Wall clock time and date at job start Tue Mar 31 2020 16:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30664 * 120.00145 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46867 * 90.00451 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00308 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00649 * 11 9 7 15 15 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 16 16 C 1.38162 * 120.02611 * 265.00226 * 15 2 1 17 17 C 1.38249 * 120.05792 * 179.97438 * 16 15 2 18 18 C 1.38287 * 120.10759 * 359.97289 * 17 16 15 19 19 C 1.38125 * 120.05787 * 0.02606 * 18 17 16 20 20 C 1.38710 * 120.02822 * 84.71736 * 15 2 1 21 21 O 1.35896 * 120.05579 * 0.02562 * 20 15 2 22 22 C 1.42905 * 117.00021 * 179.97438 * 21 20 15 23 23 C 1.50697 * 109.47247 * 180.02562 * 22 21 20 24 24 C 1.38233 * 120.00067 * 269.72910 * 23 22 21 25 25 C 1.38239 * 120.00103 * 179.76535 * 24 23 22 26 26 C 1.38228 * 119.99845 * 0.50330 * 25 24 23 27 27 C 1.38238 * 120.00127 * 359.74743 * 26 25 24 28 28 C 1.38230 * 119.99901 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 0.96996 * 120.00325 * 179.97438 * 10 9 7 34 34 H 1.08003 * 119.97400 * 359.97244 * 16 15 2 35 35 H 1.08000 * 119.94661 * 179.97438 * 17 16 15 36 36 H 1.07997 * 119.97397 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.02893 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46727 * 299.99613 * 22 21 20 39 39 H 1.08997 * 109.46967 * 59.99615 * 22 21 20 40 40 H 1.07997 * 119.99840 * 359.97438 * 24 23 22 41 41 H 1.08007 * 119.99729 * 180.22748 * 25 24 23 42 42 H 1.08002 * 119.99992 * 179.72488 * 26 25 24 43 43 H 1.08001 * 119.99958 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.99926 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8629 1.1639 2.4104 7 6 2.6459 -0.7054 3.5494 8 1 2.9031 -1.7532 3.5009 9 6 2.7857 -0.0051 4.7542 10 7 2.4750 1.2627 4.8128 11 14 3.4150 -0.8840 6.2777 12 1 4.8953 -0.7799 6.3332 13 1 2.8288 -0.2561 7.4890 14 1 3.0212 -2.3148 6.2219 15 6 2.0323 -0.7104 -1.2305 16 6 2.3611 -2.0509 -1.1691 17 6 2.8215 -2.7034 -2.2976 18 6 2.9537 -2.0166 -3.4905 19 6 2.6264 -0.6763 -3.5571 20 6 2.1595 -0.0204 -2.4270 21 8 1.8318 1.2969 -2.4913 22 6 1.9884 1.9435 -3.7560 23 6 1.5802 3.3891 -3.6351 24 6 0.2701 3.7597 -3.8742 25 6 -0.1054 5.0850 -3.7586 26 6 0.8315 6.0412 -3.4140 27 6 2.1427 5.6714 -3.1800 28 6 2.5170 4.3453 -3.2900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 1.1526 33 1 2.5714 1.7476 5.6473 34 1 2.2583 -2.5896 -0.2386 35 1 3.0783 -3.7512 -2.2474 36 1 3.3132 -2.5285 -4.3709 37 1 2.7302 -0.1403 -4.4889 38 1 3.0316 1.8857 -4.0669 39 1 1.3605 1.4489 -4.4971 40 1 -0.4608 3.0133 -4.1481 41 1 -1.1298 5.3740 -3.9419 42 1 0.5391 7.0774 -3.3280 43 1 2.8748 6.4186 -2.9112 44 1 3.5415 4.0564 -3.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355632817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:14 Heat of formation + Delta-G solvation = -47.324380 kcal Electronic energy + Delta-G solvation = -26575.726716 eV Core-core repulsion = 22843.151673 eV Total energy + Delta-G solvation = -3732.575043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47272 -40.20304 -39.42380 -38.25010 -36.07557 -34.54686 -33.28517 -32.09304 -31.86268 -31.05512 -29.95646 -28.20514 -27.46111 -24.85782 -23.61312 -23.56334 -22.42336 -22.11323 -20.89476 -19.74738 -18.74289 -17.95077 -17.50021 -17.08788 -17.01282 -16.74012 -16.10987 -15.75176 -15.67573 -15.60374 -15.30347 -15.04959 -14.61846 -14.39039 -14.34288 -14.23420 -13.78590 -13.73449 -13.38497 -13.33230 -13.07560 -12.94749 -12.74948 -12.62936 -12.60592 -12.15638 -12.10134 -12.02761 -11.98408 -11.78682 -11.55656 -10.93126 -9.88870 -9.88768 -9.85059 -9.78568 -9.51210 -9.06511 -8.27903 -6.85345 0.22297 0.37644 0.43523 0.51128 1.39652 1.42009 1.57129 2.24941 2.26577 2.48745 2.81603 2.97740 3.09416 3.62052 3.66725 3.73556 3.81120 3.98020 4.05796 4.13349 4.21568 4.22482 4.23805 4.34220 4.46661 4.50346 4.54347 4.57359 4.68458 4.74520 4.77232 4.95256 4.99249 5.06372 5.08088 5.24142 5.31852 5.39287 5.48091 5.49981 5.54328 5.56443 5.60862 5.88243 5.90466 6.02837 6.24181 6.30680 6.49053 6.87036 7.56320 8.51360 8.69111 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.003505 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.493614 B = 7986.177676 C =10017.106703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.204 3.796 3 H 0.039 0.961 4 N -0.749 5.749 5 C 0.539 3.461 6 O -0.631 6.631 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.028 3.972 10 N -0.823 5.823 11 Si 1.000 3.000 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.247 1.247 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.080 4.080 19 C -0.206 4.206 20 C 0.119 3.881 21 O -0.330 6.330 22 C 0.099 3.901 23 C -0.114 4.114 24 C -0.108 4.108 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.135 4.135 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.392 0.608 33 H 0.274 0.726 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -1.850 -22.054 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.098 3.902 3 H 0.057 0.943 4 N -0.405 5.405 5 C 0.343 3.657 6 O -0.518 6.518 7 C -0.610 4.610 8 H 0.106 0.894 9 C -0.187 4.187 10 N -0.453 5.453 11 Si 0.819 3.181 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.170 1.170 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.169 4.169 18 C -0.097 4.097 19 C -0.224 4.224 20 C 0.073 3.927 21 O -0.245 6.245 22 C 0.025 3.975 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.135 4.135 27 C -0.153 4.153 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.894 -0.701 -21.798 21.827 hybrid contribution 0.315 -0.176 0.837 0.911 sum -0.579 -0.877 -20.961 20.987 Atomic orbital electron populations 1.21934 0.95267 1.01643 1.00459 1.19019 0.93473 0.94709 0.82993 0.94292 1.46021 1.72140 1.13245 1.09068 1.18641 0.77605 0.86058 0.83385 1.90554 1.56985 1.18628 1.85640 1.21429 1.47173 0.98282 0.94145 0.89371 1.27006 0.92821 0.95129 1.03753 1.70205 1.36634 1.10618 1.27794 0.84998 0.78812 0.79248 0.75069 1.18618 1.19791 1.17017 1.19409 1.06155 0.95183 0.92802 1.20960 0.97519 0.92222 0.99863 1.21358 1.01831 1.01502 0.92196 1.21346 0.96562 0.93064 0.98755 1.21479 1.06249 0.97092 0.97578 1.18932 0.96445 0.83080 0.94216 1.86216 1.82067 1.20836 1.35364 1.21768 1.02315 0.89207 0.84187 1.19707 0.94972 0.93869 1.02866 1.21343 0.95040 0.97341 0.98856 1.21511 1.00865 0.92784 0.99758 1.21590 0.93114 1.00957 0.97889 1.21474 0.97540 0.96155 1.00144 1.21327 0.99994 0.93747 0.98245 0.91542 0.91549 0.95532 0.77149 0.91644 0.85260 0.82980 0.82210 0.82956 0.90056 0.89042 0.84589 0.83504 0.83541 0.84198 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 9.47 71.98 0.68 -4.89 16 2 C 0.20 9.12 2.51 44.24 0.11 9.23 16 3 H 0.04 2.11 7.13 -2.39 -0.02 2.09 16 4 N -0.75 -36.56 4.99 -450.40 -2.25 -38.81 16 5 C 0.54 33.06 7.71 86.36 0.67 33.73 16 6 O -0.63 -44.71 14.68 -4.33 -0.06 -44.78 16 7 C -0.57 -33.76 9.54 24.83 0.24 -33.52 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.03 1.59 5.50 85.31 0.47 2.06 16 10 N -0.82 -52.20 11.83 21.84 0.26 -51.94 16 11 Si 1.00 42.07 29.56 68.60 2.03 44.09 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 15 C -0.13 -4.72 5.07 -19.77 -0.10 -4.82 16 16 C -0.09 -2.54 9.23 22.25 0.21 -2.33 16 17 C -0.15 -3.28 10.04 22.28 0.22 -3.06 16 18 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 19 C -0.21 -4.62 9.04 22.37 0.20 -4.42 16 20 C 0.12 3.68 6.66 22.51 0.15 3.83 16 21 O -0.33 -10.77 9.26 -92.38 -0.86 -11.63 16 22 C 0.10 2.29 4.87 71.23 0.35 2.63 16 23 C -0.11 -2.83 5.51 -19.87 -0.11 -2.94 16 24 C -0.11 -2.41 9.70 22.27 0.22 -2.19 16 25 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 26 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 27 C -0.14 -2.99 10.05 22.27 0.22 -2.77 16 28 C -0.12 -2.86 9.70 22.27 0.22 -2.65 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.39 16.43 6.19 -92.71 -0.57 15.85 16 33 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 34 H 0.13 3.63 6.07 -2.91 -0.02 3.62 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 38 H 0.08 1.60 7.60 -2.39 -0.02 1.58 16 39 H 0.09 1.62 7.61 -2.39 -0.02 1.60 16 40 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -84.96 374.24 3.97 -80.99 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 0.44 Total: 40.03 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.41 Total: -17.95 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -1.99 Total: -90.75 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.92 Total: -56.41 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -84.96 3.97 -80.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355632817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.664 kcal (2) G-P(sol) polarization free energy of solvation -84.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds