Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47213 * 2 1 4 4 N 1.46499 * 109.47162 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99560 * 270.88399 * 4 3 2 6 6 H 1.08001 * 120.00504 * 326.01725 * 5 4 3 7 7 C 1.38818 * 119.99678 * 146.01618 * 5 4 3 8 8 N 1.31617 * 119.99631 * 336.66488 * 7 5 4 9 9 Si 1.86796 * 120.00178 * 156.66387 * 7 5 4 10 10 H 1.48507 * 109.46851 * 59.99745 * 9 7 5 11 11 H 1.48497 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46977 * 300.00334 * 9 7 5 13 13 C 1.46496 * 120.00186 * 90.88920 * 4 3 2 14 14 C 1.52998 * 109.47385 * 90.00167 * 13 4 3 15 15 H 1.08993 * 109.47217 * 59.99995 * 14 13 4 16 16 O 1.42903 * 109.46996 * 299.99754 * 14 13 4 17 17 C 1.53003 * 109.47083 * 179.97438 * 14 13 4 18 18 O 1.42898 * 109.46844 * 184.99869 * 17 14 13 19 19 C 1.36004 * 116.99832 * 180.02562 * 18 17 14 20 20 C 1.38709 * 119.97515 * 179.97438 * 19 18 17 21 21 C 1.38096 * 120.02393 * 179.69986 * 20 19 18 22 22 C 1.38921 * 119.97592 * 0.27213 * 21 20 19 23 23 S 1.76196 * 120.02485 * 180.02562 * 22 21 20 24 24 C 1.81404 * 103.00084 * 180.02562 * 23 22 21 25 25 C 1.38918 * 119.94873 * 0.02562 * 22 21 20 26 26 C 1.38092 * 119.97904 * 359.97438 * 25 22 21 27 27 H 1.08992 * 109.47579 * 299.99869 * 1 2 3 28 28 H 1.08998 * 109.47198 * 60.00527 * 1 2 3 29 29 H 1.09007 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47077 * 239.99764 * 2 1 3 31 31 H 1.08997 * 109.46882 * 120.00179 * 2 1 3 32 32 H 1.09000 * 109.47291 * 59.99895 * 3 2 1 33 33 H 1.08997 * 109.47343 * 299.99897 * 3 2 1 34 34 H 0.97005 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47131 * 329.99559 * 13 4 3 36 36 H 1.09003 * 109.46763 * 210.00257 * 13 4 3 37 37 H 0.96700 * 113.99999 * 300.00792 * 16 14 13 38 38 H 1.09002 * 109.47009 * 64.99442 * 17 14 13 39 39 H 1.08996 * 109.46901 * 304.99757 * 17 14 13 40 40 H 1.07995 * 119.98803 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.01053 * 180.29870 * 21 20 19 42 42 H 1.09003 * 109.47051 * 300.00386 * 24 23 22 43 43 H 1.09008 * 109.46966 * 59.99361 * 24 23 22 44 44 H 1.08998 * 109.47251 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.01203 * 180.02562 * 25 22 21 46 46 H 1.08003 * 119.99075 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4239 1.1850 6 1 3.7888 1.9333 2.0486 7 6 5.4005 0.7504 1.2767 8 7 5.6779 -0.2220 0.4342 9 14 6.6354 1.2242 2.5956 10 1 6.0219 1.0436 3.9359 11 1 7.8376 0.3599 2.4816 12 1 7.0281 2.6453 2.4185 13 6 4.2370 1.4623 -1.2694 14 6 4.4919 2.9115 -1.6886 15 1 5.0813 3.4133 -0.9213 16 8 3.2432 3.5877 -1.8485 17 6 5.2570 2.9321 -3.0134 18 8 5.5967 4.2796 -3.3463 19 6 6.2838 4.4753 -4.5035 20 6 6.6448 5.7586 -4.8866 21 6 7.3480 5.9579 -6.0584 22 6 7.6888 4.8730 -6.8563 23 16 8.5866 5.1257 -8.3513 24 6 8.7743 3.4435 -9.0038 25 6 7.3214 3.5888 -6.4747 26 6 6.6183 3.3919 -5.3026 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.5235 -0.6930 0.4985 35 1 3.6476 0.9603 -2.0368 36 1 5.1894 0.9464 -1.1475 37 1 2.6658 3.1946 -2.5171 38 1 4.6321 2.5099 -3.8005 39 1 6.1677 2.3412 -2.9163 40 1 6.3798 6.6019 -4.2662 41 1 7.6331 6.9567 -6.3540 42 1 9.3212 2.8338 -8.2846 43 1 7.7897 3.0082 -9.1748 44 1 9.3243 3.4779 -9.9442 45 1 7.5862 2.7446 -7.0941 46 1 6.3329 2.3935 -5.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411278271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = -68.646771 kcal Electronic energy + Delta-G solvation = -25211.606513 eV Core-core repulsion = 21613.550814 eV Total energy + Delta-G solvation = -3598.055700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16424 -39.27517 -38.12558 -36.74149 -34.61110 -32.75772 -32.42084 -31.56947 -30.71275 -29.61193 -27.36988 -27.23816 -24.38417 -23.71160 -23.11692 -22.37189 -21.61552 -19.44149 -18.88859 -18.24714 -17.48882 -17.42118 -16.80323 -16.40488 -15.94408 -15.90124 -15.82934 -15.63732 -15.16424 -15.10882 -14.71126 -14.62912 -14.54726 -14.08010 -13.88776 -13.59274 -13.57128 -13.42625 -13.05271 -12.92193 -12.71005 -12.55457 -12.30294 -12.22564 -12.11332 -12.08384 -11.90699 -11.75807 -11.64230 -11.33227 -11.22366 -10.92667 -10.54554 -10.18052 -10.03865 -8.57384 -8.19945 -7.84365 -5.40350 0.21115 0.24158 0.60428 1.43536 1.47143 1.49173 1.53195 2.12687 2.50746 2.60986 3.20721 3.53507 3.63315 3.73631 3.83500 3.99398 4.08605 4.19649 4.26251 4.27362 4.29769 4.33297 4.42321 4.45271 4.51886 4.54285 4.65284 4.74357 4.84150 4.87833 4.91154 5.00754 5.02072 5.20336 5.20692 5.25907 5.28389 5.33538 5.48517 5.57088 5.62155 5.62769 5.77728 6.38506 6.44235 6.94349 7.15916 7.86443 8.36009 9.10331 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.002652 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.515055 B =10553.929412 C =11427.834483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.151 3.849 4 N -0.590 5.590 5 C -0.264 4.264 6 H 0.050 0.950 7 C -0.033 4.033 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.126 3.874 14 C 0.105 3.895 15 H 0.066 0.934 16 O -0.561 6.561 17 C 0.041 3.959 18 O -0.323 6.323 19 C 0.110 3.890 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.135 4.135 23 S -0.143 6.143 24 C -0.138 4.138 25 C -0.092 4.092 26 C -0.198 4.198 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.027 0.973 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.253 0.747 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.376 0.624 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.148 0.852 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 5.924 -18.749 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.026 3.974 4 N -0.309 5.309 5 C -0.395 4.395 6 H 0.067 0.933 7 C -0.230 4.230 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.002 4.002 14 C 0.043 3.957 15 H 0.084 0.916 16 O -0.366 6.366 17 C -0.035 4.035 18 O -0.236 6.236 19 C 0.062 3.938 20 C -0.167 4.167 21 C -0.086 4.086 22 C -0.247 4.247 23 S 0.097 5.903 24 C -0.306 4.306 25 C -0.116 4.116 26 C -0.218 4.218 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.224 0.776 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.145 0.855 45 H 0.165 0.835 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.450 7.295 -18.719 20.240 hybrid contribution 0.226 -1.742 1.199 2.127 sum 2.676 5.553 -17.521 18.573 Atomic orbital electron populations 1.21661 0.94268 1.01607 1.01997 1.21953 0.96062 0.99432 0.99761 1.21037 0.83220 0.93902 0.99261 1.43822 1.00898 1.84590 1.01608 1.19200 1.03529 1.25788 0.90939 0.93267 1.25583 1.01885 0.95414 1.00143 1.70057 1.23870 1.20876 1.40668 0.85670 0.79168 0.77593 0.80075 1.20399 1.21504 1.21065 1.21363 0.99908 0.91983 0.86909 1.22536 0.83967 0.96186 0.93050 0.91559 1.86586 1.29194 1.57648 1.63220 1.23597 1.00224 0.81262 0.98423 1.86184 1.69802 1.30323 1.37341 1.19431 0.93104 0.95010 0.86243 1.20579 1.02562 0.95060 0.98498 1.20773 0.96470 0.98827 0.92501 1.21731 1.05958 0.96407 1.00604 1.85387 1.68797 1.15467 1.20664 1.23772 1.06742 0.94596 1.05515 1.21205 0.97671 0.96189 0.96513 1.21383 1.04575 0.98849 0.97016 0.92859 0.91647 0.92592 0.94106 0.95426 0.95067 0.92033 0.93820 0.93620 0.90145 0.77620 0.89801 0.91352 0.84161 0.83236 0.89204 0.88959 0.85542 0.83467 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.13 -5.00 6.26 30.59 0.19 -4.81 16 3 C 0.15 6.14 5.40 86.38 0.47 6.60 16 4 N -0.59 -28.25 2.37 -702.03 -1.67 -29.91 16 5 C -0.26 -14.32 9.49 84.03 0.80 -13.52 16 6 H 0.05 2.74 7.93 -2.91 -0.02 2.72 16 7 C -0.03 -1.78 4.94 84.86 0.42 -1.36 16 8 N -0.91 -50.67 11.34 21.65 0.25 -50.43 16 9 Si 0.95 44.30 29.61 68.60 2.03 46.33 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.13 5.40 4.99 86.38 0.43 5.83 16 14 C 0.10 4.02 3.52 30.59 0.11 4.12 16 15 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 16 O -0.56 -20.31 12.04 -144.36 -1.74 -22.04 16 17 C 0.04 1.29 4.37 71.98 0.31 1.60 16 18 O -0.32 -10.78 10.10 -88.98 -0.90 -11.67 16 19 C 0.11 3.17 6.69 22.50 0.15 3.32 16 20 C -0.15 -3.78 9.98 22.35 0.22 -3.56 16 21 C -0.06 -1.40 9.79 22.40 0.22 -1.18 16 22 C -0.13 -2.93 6.11 22.60 0.14 -2.80 16 23 S -0.14 -2.52 22.56 -56.49 -1.27 -3.79 16 24 C -0.14 -1.45 9.15 113.37 1.04 -0.42 16 25 C -0.09 -1.98 9.36 22.40 0.21 -1.77 16 26 C -0.20 -4.95 9.03 22.35 0.20 -4.74 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 33 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 34 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 35 H 0.05 1.76 8.07 -2.39 -0.02 1.75 16 36 H 0.08 3.99 5.33 -2.39 -0.01 3.98 16 37 H 0.38 10.37 8.79 -74.06 -0.65 9.72 16 38 H 0.08 2.18 7.65 -2.39 -0.02 2.17 16 39 H 0.07 2.15 7.67 -2.39 -0.02 2.14 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.09 0.89 7.74 -2.39 -0.02 0.87 16 43 H 0.09 0.86 7.75 -2.39 -0.02 0.84 16 44 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.15 2.36 5.87 -2.91 -0.02 2.34 16 46 H 0.14 3.19 6.29 -2.91 -0.02 3.17 16 Total: -1.00 -64.30 387.77 2.64 -61.67 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.32 Total: 25.69 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.62 Total: -15.84 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.42 Total: -80.34 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.64 Total: -33.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -1.27 Total: -3.79 kcal Total: -64.30 2.64 -61.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411278271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.980 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds