Wall clock time and date at job start Tue Mar 31 2020 16:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35842 * 116.99874 * 2 1 4 4 C 1.38578 * 120.12367 * 0.02562 * 3 2 1 5 5 C 1.38181 * 120.06774 * 179.97438 * 4 3 2 6 6 C 1.38391 * 120.30051 * 0.02562 * 5 4 3 7 7 C 1.38002 * 120.24094 * 359.97438 * 6 5 4 8 8 C 1.39310 * 119.93069 * 0.02562 * 7 6 5 9 9 C 1.48325 * 120.14693 * 179.97438 * 8 7 6 10 10 C 1.39368 * 120.12246 * 129.72763 * 9 8 7 11 11 C 1.38010 * 119.87466 * 179.69666 * 10 9 8 12 12 C 1.38329 * 120.12122 * 0.59463 * 11 10 9 13 13 C 1.50703 * 119.87221 * 179.70084 * 12 11 10 14 14 H 1.08998 * 109.46841 * 159.98294 * 13 12 11 15 15 C 1.53001 * 109.47067 * 279.97691 * 13 12 11 16 16 N 1.46495 * 109.47397 * 39.97782 * 13 12 11 17 17 C 1.34777 * 120.00063 * 155.00245 * 16 13 12 18 18 O 1.21687 * 120.00040 * 359.97438 * 17 16 13 19 19 C 1.46377 * 120.00036 * 180.02562 * 17 16 13 20 20 H 1.07999 * 119.99867 * 353.93216 * 19 17 16 21 21 C 1.40047 * 119.99989 * 173.93965 * 19 17 16 22 22 N 1.30671 * 120.00066 * 6.13862 * 21 19 17 23 23 Si 1.86798 * 119.99824 * 186.14893 * 21 19 17 24 24 H 1.48498 * 109.47350 * 94.98237 * 23 21 19 25 25 H 1.48504 * 109.46972 * 214.98019 * 23 21 19 26 26 H 1.48501 * 109.47320 * 334.97927 * 23 21 19 27 27 C 1.38318 * 120.25153 * 359.68060 * 12 11 10 28 28 C 1.38017 * 120.12667 * 0.02562 * 27 12 11 29 29 H 1.09002 * 109.46726 * 60.00084 * 1 2 3 30 30 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46876 * 300.00122 * 1 2 3 32 32 H 1.08004 * 119.96680 * 359.97399 * 4 3 2 33 33 H 1.07994 * 119.84812 * 180.27947 * 5 4 3 34 34 H 1.08002 * 119.88092 * 179.97438 * 6 5 4 35 35 H 1.08000 * 120.03942 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.06415 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.94102 * 180.29807 * 11 10 9 38 38 H 1.09003 * 109.47278 * 300.00456 * 15 13 12 39 39 H 1.09009 * 109.47026 * 60.00095 * 15 13 12 40 40 H 1.08998 * 109.47390 * 180.02562 * 15 13 12 41 41 H 0.97005 * 119.99970 * 334.99865 * 16 13 12 42 42 H 0.97002 * 119.99824 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.94121 * 180.02562 * 27 12 11 44 44 H 1.07994 * 120.06654 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2934 2.3742 0.0005 5 6 1.9219 3.6048 0.0011 6 6 3.3036 3.6832 0.0005 7 6 4.0650 2.5322 0.0000 8 6 3.4417 1.2864 -0.0005 9 6 4.2554 0.0462 -0.0017 10 6 3.9953 -0.9618 0.9249 11 6 4.7515 -2.1162 0.9152 12 6 5.7740 -2.2686 -0.0040 13 6 6.6006 -3.5287 -0.0052 14 1 7.0933 -3.6390 -0.9711 15 6 7.6561 -3.4473 1.0994 16 7 5.7313 -4.6833 0.2343 17 6 6.0969 -5.9045 -0.2033 18 8 7.1490 -6.0479 -0.7978 19 6 5.2281 -7.0580 0.0355 20 1 4.3435 -6.9506 0.6457 21 6 5.5439 -8.3009 -0.5272 22 7 6.6735 -8.4617 -1.1642 23 14 4.3503 -9.7289 -0.3673 24 1 3.4935 -9.7960 -1.5784 25 1 5.1111 -10.9967 -0.2285 26 1 3.4976 -9.5295 0.8319 27 6 6.0403 -1.2690 -0.9222 28 6 5.2866 -0.1128 -0.9256 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2148 2.3194 0.0005 33 1 1.3322 4.5095 0.0061 34 1 3.7878 4.6486 0.0005 35 1 5.1431 2.5971 -0.0008 36 1 3.2005 -0.8417 1.6463 37 1 4.5477 -2.9002 1.6296 38 1 8.3029 -2.5882 0.9213 39 1 7.1633 -3.3369 2.0655 40 1 8.2543 -4.3585 1.0983 41 1 4.8924 -4.5689 0.7079 42 1 6.8924 -9.3227 -1.5536 43 1 6.8395 -1.3935 -1.6378 44 1 5.4951 0.6668 -1.6432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356840084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:03 Heat of formation + Delta-G solvation = -30.935758 kcal Electronic energy + Delta-G solvation = -26210.927587 eV Core-core repulsion = 22479.063208 eV Total energy + Delta-G solvation = -3731.864379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53451 -39.15370 -37.62628 -37.10509 -34.49428 -32.52006 -31.98845 -30.88081 -30.28548 -29.82175 -28.20956 -27.36365 -26.06298 -23.95497 -22.82683 -21.97738 -21.83452 -20.52013 -19.10912 -18.35889 -17.51065 -16.68594 -16.24521 -15.96167 -15.50020 -15.35141 -14.92793 -14.78727 -14.43821 -14.08466 -13.90531 -13.78381 -13.32454 -13.15877 -13.05995 -12.87538 -12.55925 -12.27963 -12.23284 -11.96862 -11.79951 -11.57328 -11.38613 -11.28127 -11.09704 -10.99471 -10.90099 -10.65684 -10.42534 -10.25731 -10.15822 -9.33438 -8.82441 -8.70033 -8.63947 -7.96719 -7.55601 -7.47589 -6.16119 -4.59941 0.83928 1.19123 1.65137 1.72228 3.07515 3.15998 3.23062 3.26565 3.50508 3.99101 4.14305 4.44543 4.60444 4.62044 4.75154 4.83937 4.89792 4.90876 5.05252 5.11834 5.17294 5.19087 5.23060 5.27490 5.40660 5.60167 5.72742 5.75396 5.79204 5.90250 6.00909 6.08596 6.15619 6.18999 6.23933 6.28852 6.33304 6.48944 6.56340 6.64802 6.73605 6.85029 6.98681 7.16481 7.23489 7.47004 7.97327 8.15211 8.37650 9.06088 9.57871 10.63398 10.82347 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002678 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.173831 B =10451.847987 C =11678.882998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.138 3.862 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.070 4.070 9 C -0.055 4.055 10 C -0.088 4.088 11 C -0.112 4.112 12 C -0.067 4.067 13 C 0.187 3.813 14 H 0.083 0.917 15 C -0.151 4.151 16 N -0.760 5.760 17 C 0.557 3.443 18 O -0.581 6.581 19 C -0.546 4.546 20 H 0.067 0.933 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.115 4.115 28 C -0.105 4.105 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.379 0.621 42 H 0.267 0.733 43 H 0.123 0.877 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 23.230 3.533 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.092 3.908 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.176 4.176 7 C -0.089 4.089 8 C -0.070 4.070 9 C -0.055 4.055 10 C -0.106 4.106 11 C -0.131 4.131 12 C -0.068 4.068 13 C 0.080 3.920 14 H 0.101 0.899 15 C -0.210 4.210 16 N -0.415 5.415 17 C 0.361 3.639 18 O -0.464 6.464 19 C -0.583 4.583 20 H 0.085 0.915 21 C -0.131 4.131 22 N -0.397 5.397 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.133 4.133 28 C -0.123 4.123 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.212 0.788 42 H 0.078 0.922 43 H 0.141 0.859 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.811 22.774 2.985 24.977 hybrid contribution -1.392 -0.440 0.269 1.485 sum -11.203 22.334 3.255 25.198 Atomic orbital electron populations 1.23092 0.78553 1.04247 1.01057 1.86197 1.21062 1.26300 1.88072 1.19063 0.91492 0.84489 0.95718 1.21175 0.99996 0.92279 1.09432 1.20953 0.94711 0.96852 0.97675 1.20986 0.93836 0.98341 1.04457 1.21110 1.00051 0.90555 0.97219 1.18206 0.89444 0.93459 1.05927 1.18457 0.96278 0.93381 0.97350 1.21050 0.98672 0.92832 0.98032 1.20911 0.95698 0.97314 0.99134 1.20331 0.95864 0.95948 0.94660 1.19433 0.90198 0.82947 0.99391 0.89857 1.22149 0.98811 1.01715 0.98348 1.46288 1.23588 1.07282 1.64384 1.18203 0.86297 0.81112 0.78282 1.90589 1.25773 1.84528 1.45468 1.20881 1.10272 0.93020 1.34105 0.91479 1.25692 0.94773 0.99280 0.93399 1.70028 1.20009 1.23671 1.25975 0.86383 0.80779 0.80491 0.79233 1.19842 1.20489 1.18913 1.20942 1.00098 0.93450 0.98806 1.21072 0.95283 0.97723 0.98253 0.92757 0.87987 0.92753 0.85442 0.85935 0.85817 0.85143 0.86331 0.85850 0.93178 0.93239 0.91526 0.78803 0.92178 0.85854 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.60 8.86 -19.24 -0.17 -3.77 16 3 C 0.14 1.60 6.60 -38.87 -0.26 1.34 16 4 C -0.21 -1.94 9.03 -39.48 -0.36 -2.30 16 5 C -0.08 -0.69 10.03 -39.55 -0.40 -1.09 16 6 C -0.16 -1.35 10.03 -39.61 -0.40 -1.74 16 7 C -0.07 -0.72 9.51 -39.27 -0.37 -1.09 16 8 C -0.07 -0.84 5.48 -104.76 -0.57 -1.42 16 9 C -0.05 -0.74 5.27 -104.91 -0.55 -1.30 16 10 C -0.09 -1.24 8.79 -39.24 -0.34 -1.59 16 11 C -0.11 -1.72 9.04 -39.63 -0.36 -2.08 16 12 C -0.07 -1.12 4.96 -104.56 -0.52 -1.64 16 13 C 0.19 3.70 2.77 -69.08 -0.19 3.50 16 14 H 0.08 1.85 7.43 -51.93 -0.39 1.46 16 15 C -0.15 -2.76 9.46 37.16 0.35 -2.40 16 16 N -0.76 -17.34 5.02 -56.35 -0.28 -17.62 16 17 C 0.56 15.97 7.71 -12.99 -0.10 15.87 16 18 O -0.58 -18.81 14.71 5.20 0.08 -18.73 16 19 C -0.55 -15.60 9.53 -35.63 -0.34 -15.94 16 20 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 21 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 22 N -0.77 -23.24 11.85 55.55 0.66 -22.58 16 23 Si 0.91 20.38 29.56 -169.99 -5.03 15.35 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 27 C -0.11 -1.71 9.65 -39.63 -0.38 -2.09 16 28 C -0.11 -1.41 9.51 -39.24 -0.37 -1.79 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.13 0.90 6.30 -52.48 -0.33 0.57 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 36 H 0.12 1.55 7.71 -52.49 -0.40 1.14 16 37 H 0.12 1.81 6.90 -52.48 -0.36 1.45 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.38 7.78 6.84 -40.82 -0.28 7.50 16 42 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 43 H 0.12 1.69 8.03 -52.49 -0.42 1.27 16 44 H 0.12 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -35.46 373.46 -9.29 -44.75 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.91 Total: 9.14 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -4.27 Total: -12.17 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.38 Total: -40.20 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.09 Total: -22.50 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.46 -9.29 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356840084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.818 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds