Wall clock time and date at job start Tue Mar 31 2020 16:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30664 * 120.00145 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46867 * 90.00451 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00308 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00649 * 11 9 7 15 15 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 16 16 C 1.38162 * 120.02611 * 265.00226 * 15 2 1 17 17 C 1.38249 * 120.05792 * 179.97438 * 16 15 2 18 18 C 1.38287 * 120.10759 * 359.97289 * 17 16 15 19 19 C 1.38125 * 120.05787 * 0.02606 * 18 17 16 20 20 C 1.38710 * 120.02822 * 84.71736 * 15 2 1 21 21 O 1.35896 * 120.05579 * 0.02562 * 20 15 2 22 22 C 1.42905 * 117.00021 * 179.97438 * 21 20 15 23 23 C 1.50697 * 109.47247 * 180.02562 * 22 21 20 24 24 C 1.38233 * 120.00067 * 269.72910 * 23 22 21 25 25 C 1.38239 * 120.00103 * 179.76535 * 24 23 22 26 26 C 1.38228 * 119.99845 * 0.50330 * 25 24 23 27 27 C 1.38238 * 120.00127 * 359.74743 * 26 25 24 28 28 C 1.38230 * 119.99901 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 0.96996 * 120.00325 * 179.97438 * 10 9 7 34 34 H 1.08003 * 119.97400 * 359.97244 * 16 15 2 35 35 H 1.08000 * 119.94661 * 179.97438 * 17 16 15 36 36 H 1.07997 * 119.97397 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.02893 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46727 * 299.99613 * 22 21 20 39 39 H 1.08997 * 109.46967 * 59.99615 * 22 21 20 40 40 H 1.07997 * 119.99840 * 359.97438 * 24 23 22 41 41 H 1.08007 * 119.99729 * 180.22748 * 25 24 23 42 42 H 1.08002 * 119.99992 * 179.72488 * 26 25 24 43 43 H 1.08001 * 119.99958 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.99926 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8629 1.1639 2.4104 7 6 2.6459 -0.7054 3.5494 8 1 2.9031 -1.7532 3.5009 9 6 2.7857 -0.0051 4.7542 10 7 2.4750 1.2627 4.8128 11 14 3.4150 -0.8840 6.2777 12 1 4.8953 -0.7799 6.3332 13 1 2.8288 -0.2561 7.4890 14 1 3.0212 -2.3148 6.2219 15 6 2.0323 -0.7104 -1.2305 16 6 2.3611 -2.0509 -1.1691 17 6 2.8215 -2.7034 -2.2976 18 6 2.9537 -2.0166 -3.4905 19 6 2.6264 -0.6763 -3.5571 20 6 2.1595 -0.0204 -2.4270 21 8 1.8318 1.2969 -2.4913 22 6 1.9884 1.9435 -3.7560 23 6 1.5802 3.3891 -3.6351 24 6 0.2701 3.7597 -3.8742 25 6 -0.1054 5.0850 -3.7586 26 6 0.8315 6.0412 -3.4140 27 6 2.1427 5.6714 -3.1800 28 6 2.5170 4.3453 -3.2900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 1.1526 33 1 2.5714 1.7476 5.6473 34 1 2.2583 -2.5896 -0.2386 35 1 3.0783 -3.7512 -2.2474 36 1 3.3132 -2.5285 -4.3709 37 1 2.7302 -0.1403 -4.4889 38 1 3.0316 1.8857 -4.0669 39 1 1.3605 1.4489 -4.4971 40 1 -0.4608 3.0133 -4.1481 41 1 -1.1298 5.3740 -3.9419 42 1 0.5391 7.0774 -3.3280 43 1 2.8748 6.4186 -2.9112 44 1 3.5415 4.0564 -3.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355632817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:15 Heat of formation + Delta-G solvation = -24.856229 kcal Electronic energy + Delta-G solvation = -26574.752423 eV Core-core repulsion = 22843.151673 eV Total energy + Delta-G solvation = -3731.600750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36603 -39.25635 -37.70171 -36.90200 -34.29524 -32.42881 -32.28418 -31.03540 -30.41760 -29.93400 -28.55578 -26.58230 -26.02055 -23.45371 -22.72939 -22.46734 -21.28212 -20.77019 -19.08360 -18.29006 -17.23262 -16.95528 -16.05942 -15.93310 -15.62393 -15.29992 -14.97908 -14.64053 -14.37193 -14.19347 -13.94071 -13.54736 -13.40183 -13.25458 -12.94153 -12.91677 -12.44158 -12.38052 -12.22646 -11.81262 -11.50925 -11.39757 -11.28782 -11.22215 -11.11709 -10.90948 -10.87582 -10.68613 -10.40993 -10.19425 -10.11420 -9.03861 -8.99451 -8.81244 -8.70226 -8.00090 -7.52470 -7.43059 -6.12255 -4.57857 1.08540 1.28514 1.45976 1.57414 3.17626 3.20885 3.24166 3.27578 3.86364 3.89341 4.15152 4.55373 4.62620 4.65736 4.76840 4.86032 4.91453 4.98709 5.02649 5.04539 5.10501 5.19616 5.36603 5.47810 5.49389 5.57453 5.77448 5.80578 5.83778 5.89770 5.93079 6.19624 6.23087 6.28760 6.32989 6.37285 6.42461 6.44899 6.49286 6.63169 6.83931 6.88728 6.90531 6.96853 7.48690 7.52565 8.00114 8.18999 8.39704 9.08395 9.61350 10.67051 10.86561 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.003505 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.493614 B = 7986.177676 C =10017.106703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.197 3.803 3 H 0.089 0.911 4 N -0.762 5.762 5 C 0.557 3.443 6 O -0.578 6.578 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.906 3.094 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.101 4.101 16 C -0.077 4.077 17 C -0.155 4.155 18 C -0.092 4.092 19 C -0.210 4.210 20 C 0.132 3.868 21 O -0.299 6.299 22 C 0.102 3.898 23 C -0.094 4.094 24 C -0.095 4.095 25 C -0.125 4.125 26 C -0.111 4.111 27 C -0.123 4.123 28 C -0.093 4.093 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.377 0.623 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 0.622 -20.522 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.091 3.909 3 H 0.107 0.893 4 N -0.419 5.419 5 C 0.360 3.640 6 O -0.460 6.460 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.103 4.103 16 C -0.095 4.095 17 C -0.173 4.173 18 C -0.110 4.110 19 C -0.229 4.229 20 C 0.087 3.913 21 O -0.212 6.212 22 C 0.027 3.973 23 C -0.094 4.094 24 C -0.113 4.113 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.111 4.111 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.605 1.819 -20.206 20.351 hybrid contribution 0.542 -0.981 0.506 1.229 sum -1.063 0.838 -19.700 19.747 Atomic orbital electron populations 1.22078 0.95947 1.00846 1.01681 1.19185 0.92904 0.96856 0.81935 0.89323 1.46348 1.73260 1.12697 1.09584 1.18197 0.77803 0.86399 0.81570 1.90603 1.54679 1.16354 1.84390 1.20878 1.46779 0.97098 0.93556 0.91549 1.25688 0.93382 0.94446 0.99612 1.70022 1.35296 1.08145 1.26213 0.86405 0.79329 0.80231 0.80957 1.19805 1.20507 1.18949 1.19680 1.02690 0.94010 0.93884 1.20871 0.96975 0.93090 0.98609 1.21009 1.03206 1.00091 0.92983 1.20831 0.98853 0.93579 0.97784 1.21136 1.07667 0.96445 0.97678 1.18765 0.95820 0.82966 0.93769 1.86251 1.81762 1.20303 1.32912 1.21544 1.01010 0.89546 0.85201 1.19484 0.94351 0.93445 1.02152 1.21065 0.95058 0.96404 0.98769 1.21142 0.99610 0.93049 1.00464 1.21225 0.93433 0.99608 0.98678 1.21170 0.96546 0.96122 1.00230 1.21112 0.99656 0.92923 0.97384 0.93148 0.93545 0.91660 0.78940 0.92200 0.85131 0.86065 0.86224 0.85828 0.91314 0.91323 0.85872 0.85834 0.85943 0.85739 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.47 37.16 0.35 -2.52 16 2 C 0.20 4.15 2.51 -69.08 -0.17 3.98 16 3 H 0.09 2.18 7.13 -51.93 -0.37 1.81 16 4 N -0.76 -17.76 4.99 -56.35 -0.28 -18.04 16 5 C 0.56 16.22 7.71 -12.99 -0.10 16.12 16 6 O -0.58 -19.12 14.68 5.20 0.08 -19.04 16 7 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 10 N -0.77 -23.45 11.83 55.55 0.66 -22.80 16 11 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 C -0.10 -1.76 5.07 -104.47 -0.53 -2.29 16 16 C -0.08 -1.17 9.23 -39.61 -0.37 -1.53 16 17 C -0.15 -1.95 10.04 -39.56 -0.40 -2.35 16 18 C -0.09 -1.08 10.04 -39.60 -0.40 -1.48 16 19 C -0.21 -2.67 9.04 -39.43 -0.36 -3.02 16 20 C 0.13 2.07 6.66 -39.22 -0.26 1.81 16 21 O -0.30 -4.73 9.26 -19.41 -0.18 -4.91 16 22 C 0.10 1.19 4.87 36.00 0.18 1.36 16 23 C -0.09 -1.14 5.51 -104.63 -0.58 -1.72 16 24 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 25 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 26 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.09 -1.10 9.70 -39.58 -0.38 -1.49 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.38 7.70 6.19 -40.82 -0.25 7.45 16 33 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 34 H 0.13 1.88 6.07 -52.48 -0.32 1.56 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 38 H 0.07 0.70 7.60 -51.93 -0.39 0.30 16 39 H 0.07 0.66 7.61 -51.93 -0.40 0.26 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -36.18 374.24 -9.98 -46.15 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.84 Total: 10.71 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -5.03 Total: -13.16 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.38 Total: -40.84 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.10 Total: -23.95 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.18 -9.98 -46.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355632817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.296 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds