Wall clock time and date at job start Tue Mar 31 2020 14:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 H 1.08994 * 109.47781 * 177.90854 * 3 2 1 5 5 C 1.50704 * 109.47083 * 57.90572 * 3 2 1 6 6 H 1.08004 * 119.99704 * 240.00106 * 5 3 2 7 7 C 1.37876 * 119.99667 * 60.00609 * 5 3 2 8 8 N 1.31508 * 120.00206 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.46984 * 89.99640 * 9 7 5 11 11 H 1.48492 * 109.47182 * 209.99401 * 9 7 5 12 12 H 1.48500 * 109.47092 * 330.00119 * 9 7 5 13 13 N 1.46901 * 109.47025 * 297.90870 * 3 2 1 14 14 C 1.46903 * 110.99902 * 273.73558 * 13 3 2 15 15 C 1.53006 * 109.46768 * 175.11945 * 14 13 3 16 16 H 1.09000 * 109.46800 * 55.00571 * 15 14 13 17 17 C 1.52994 * 109.47178 * 294.99904 * 15 14 13 18 18 C 1.50703 * 109.46790 * 174.99738 * 15 14 13 19 19 C 1.38231 * 120.00236 * 240.00231 * 18 15 14 20 20 C 1.38237 * 120.00130 * 180.02562 * 19 18 15 21 21 C 1.38234 * 119.99640 * 359.97438 * 20 19 18 22 22 S 1.76200 * 119.99625 * 179.97438 * 21 20 19 23 23 C 1.81397 * 104.45227 * 90.00056 * 22 21 20 24 24 O 1.42102 * 104.27867 * 333.93024 * 22 21 20 25 25 O 1.42099 * 104.27705 * 206.07606 * 22 21 20 26 26 C 1.38238 * 120.00435 * 0.25689 * 21 20 19 27 27 C 1.38230 * 119.99323 * 359.48938 * 26 21 20 28 28 H 1.09007 * 109.46865 * 174.42457 * 1 2 3 29 29 H 1.08996 * 109.47582 * 294.42803 * 1 2 3 30 30 H 1.08998 * 109.46845 * 54.42714 * 1 2 3 31 31 H 1.09003 * 109.47479 * 239.99741 * 2 1 3 32 32 H 1.09003 * 109.46771 * 119.99986 * 2 1 3 33 33 H 0.97008 * 120.00093 * 179.97438 * 8 7 5 34 34 H 1.00903 * 111.00171 * 149.77645 * 13 3 2 35 35 H 1.08996 * 109.47041 * 55.12095 * 14 13 3 36 36 H 1.08993 * 109.46916 * 295.12162 * 14 13 3 37 37 H 1.09000 * 109.46848 * 180.02562 * 17 15 14 38 38 H 1.09006 * 109.47146 * 299.99895 * 17 15 14 39 39 H 1.08995 * 109.47472 * 60.00404 * 17 15 14 40 40 H 1.08001 * 119.99688 * 0.02562 * 19 18 15 41 41 H 1.07999 * 119.99915 * 179.97438 * 20 19 18 42 42 H 1.09002 * 109.47055 * 300.00456 * 23 22 21 43 43 H 1.08993 * 109.47365 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46941 * 59.99572 * 23 22 21 45 45 H 1.07994 * 119.99563 * 179.72432 * 26 21 20 46 46 H 1.08002 * 119.99517 * 180.23384 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4427 0.0375 5 6 1.4958 2.1677 1.2037 6 1 0.8789 3.0445 1.0725 7 6 1.7856 1.7120 2.4723 8 7 2.5364 0.6442 2.6319 9 14 1.1115 2.6114 3.9644 10 1 -0.2102 2.0417 4.3305 11 1 2.0510 2.4540 5.1034 12 1 0.9576 4.0535 3.6453 13 7 1.5921 2.1202 -1.2239 14 6 2.5305 1.8851 -2.3294 15 6 1.9712 2.5020 -3.6130 16 1 1.7537 3.5567 -3.4444 17 6 0.6861 1.7734 -4.0111 18 6 2.9871 2.3691 -4.7182 19 6 3.4848 3.4994 -5.3392 20 6 4.4162 3.3774 -6.3533 21 6 4.8503 2.1252 -6.7461 22 16 6.0370 1.9697 -8.0392 23 6 7.6395 2.0089 -7.1902 24 8 5.8584 3.1424 -8.8216 25 8 5.7934 0.6806 -8.5853 26 6 4.3490 0.9946 -6.1285 27 6 3.4215 1.1169 -5.1108 28 1 -0.3633 -1.0229 -0.0999 29 1 -0.3634 0.4250 0.9356 30 1 -0.3633 0.5978 -0.8359 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7406 0.3238 3.5245 34 1 1.4623 3.1079 -1.0635 35 1 2.6648 0.8127 -2.4702 36 1 3.4910 2.3437 -2.0944 37 1 0.2880 2.2126 -4.9258 38 1 0.9038 0.7187 -4.1797 39 1 -0.0486 1.8695 -3.2118 40 1 3.1459 4.4777 -5.0319 41 1 4.8048 4.2605 -6.8387 42 1 7.7434 2.9521 -6.6537 43 1 8.4412 1.9179 -7.9229 44 1 7.6967 1.1809 -6.4836 45 1 4.6849 0.0161 -6.4385 46 1 3.0327 0.2338 -4.6257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449244560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:03 Heat of formation + Delta-G solvation = -57.198168 kcal Electronic energy + Delta-G solvation = -25309.931219 eV Core-core repulsion = 21712.371969 eV Total energy + Delta-G solvation = -3597.559251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.76018 -37.35421 -36.84597 -36.19111 -34.74515 -32.13645 -31.22204 -30.65078 -29.91368 -29.30487 -26.59206 -24.90991 -23.44755 -23.21167 -22.68734 -20.13880 -19.26858 -19.02777 -18.04209 -16.48604 -16.44265 -16.32645 -15.66448 -15.18034 -14.93890 -14.69723 -14.39405 -13.98653 -13.73374 -13.65783 -13.55711 -13.39292 -13.25678 -12.98631 -12.66158 -12.34077 -12.26725 -12.23555 -11.89617 -11.72295 -11.53671 -11.45522 -11.29559 -11.10966 -10.98558 -10.84967 -10.64124 -10.52806 -10.36362 -10.03921 -9.78520 -9.41505 -9.18208 -9.15197 -8.81766 -8.51390 -7.30159 -6.06441 -4.11941 -0.21573 0.68897 1.17588 2.60746 3.25856 3.26167 3.33001 3.35172 3.70003 3.83922 4.35217 4.41294 4.47481 4.58931 4.68481 4.73949 5.09282 5.19943 5.24895 5.27403 5.31066 5.32783 5.47345 5.62082 5.69215 5.80386 5.92315 6.01796 6.04574 6.11589 6.23159 6.30112 6.48780 6.52199 6.61201 6.68330 6.72110 6.82225 7.19073 7.26059 7.45894 7.69344 7.75163 7.79793 8.20700 8.32710 8.60978 8.97042 9.53097 10.99555 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.002367 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.078311 B =11827.093631 C =12009.785378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.071 3.929 15 C -0.060 4.060 16 H 0.079 0.921 17 C -0.131 4.131 18 C -0.007 4.007 19 C -0.141 4.141 20 C -0.024 4.024 21 C -0.671 4.671 22 S 2.503 3.497 23 C -0.651 4.651 24 O -0.942 6.942 25 O -0.941 6.941 26 C -0.023 4.023 27 C -0.134 4.134 28 H 0.012 0.988 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.008 0.992 32 H 0.084 0.916 33 H 0.261 0.739 34 H 0.330 0.670 35 H 0.066 0.934 36 H 0.018 0.982 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 2.882 -18.210 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.110 3.890 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.059 4.059 15 C -0.079 4.079 16 H 0.097 0.903 17 C -0.189 4.189 18 C -0.008 4.008 19 C -0.159 4.159 20 C -0.043 4.043 21 C -0.759 4.759 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.939 6.939 25 O -0.938 6.938 26 C -0.042 4.042 27 C -0.153 4.153 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.771 2.165 -19.105 20.385 hybrid contribution 0.529 1.053 2.135 2.439 sum 7.300 3.219 -16.970 18.752 Atomic orbital electron populations 1.21437 0.97480 0.97116 1.01572 1.21414 0.95101 0.98199 0.99206 1.19098 0.93210 0.91620 0.85098 0.98351 1.21178 1.31669 1.11987 0.90359 0.92320 1.24880 0.95054 0.95018 0.98874 1.69884 1.37352 1.23124 1.22378 0.86583 0.78814 0.80070 0.82438 1.20620 1.21348 1.19997 1.60651 1.47213 1.16113 1.07393 1.21904 0.93583 0.99968 0.90492 1.20385 0.93669 1.01424 0.92415 0.90307 1.21705 0.96610 0.99507 1.01028 1.20443 0.93356 0.93129 0.93889 1.21243 0.98574 0.98819 0.97304 1.20878 0.94127 0.95577 0.93674 1.30337 1.22309 0.99835 1.23405 1.04984 0.76899 0.74559 0.75234 1.30228 1.22164 1.12272 1.15377 1.93575 1.85096 1.49299 1.65967 1.93580 1.84067 1.40485 1.75684 1.20915 0.93678 0.97221 0.92357 1.21229 0.98344 0.97919 0.97759 0.96911 0.92984 0.93404 0.97280 0.89746 0.92951 0.85314 0.91523 0.96381 0.93816 0.92890 0.90208 0.85098 0.84380 0.84971 0.85170 0.84889 0.84281 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.46 37.16 0.35 -2.23 16 2 C -0.10 -2.35 5.57 -26.73 -0.15 -2.50 16 3 C 0.22 5.14 2.30 -68.86 -0.16 4.98 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 5 C -0.51 -13.26 7.33 -34.44 -0.25 -13.52 16 6 H 0.06 1.50 7.60 -52.48 -0.40 1.11 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.56 11.34 55.43 0.63 -23.93 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.68 -13.14 4.97 -107.95 -0.54 -13.68 16 14 C 0.07 1.15 4.58 -3.82 -0.02 1.13 16 15 C -0.06 -0.78 2.75 -91.77 -0.25 -1.04 16 16 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 17 C -0.13 -1.69 8.89 37.15 0.33 -1.36 16 18 C -0.01 -0.09 4.78 -104.62 -0.50 -0.59 16 19 C -0.14 -1.54 9.67 -39.58 -0.38 -1.92 16 20 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 21 C -0.67 -6.72 5.66 -39.58 -0.22 -6.94 16 22 S 2.50 20.98 5.80 -107.50 -0.62 20.35 16 23 C -0.65 -2.93 10.80 101.05 1.09 -1.84 16 24 O -0.94 -10.67 17.13 -57.54 -0.99 -11.66 16 25 O -0.94 -10.85 17.12 -57.54 -0.98 -11.83 16 26 C -0.02 -0.24 9.47 -39.58 -0.37 -0.62 16 27 C -0.13 -1.57 8.76 -39.58 -0.35 -1.92 16 28 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 30 H 0.05 0.98 7.50 -51.93 -0.39 0.60 16 31 H 0.01 0.19 7.44 -51.93 -0.39 -0.20 16 32 H 0.08 2.21 6.13 -51.93 -0.32 1.89 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.33 6.26 8.25 -39.29 -0.32 5.94 16 35 H 0.07 1.13 6.83 -51.93 -0.35 0.77 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.67 7.39 -51.93 -0.38 0.29 16 39 H 0.08 1.14 7.75 -51.93 -0.40 0.74 16 40 H 0.13 1.21 7.95 -52.49 -0.42 0.79 16 41 H 0.14 1.12 7.57 -52.49 -0.40 0.73 16 42 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.14 1.23 7.56 -52.49 -0.40 0.83 16 46 H 0.13 1.49 7.16 -52.49 -0.38 1.11 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -32.45 381.38 -10.55 -43.00 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.41 Total: 3.73 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -1.36 Total: -27.37 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.09 Total: -37.61 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.97 Total: -23.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 20.98 SS G_CDS: -0.62 Total: 20.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.45 -10.55 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.200 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds