Total: -69.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 67.91 SS G_CDS: -0.31 Total: 67.61 kcal Total: -79.62 -0.04 -79.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354452611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.948 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds