Wall clock time and date at job start Tue Mar 31 2020 14:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47282 * 2 1 4 4 H 1.08996 * 109.46923 * 53.94334 * 3 2 1 5 5 C 1.50699 * 109.47146 * 173.94621 * 3 2 1 6 6 H 1.07999 * 119.99881 * 119.99932 * 5 3 2 7 7 C 1.37875 * 120.00170 * 300.00121 * 5 3 2 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99957 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47369 * 89.99789 * 9 7 5 11 11 H 1.48497 * 109.47169 * 209.99534 * 9 7 5 12 12 H 1.48500 * 109.47251 * 329.99824 * 9 7 5 13 13 N 1.46497 * 109.46796 * 293.94773 * 3 2 1 14 14 S 1.65598 * 119.99962 * 114.88463 * 13 3 2 15 15 O 1.42096 * 106.40518 * 307.50800 * 14 13 3 16 16 O 1.42105 * 106.40075 * 174.58772 * 14 13 3 17 17 C 1.76205 * 107.21933 * 61.04907 * 14 13 3 18 18 C 1.38256 * 119.99593 * 10.33089 * 17 14 13 19 19 C 1.38213 * 120.00030 * 179.97438 * 18 17 14 20 20 C 1.38261 * 119.99902 * 359.97438 * 19 18 17 21 21 C 1.38217 * 119.99713 * 0.04272 * 20 19 18 22 22 C 1.38215 * 120.00282 * 190.30456 * 17 14 13 23 23 C 1.50697 * 119.99834 * 0.02562 * 22 17 14 24 24 C 1.53000 * 109.47220 * 200.22389 * 23 22 17 25 25 C 1.52999 * 109.47247 * 320.22489 * 23 22 17 26 26 C 1.53003 * 109.47324 * 80.22472 * 23 22 17 27 27 H 1.08993 * 109.46932 * 186.58364 * 1 2 3 28 28 H 1.08999 * 109.46884 * 306.58487 * 1 2 3 29 29 H 1.09001 * 109.46917 * 66.58321 * 1 2 3 30 30 H 1.09001 * 109.47411 * 239.99838 * 2 1 3 31 31 H 1.09004 * 109.47462 * 119.99723 * 2 1 3 32 32 H 0.97003 * 119.99934 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00168 * 294.88740 * 13 3 2 34 34 H 1.08001 * 120.00484 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00193 * 179.69962 * 19 18 17 36 36 H 1.08001 * 120.00070 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.99641 * 179.97438 * 21 20 19 38 38 H 1.08996 * 109.46970 * 59.99687 * 24 23 22 39 39 H 1.08999 * 109.47151 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.46956 * 300.00365 * 24 23 22 41 41 H 1.09000 * 109.47611 * 82.71006 * 25 23 22 42 42 H 1.09004 * 109.47342 * 202.71024 * 25 23 22 43 43 H 1.09002 * 109.46789 * 322.70991 * 25 23 22 44 44 H 1.09001 * 109.47091 * 69.79570 * 26 23 22 45 45 H 1.08999 * 109.47212 * 189.80122 * 26 23 22 46 46 H 1.09005 * 109.46970 * 309.79522 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5909 1.9867 0.8308 5 6 3.5396 1.4451 0.1498 6 1 4.1582 1.8850 -0.6184 7 6 4.1217 0.8860 1.2676 8 7 3.3683 0.3509 2.2034 9 14 5.9803 0.8899 1.4536 10 1 6.4049 2.1271 2.1566 11 1 6.4015 -0.2963 2.2415 12 1 6.6123 0.8420 0.1107 13 7 1.6742 2.0897 -1.2623 14 16 0.6132 3.3611 -1.2639 15 8 -0.5372 2.9246 -0.5530 16 8 0.5650 3.8419 -2.6003 17 6 1.3367 4.6456 -0.2988 18 6 2.6554 4.5476 0.1050 19 6 3.2232 5.5553 0.8615 20 6 2.4726 6.6617 1.2140 21 6 1.1542 6.7594 0.8106 22 6 0.5862 5.7513 0.0540 23 6 -0.8510 5.8581 -0.3861 24 6 -1.2959 7.3207 -0.3251 25 6 -0.9846 5.3439 -1.8210 26 6 -1.7321 5.0180 0.5407 27 1 -0.3633 -1.0208 0.1178 28 1 -0.3633 0.6125 0.8252 29 1 -0.3633 0.4084 -0.9430 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7779 -0.0428 2.9897 33 1 2.0535 1.7736 -2.0972 34 1 3.2418 3.6836 -0.1707 35 1 4.2518 5.4765 1.1810 36 1 2.9164 7.4494 1.8049 37 1 0.5679 7.6234 1.0863 38 1 -0.6682 7.9192 -0.9853 39 1 -2.3356 7.3979 -0.6430 40 1 -1.2007 7.6870 0.6972 41 1 -1.0664 4.2570 -1.8114 42 1 -1.8768 5.7714 -2.2786 43 1 -0.1057 5.6371 -2.3952 44 1 -1.7747 5.4860 1.5242 45 1 -2.7378 4.9528 0.1254 46 1 -1.3114 4.0166 0.6327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358208371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:12 Heat of formation + Delta-G solvation = -45.645869 kcal Electronic energy + Delta-G solvation = -28142.020243 eV Core-core repulsion = 24544.961938 eV Total energy + Delta-G solvation = -3597.058306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.96184 -38.43480 -38.08577 -37.57159 -36.38897 -34.15978 -32.49520 -32.10828 -30.96504 -28.70880 -28.28021 -28.10821 -24.86374 -24.27474 -23.67381 -21.94467 -20.89234 -19.98610 -19.32865 -18.61700 -18.05779 -17.12616 -16.66526 -16.41271 -16.15862 -15.75221 -15.53923 -15.38058 -15.13365 -14.80027 -14.70396 -14.58090 -14.03526 -13.57648 -13.47654 -13.42803 -13.33439 -13.13364 -13.01022 -12.93464 -12.66982 -12.64867 -12.58272 -12.51896 -12.19778 -12.07304 -11.92741 -11.83974 -11.55488 -11.47304 -11.33716 -11.18655 -11.06873 -10.48522 -10.21995 -10.01385 -9.72660 -8.10478 -6.25744 -0.35656 -0.04646 0.40999 1.44794 1.48817 1.56466 2.14709 2.46180 2.60193 2.73563 3.16523 3.46873 3.65709 3.85534 3.89927 4.06021 4.15739 4.24767 4.39103 4.45106 4.53804 4.59376 4.62979 4.67485 4.71125 4.81314 4.85826 4.92081 4.96412 4.98214 5.01281 5.12882 5.17118 5.19620 5.26303 5.36305 5.38254 5.43792 5.49274 5.50635 5.66689 5.74284 5.81188 6.00211 6.07170 6.13472 6.43018 6.83887 7.43897 8.92978 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.005959 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.387739 B = 4697.835146 C = 5782.158409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.021 0.979 5 C -0.540 4.540 6 H 0.070 0.930 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.267 1.267 13 N -1.109 6.109 14 S 2.710 3.290 15 O -0.970 6.970 16 O -0.999 6.999 17 C -0.684 4.684 18 C -0.045 4.045 19 C -0.159 4.159 20 C -0.064 4.064 21 C -0.149 4.149 22 C 0.011 3.989 23 C -0.057 4.057 24 C -0.135 4.135 25 C -0.201 4.201 26 C -0.171 4.171 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 12.420 -2.354 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.182 3.818 4 H 0.039 0.961 5 C -0.579 4.579 6 H 0.088 0.912 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.869 5.869 14 S 2.804 3.196 15 O -0.960 6.960 16 O -0.990 6.990 17 C -0.772 4.772 18 C -0.064 4.064 19 C -0.178 4.178 20 C -0.081 4.081 21 C -0.167 4.167 22 C 0.009 3.991 23 C -0.058 4.058 24 C -0.191 4.191 25 C -0.258 4.258 26 C -0.229 4.229 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.182 0.818 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.367 12.390 -2.429 13.719 hybrid contribution 1.764 -0.439 0.321 1.846 sum -3.603 11.951 -2.108 12.659 Atomic orbital electron populations 1.21734 0.96930 1.00239 1.00700 1.21844 0.93922 0.99141 1.01939 1.18338 0.94382 0.90276 0.78806 0.96102 1.21645 0.91933 1.38768 1.05577 0.91155 1.25573 1.01871 0.94520 0.95419 1.69991 1.36527 1.38481 1.09629 0.85695 0.80871 0.77628 0.78360 1.19952 1.21374 1.19114 1.55311 1.66125 1.48855 1.16596 1.01465 0.72560 0.72421 0.73134 1.93466 1.46839 1.81483 1.74230 1.93629 1.87439 1.80511 1.37406 1.30596 1.06219 1.18005 1.22384 1.21697 0.92869 0.98958 0.92878 1.21561 1.01643 0.94790 0.99774 1.21841 0.93756 0.97110 0.95423 1.21564 0.96105 0.99713 0.99312 1.19769 0.94516 0.91721 0.93058 1.20021 0.90489 0.99969 0.95283 1.21958 1.02336 0.91500 1.03356 1.23374 1.05882 1.00363 0.96208 1.22487 0.99788 1.02051 0.98544 0.92947 0.94282 0.93796 0.93661 0.90227 0.92584 0.74992 0.83427 0.84105 0.81805 0.81814 0.91545 0.90448 0.90335 0.94308 0.88469 0.89861 0.91743 0.91179 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.92 71.98 0.64 -5.12 16 2 C -0.13 -5.88 5.45 30.60 0.17 -5.72 16 3 C 0.29 13.34 1.40 44.25 0.06 13.40 16 4 H 0.02 1.09 7.77 -2.39 -0.02 1.08 16 5 C -0.54 -26.15 6.89 25.60 0.18 -25.97 16 6 H 0.07 3.27 7.43 -2.91 -0.02 3.25 16 7 C 0.03 1.36 5.29 84.65 0.45 1.81 16 8 N -0.91 -48.05 11.29 21.45 0.24 -47.81 16 9 Si 0.95 39.63 29.54 68.60 2.03 41.65 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 13 N -1.11 -44.91 4.33 -172.53 -0.75 -45.66 16 14 S 2.71 107.38 3.47 -56.49 -0.20 107.19 16 15 O -0.97 -40.64 10.96 -128.00 -1.40 -42.05 16 16 O -1.00 -40.76 13.82 -128.00 -1.77 -42.53 16 17 C -0.68 -25.91 5.55 22.27 0.12 -25.79 16 18 C -0.05 -1.72 9.03 22.27 0.20 -1.52 16 19 C -0.16 -5.00 10.05 22.27 0.22 -4.78 16 20 C -0.06 -1.62 10.05 22.27 0.22 -1.39 16 21 C -0.15 -3.88 9.12 22.27 0.20 -3.68 16 22 C 0.01 0.36 4.60 -19.87 -0.09 0.26 16 23 C -0.06 -1.65 0.73 -52.93 -0.04 -1.69 16 24 C -0.13 -2.68 7.33 71.98 0.53 -2.15 16 25 C -0.20 -6.43 6.44 71.98 0.46 -5.96 16 26 C -0.17 -5.17 8.04 71.98 0.58 -4.59 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.70 8.08 -2.39 -0.02 1.69 16 29 H 0.04 1.74 7.43 -2.39 -0.02 1.72 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 4.05 5.93 -2.38 -0.01 4.03 16 32 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.42 15.18 8.96 -96.74 -0.87 14.31 16 34 H 0.15 6.01 4.31 -2.91 -0.01 6.00 16 35 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.16 3.02 5.98 -2.91 -0.02 3.00 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 40 H 0.08 1.27 6.68 -2.39 -0.02 1.26 16 41 H 0.04 1.42 3.37 -20.27 -0.07 1.35 16 42 H 0.10 2.52 7.93 -2.38 -0.02 2.50 16 43 H 0.08 2.85 6.16 -2.39 -0.01 2.84 16 44 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 45 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 46 H 0.08 3.17 4.56 -4.28 -0.02 3.15 16 Total: -1.00 -60.88 351.42 2.12 -58.76 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: 0.06 Total: 43.33 kcal Atomic # 6 Polarization: -76.80 SS G_CDS: 3.91 Total: -72.89 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -0.51 Total: -93.47 kcal Atomic # 8 Polarization: -81.41 SS G_CDS: -3.17 Total: -84.58 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 107.38 SS G_CDS: -0.20 Total: 107.19 kcal Total: -60.88 2.12 -58.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358208371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.113 kcal (2) G-P(sol) polarization free energy of solvation -60.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds