Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47213 * 2 1 4 4 N 1.46499 * 109.47162 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99560 * 270.88399 * 4 3 2 6 6 H 1.08001 * 120.00504 * 326.01725 * 5 4 3 7 7 C 1.38818 * 119.99678 * 146.01618 * 5 4 3 8 8 N 1.31617 * 119.99631 * 336.66488 * 7 5 4 9 9 Si 1.86796 * 120.00178 * 156.66387 * 7 5 4 10 10 H 1.48507 * 109.46851 * 59.99745 * 9 7 5 11 11 H 1.48497 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46977 * 300.00334 * 9 7 5 13 13 C 1.46496 * 120.00186 * 90.88920 * 4 3 2 14 14 C 1.52998 * 109.47385 * 90.00167 * 13 4 3 15 15 H 1.08993 * 109.47217 * 59.99995 * 14 13 4 16 16 O 1.42903 * 109.46996 * 299.99754 * 14 13 4 17 17 C 1.53003 * 109.47083 * 179.97438 * 14 13 4 18 18 O 1.42898 * 109.46844 * 184.99869 * 17 14 13 19 19 C 1.36004 * 116.99832 * 180.02562 * 18 17 14 20 20 C 1.38709 * 119.97515 * 179.97438 * 19 18 17 21 21 C 1.38096 * 120.02393 * 179.69986 * 20 19 18 22 22 C 1.38921 * 119.97592 * 0.27213 * 21 20 19 23 23 S 1.76196 * 120.02485 * 180.02562 * 22 21 20 24 24 C 1.81404 * 103.00084 * 180.02562 * 23 22 21 25 25 C 1.38918 * 119.94873 * 0.02562 * 22 21 20 26 26 C 1.38092 * 119.97904 * 359.97438 * 25 22 21 27 27 H 1.08992 * 109.47579 * 299.99869 * 1 2 3 28 28 H 1.08998 * 109.47198 * 60.00527 * 1 2 3 29 29 H 1.09007 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47077 * 239.99764 * 2 1 3 31 31 H 1.08997 * 109.46882 * 120.00179 * 2 1 3 32 32 H 1.09000 * 109.47291 * 59.99895 * 3 2 1 33 33 H 1.08997 * 109.47343 * 299.99897 * 3 2 1 34 34 H 0.97005 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47131 * 329.99559 * 13 4 3 36 36 H 1.09003 * 109.46763 * 210.00257 * 13 4 3 37 37 H 0.96700 * 113.99999 * 300.00792 * 16 14 13 38 38 H 1.09002 * 109.47009 * 64.99442 * 17 14 13 39 39 H 1.08996 * 109.46901 * 304.99757 * 17 14 13 40 40 H 1.07995 * 119.98803 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.01053 * 180.29870 * 21 20 19 42 42 H 1.09003 * 109.47051 * 300.00386 * 24 23 22 43 43 H 1.09008 * 109.46966 * 59.99361 * 24 23 22 44 44 H 1.08998 * 109.47251 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.01203 * 180.02562 * 25 22 21 46 46 H 1.08003 * 119.99075 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4239 1.1850 6 1 3.7888 1.9333 2.0486 7 6 5.4005 0.7504 1.2767 8 7 5.6779 -0.2220 0.4342 9 14 6.6354 1.2242 2.5956 10 1 6.0219 1.0436 3.9359 11 1 7.8376 0.3599 2.4816 12 1 7.0281 2.6453 2.4185 13 6 4.2370 1.4623 -1.2694 14 6 4.4919 2.9115 -1.6886 15 1 5.0813 3.4133 -0.9213 16 8 3.2432 3.5877 -1.8485 17 6 5.2570 2.9321 -3.0134 18 8 5.5967 4.2796 -3.3463 19 6 6.2838 4.4753 -4.5035 20 6 6.6448 5.7586 -4.8866 21 6 7.3480 5.9579 -6.0584 22 6 7.6888 4.8730 -6.8563 23 16 8.5866 5.1257 -8.3513 24 6 8.7743 3.4435 -9.0038 25 6 7.3214 3.5888 -6.4747 26 6 6.6183 3.3919 -5.3026 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.5235 -0.6930 0.4985 35 1 3.6476 0.9603 -2.0368 36 1 5.1894 0.9464 -1.1475 37 1 2.6658 3.1946 -2.5171 38 1 4.6321 2.5099 -3.8005 39 1 6.1677 2.3412 -2.9163 40 1 6.3798 6.6019 -4.2662 41 1 7.6331 6.9567 -6.3540 42 1 9.3212 2.8338 -8.2846 43 1 7.7897 3.0082 -9.1748 44 1 9.3243 3.4779 -9.9442 45 1 7.5862 2.7446 -7.0941 46 1 6.3329 2.3935 -5.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411278271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = -52.511357 kcal Electronic energy + Delta-G solvation = -25210.906829 eV Core-core repulsion = 21613.550814 eV Total energy + Delta-G solvation = -3597.356016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.07569 -37.92736 -36.77670 -35.15168 -32.90788 -31.57732 -30.91955 -30.36519 -29.57210 -28.86138 -25.84549 -25.52793 -23.10351 -22.60690 -21.78533 -20.93888 -19.95896 -18.34031 -17.55515 -16.90075 -16.18944 -16.01702 -15.27178 -15.06329 -14.91678 -14.66302 -14.30108 -14.25731 -14.05829 -13.85753 -13.68757 -13.53180 -13.09459 -12.90882 -12.71594 -12.64501 -12.39105 -12.12829 -11.72535 -11.36709 -11.13601 -11.02447 -10.97962 -10.78087 -10.61117 -10.50755 -10.39520 -10.24033 -10.08748 -10.01738 -9.69652 -9.36973 -9.23651 -9.07823 -8.56138 -7.34702 -6.65449 -5.85924 -3.38260 1.17942 1.19350 1.34045 2.20530 3.28900 3.36507 3.40359 3.44254 3.57931 4.44423 4.61599 4.72991 4.74363 4.74938 4.96422 5.08461 5.12190 5.22811 5.27919 5.34033 5.36675 5.45695 5.57144 5.73679 5.75941 5.80787 5.83272 5.95925 6.11960 6.13698 6.16318 6.23403 6.26160 6.32420 6.51541 6.58460 6.67298 6.70229 6.93264 7.05883 7.24340 7.41111 7.50552 7.77246 8.25730 8.42717 9.10963 9.75086 10.31373 11.13808 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.002652 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.515055 B =10553.929412 C =11427.834483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.573 5.573 5 C -0.253 4.253 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.121 3.879 14 C 0.088 3.912 15 H 0.104 0.896 16 O -0.551 6.551 17 C 0.028 3.972 18 O -0.301 6.301 19 C 0.138 3.862 20 C -0.139 4.139 21 C -0.059 4.059 22 C -0.132 4.132 23 S -0.130 6.130 24 C -0.142 4.142 25 C -0.090 4.090 26 C -0.194 4.194 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.255 0.745 35 H 0.028 0.972 36 H 0.109 0.891 37 H 0.357 0.643 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 5.853 -16.585 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.027 3.973 4 N -0.291 5.291 5 C -0.383 4.383 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C -0.007 4.007 14 C 0.027 3.973 15 H 0.122 0.878 16 O -0.354 6.354 17 C -0.048 4.048 18 O -0.214 6.214 19 C 0.090 3.910 20 C -0.159 4.159 21 C -0.082 4.082 22 C -0.244 4.244 23 S 0.109 5.891 24 C -0.311 4.311 25 C -0.113 4.113 26 C -0.214 4.214 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.126 0.874 37 H 0.202 0.798 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.142 0.858 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.650 7.217 -16.529 18.229 hybrid contribution 0.165 -1.767 0.661 1.894 sum 2.815 5.450 -15.868 17.012 Atomic orbital electron populations 1.21752 0.97768 1.00247 1.00735 1.22113 0.93058 1.01077 1.01922 1.20934 0.84776 0.92928 0.98670 1.43601 0.99573 1.84255 1.01716 1.19086 1.02845 1.26270 0.90096 0.91939 1.25062 1.00720 0.95250 0.98269 1.69958 1.23807 1.20143 1.39401 0.86477 0.80963 0.78256 0.81862 1.20686 1.21623 1.20822 1.21468 1.01211 0.90730 0.87283 1.23077 0.83559 0.98499 0.92213 0.87792 1.86637 1.29078 1.57481 1.62179 1.23888 1.00308 0.81013 0.99548 1.86264 1.68756 1.30458 1.35898 1.19204 0.91653 0.93862 0.86284 1.20403 1.02363 0.95290 0.97859 1.20524 0.96957 0.97718 0.92997 1.21439 1.06613 0.96379 0.99939 1.85310 1.69499 1.12495 1.21747 1.23638 1.05774 0.96950 1.04703 1.20925 0.98279 0.95316 0.96774 1.21240 1.04481 0.98958 0.96713 0.93380 0.93672 0.93958 0.93275 0.91978 0.94104 0.94349 0.93505 0.95347 0.87404 0.79767 0.92341 0.91157 0.84568 0.85019 0.89787 0.89828 0.87568 0.85811 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.71 6.26 -26.73 -0.17 -2.88 16 3 C 0.15 3.13 5.40 -4.05 -0.02 3.11 16 4 N -0.57 -13.52 2.37 -173.25 -0.41 -13.93 16 5 C -0.25 -6.69 9.49 -15.05 -0.14 -6.83 16 6 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 7 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 8 N -0.89 -24.25 11.34 55.49 0.63 -23.62 16 9 Si 0.90 21.12 29.61 -169.99 -5.03 16.08 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.12 2.58 4.99 -4.05 -0.02 2.56 16 14 C 0.09 1.68 3.52 -26.73 -0.09 1.59 16 15 H 0.10 2.29 8.14 -51.93 -0.42 1.87 16 16 O -0.55 -10.17 12.04 -40.06 -0.48 -10.66 16 17 C 0.03 0.45 4.37 37.16 0.16 0.62 16 18 O -0.30 -5.01 10.10 -24.58 -0.25 -5.26 16 19 C 0.14 2.02 6.69 -39.23 -0.26 1.76 16 20 C -0.14 -1.82 9.98 -39.46 -0.39 -2.21 16 21 C -0.06 -0.69 9.79 -39.38 -0.39 -1.08 16 22 C -0.13 -1.55 6.11 -39.08 -0.24 -1.79 16 23 S -0.13 -1.29 22.56 -107.50 -2.43 -3.71 16 24 C -0.14 -0.97 9.15 101.05 0.92 -0.04 16 25 C -0.09 -1.05 9.36 -39.38 -0.37 -1.41 16 26 C -0.19 -2.53 9.03 -39.46 -0.36 -2.89 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.85 8.05 -51.93 -0.42 0.44 16 33 H 0.04 0.71 6.89 -51.93 -0.36 0.35 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.11 2.61 5.33 -51.93 -0.28 2.34 16 37 H 0.36 5.27 8.79 45.56 0.40 5.67 16 38 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 39 H 0.07 1.10 7.67 -51.93 -0.40 0.70 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.08 0.55 7.74 -51.92 -0.40 0.15 16 43 H 0.08 0.53 7.75 -51.92 -0.40 0.12 16 44 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.12 1.17 5.87 -52.48 -0.31 0.86 16 46 H 0.13 1.61 6.29 -52.48 -0.33 1.28 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -29.30 387.77 -9.88 -39.18 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.67 Total: 7.35 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.08 Total: -11.28 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.22 Total: -37.55 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.73 Total: -15.92 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.43 Total: -3.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.30 -9.88 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411278271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.331 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds