Wall clock time and date at job start Tue Mar 31 2020 16:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35842 * 116.99874 * 2 1 4 4 C 1.38578 * 120.12367 * 0.02562 * 3 2 1 5 5 C 1.38181 * 120.06774 * 179.97438 * 4 3 2 6 6 C 1.38391 * 120.30051 * 0.02562 * 5 4 3 7 7 C 1.38002 * 120.24094 * 359.97438 * 6 5 4 8 8 C 1.39310 * 119.93069 * 0.02562 * 7 6 5 9 9 C 1.48325 * 120.14693 * 179.97438 * 8 7 6 10 10 C 1.39368 * 120.12246 * 129.72763 * 9 8 7 11 11 C 1.38010 * 119.87466 * 179.69666 * 10 9 8 12 12 C 1.38329 * 120.12122 * 0.59463 * 11 10 9 13 13 C 1.50703 * 119.87221 * 179.70084 * 12 11 10 14 14 H 1.08998 * 109.46841 * 159.98294 * 13 12 11 15 15 C 1.53001 * 109.47067 * 279.97691 * 13 12 11 16 16 N 1.46495 * 109.47397 * 39.97782 * 13 12 11 17 17 C 1.34777 * 120.00063 * 155.00245 * 16 13 12 18 18 O 1.21687 * 120.00040 * 359.97438 * 17 16 13 19 19 C 1.46377 * 120.00036 * 180.02562 * 17 16 13 20 20 H 1.07999 * 119.99867 * 353.93216 * 19 17 16 21 21 C 1.40047 * 119.99989 * 173.93965 * 19 17 16 22 22 N 1.30671 * 120.00066 * 6.13862 * 21 19 17 23 23 Si 1.86798 * 119.99824 * 186.14893 * 21 19 17 24 24 H 1.48498 * 109.47350 * 94.98237 * 23 21 19 25 25 H 1.48504 * 109.46972 * 214.98019 * 23 21 19 26 26 H 1.48501 * 109.47320 * 334.97927 * 23 21 19 27 27 C 1.38318 * 120.25153 * 359.68060 * 12 11 10 28 28 C 1.38017 * 120.12667 * 0.02562 * 27 12 11 29 29 H 1.09002 * 109.46726 * 60.00084 * 1 2 3 30 30 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46876 * 300.00122 * 1 2 3 32 32 H 1.08004 * 119.96680 * 359.97399 * 4 3 2 33 33 H 1.07994 * 119.84812 * 180.27947 * 5 4 3 34 34 H 1.08002 * 119.88092 * 179.97438 * 6 5 4 35 35 H 1.08000 * 120.03942 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.06415 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.94102 * 180.29807 * 11 10 9 38 38 H 1.09003 * 109.47278 * 300.00456 * 15 13 12 39 39 H 1.09009 * 109.47026 * 60.00095 * 15 13 12 40 40 H 1.08998 * 109.47390 * 180.02562 * 15 13 12 41 41 H 0.97005 * 119.99970 * 334.99865 * 16 13 12 42 42 H 0.97002 * 119.99824 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.94121 * 180.02562 * 27 12 11 44 44 H 1.07994 * 120.06654 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2934 2.3742 0.0005 5 6 1.9219 3.6048 0.0011 6 6 3.3036 3.6832 0.0005 7 6 4.0650 2.5322 0.0000 8 6 3.4417 1.2864 -0.0005 9 6 4.2554 0.0462 -0.0017 10 6 3.9953 -0.9618 0.9249 11 6 4.7515 -2.1162 0.9152 12 6 5.7740 -2.2686 -0.0040 13 6 6.6006 -3.5287 -0.0052 14 1 7.0933 -3.6390 -0.9711 15 6 7.6561 -3.4473 1.0994 16 7 5.7313 -4.6833 0.2343 17 6 6.0969 -5.9045 -0.2033 18 8 7.1490 -6.0479 -0.7978 19 6 5.2281 -7.0580 0.0355 20 1 4.3435 -6.9506 0.6457 21 6 5.5439 -8.3009 -0.5272 22 7 6.6735 -8.4617 -1.1642 23 14 4.3503 -9.7289 -0.3673 24 1 3.4935 -9.7960 -1.5784 25 1 5.1111 -10.9967 -0.2285 26 1 3.4976 -9.5295 0.8319 27 6 6.0403 -1.2690 -0.9222 28 6 5.2866 -0.1128 -0.9256 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2148 2.3194 0.0005 33 1 1.3322 4.5095 0.0061 34 1 3.7878 4.6486 0.0005 35 1 5.1431 2.5971 -0.0008 36 1 3.2005 -0.8417 1.6463 37 1 4.5477 -2.9002 1.6296 38 1 8.3029 -2.5882 0.9213 39 1 7.1633 -3.3369 2.0655 40 1 8.2543 -4.3585 1.0983 41 1 4.8924 -4.5689 0.7079 42 1 6.8924 -9.3227 -1.5536 43 1 6.8395 -1.3935 -1.6378 44 1 5.4951 0.6668 -1.6432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356840084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:02 Heat of formation + Delta-G solvation = -52.551506 kcal Electronic energy + Delta-G solvation = -26211.864916 eV Core-core repulsion = 22479.063208 eV Total energy + Delta-G solvation = -3732.801708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35485 -40.41031 -39.13317 -38.20733 -36.15478 -34.57598 -33.30056 -31.98956 -31.42292 -31.01209 -29.31841 -28.18729 -28.03816 -25.13280 -23.88075 -23.18371 -22.71200 -21.89688 -20.86052 -19.45057 -19.06059 -17.73730 -17.47246 -16.99068 -16.84831 -16.68115 -16.22867 -15.75085 -15.57425 -15.39699 -15.19803 -15.04910 -14.57332 -14.54060 -14.25140 -14.19968 -13.88996 -13.61222 -13.35908 -13.24656 -12.98809 -12.84958 -12.76085 -12.60905 -12.56686 -12.42144 -12.03841 -11.99426 -11.94357 -11.85111 -11.54817 -10.93383 -10.21398 -9.86886 -9.82210 -9.52036 -9.43511 -8.87416 -8.29289 -6.84614 -0.04227 0.48181 0.51734 0.72433 1.39416 1.40923 1.56669 2.24713 2.40980 2.47983 2.70109 2.92479 3.17185 3.57986 3.63686 3.80167 3.93600 4.00430 4.09785 4.12471 4.29719 4.36850 4.39750 4.44172 4.47235 4.50276 4.56590 4.66863 4.70744 4.75404 4.80483 4.90854 4.97885 5.04924 5.15268 5.25699 5.32402 5.33439 5.42069 5.51731 5.59600 5.67210 5.68670 5.88347 5.89435 6.05529 6.23309 6.31463 6.49321 6.87229 7.54978 8.50171 8.68036 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002678 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.173831 B =10451.847987 C =11678.882998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.075 4.075 8 C -0.101 4.101 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.116 4.116 12 C -0.087 4.087 13 C 0.188 3.812 14 H 0.051 0.949 15 C -0.142 4.142 16 N -0.748 5.748 17 C 0.542 3.458 18 O -0.630 6.630 19 C -0.575 4.575 20 H 0.085 0.915 21 C 0.029 3.971 22 N -0.821 5.821 23 Si 0.998 3.002 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.248 1.248 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.391 0.609 42 H 0.274 0.726 43 H 0.129 0.871 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.476 25.400 4.209 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.177 4.177 7 C -0.093 4.093 8 C -0.102 4.102 9 C -0.046 4.046 10 C -0.110 4.110 11 C -0.134 4.134 12 C -0.088 4.088 13 C 0.083 3.917 14 H 0.069 0.931 15 C -0.200 4.200 16 N -0.403 5.403 17 C 0.346 3.654 18 O -0.517 6.517 19 C -0.612 4.612 20 H 0.103 0.897 21 C -0.186 4.186 22 N -0.451 5.451 23 Si 0.817 3.183 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.171 1.171 27 C -0.138 4.138 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.226 0.774 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.513 25.002 3.691 28.201 hybrid contribution -0.626 -0.900 0.059 1.098 sum -13.139 24.102 3.750 27.706 Atomic orbital electron populations 1.23310 0.76807 1.05138 1.02332 1.86144 1.23071 1.27030 1.88312 1.19282 0.91578 0.85167 0.96370 1.21463 1.01059 0.91901 1.08803 1.21382 0.94996 0.97584 0.95759 1.21333 0.94141 0.98890 1.03319 1.21305 1.00810 0.90366 0.96849 1.18298 0.89876 0.93380 1.08649 1.18740 0.95749 0.93858 0.96227 1.21159 0.98677 0.92593 0.98525 1.20927 0.95550 0.97978 0.98957 1.20009 0.96901 0.95040 0.96801 1.19438 0.90568 0.83416 0.98291 0.93054 1.22034 0.98400 1.01017 0.98580 1.45989 1.24246 1.06805 1.63251 1.18565 0.85824 0.82965 0.78070 1.90542 1.27696 1.85747 1.47714 1.21417 1.10962 0.93851 1.34927 0.89684 1.26967 0.96751 1.02706 0.92197 1.70192 1.22665 1.25075 1.27155 0.85014 0.77742 0.75597 0.79965 1.18852 1.19621 1.17146 1.21069 1.00582 0.93668 0.98453 1.21298 0.94829 0.97570 0.98545 0.91660 0.87431 0.91206 0.83447 0.82986 0.83259 0.84200 0.85424 0.85724 0.90458 0.91729 0.95103 0.77405 0.91577 0.85307 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.52 8.86 -91.77 -0.81 -8.33 16 3 C 0.12 2.61 6.60 22.73 0.15 2.76 16 4 C -0.21 -3.36 9.03 22.34 0.20 -3.16 16 5 C -0.08 -1.02 10.03 22.29 0.22 -0.80 16 6 C -0.16 -2.17 10.03 22.25 0.22 -1.95 16 7 C -0.08 -1.34 9.51 22.47 0.21 -1.13 16 8 C -0.10 -2.30 5.48 -19.96 -0.11 -2.41 16 9 C -0.05 -1.20 5.27 -20.05 -0.11 -1.31 16 10 C -0.09 -2.55 8.79 22.49 0.20 -2.35 16 11 C -0.12 -3.56 9.04 22.24 0.20 -3.36 16 12 C -0.09 -2.94 4.96 -19.82 -0.10 -3.04 16 13 C 0.19 7.81 2.77 44.25 0.12 7.93 16 14 H 0.05 2.44 7.43 -2.39 -0.02 2.42 16 15 C -0.14 -5.34 9.46 71.98 0.68 -4.66 16 16 N -0.75 -35.53 5.02 -450.40 -2.26 -37.79 16 17 C 0.54 32.44 7.71 86.36 0.67 33.11 16 18 O -0.63 -43.17 14.71 -4.31 -0.06 -43.24 16 19 C -0.57 -33.56 9.53 24.83 0.24 -33.33 16 20 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 21 C 0.03 1.64 5.49 85.30 0.47 2.11 16 22 N -0.82 -51.35 11.85 21.83 0.26 -51.10 16 23 Si 1.00 41.91 29.56 68.60 2.03 43.94 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 27 C -0.12 -3.57 9.65 22.24 0.21 -3.36 16 28 C -0.10 -2.71 9.51 22.49 0.21 -2.50 16 29 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 32 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 33 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.14 2.10 8.04 -2.91 -0.02 2.07 16 36 H 0.13 3.26 7.71 -2.91 -0.02 3.24 16 37 H 0.12 3.68 6.90 -2.91 -0.02 3.66 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.39 16.46 6.84 -92.70 -0.63 15.83 16 42 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 43 H 0.13 3.61 8.03 -2.91 -0.02 3.58 16 44 H 0.14 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -80.73 373.46 4.35 -76.38 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.39 Total: 36.19 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.81 Total: -16.06 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -2.00 Total: -88.89 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.88 Total: -51.57 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -80.73 4.35 -76.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356840084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.828 kcal (2) G-P(sol) polarization free energy of solvation -80.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds