Wall clock time and date at job start Tue Mar 31 2020 14:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 H 1.08994 * 109.47781 * 177.90854 * 3 2 1 5 5 C 1.50704 * 109.47083 * 57.90572 * 3 2 1 6 6 H 1.08004 * 119.99704 * 240.00106 * 5 3 2 7 7 C 1.37876 * 119.99667 * 60.00609 * 5 3 2 8 8 N 1.31508 * 120.00206 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.46984 * 89.99640 * 9 7 5 11 11 H 1.48492 * 109.47182 * 209.99401 * 9 7 5 12 12 H 1.48500 * 109.47092 * 330.00119 * 9 7 5 13 13 N 1.46901 * 109.47025 * 297.90870 * 3 2 1 14 14 C 1.46903 * 110.99902 * 273.73558 * 13 3 2 15 15 C 1.53006 * 109.46768 * 175.11945 * 14 13 3 16 16 H 1.09000 * 109.46800 * 55.00571 * 15 14 13 17 17 C 1.52994 * 109.47178 * 294.99904 * 15 14 13 18 18 C 1.50703 * 109.46790 * 174.99738 * 15 14 13 19 19 C 1.38231 * 120.00236 * 240.00231 * 18 15 14 20 20 C 1.38237 * 120.00130 * 180.02562 * 19 18 15 21 21 C 1.38234 * 119.99640 * 359.97438 * 20 19 18 22 22 S 1.76200 * 119.99625 * 179.97438 * 21 20 19 23 23 C 1.81397 * 104.45227 * 90.00056 * 22 21 20 24 24 O 1.42102 * 104.27867 * 333.93024 * 22 21 20 25 25 O 1.42099 * 104.27705 * 206.07606 * 22 21 20 26 26 C 1.38238 * 120.00435 * 0.25689 * 21 20 19 27 27 C 1.38230 * 119.99323 * 359.48938 * 26 21 20 28 28 H 1.09007 * 109.46865 * 174.42457 * 1 2 3 29 29 H 1.08996 * 109.47582 * 294.42803 * 1 2 3 30 30 H 1.08998 * 109.46845 * 54.42714 * 1 2 3 31 31 H 1.09003 * 109.47479 * 239.99741 * 2 1 3 32 32 H 1.09003 * 109.46771 * 119.99986 * 2 1 3 33 33 H 0.97008 * 120.00093 * 179.97438 * 8 7 5 34 34 H 1.00903 * 111.00171 * 149.77645 * 13 3 2 35 35 H 1.08996 * 109.47041 * 55.12095 * 14 13 3 36 36 H 1.08993 * 109.46916 * 295.12162 * 14 13 3 37 37 H 1.09000 * 109.46848 * 180.02562 * 17 15 14 38 38 H 1.09006 * 109.47146 * 299.99895 * 17 15 14 39 39 H 1.08995 * 109.47472 * 60.00404 * 17 15 14 40 40 H 1.08001 * 119.99688 * 0.02562 * 19 18 15 41 41 H 1.07999 * 119.99915 * 179.97438 * 20 19 18 42 42 H 1.09002 * 109.47055 * 300.00456 * 23 22 21 43 43 H 1.08993 * 109.47365 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46941 * 59.99572 * 23 22 21 45 45 H 1.07994 * 119.99563 * 179.72432 * 26 21 20 46 46 H 1.08002 * 119.99517 * 180.23384 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4427 0.0375 5 6 1.4958 2.1677 1.2037 6 1 0.8789 3.0445 1.0725 7 6 1.7856 1.7120 2.4723 8 7 2.5364 0.6442 2.6319 9 14 1.1115 2.6114 3.9644 10 1 -0.2102 2.0417 4.3305 11 1 2.0510 2.4540 5.1034 12 1 0.9576 4.0535 3.6453 13 7 1.5921 2.1202 -1.2239 14 6 2.5305 1.8851 -2.3294 15 6 1.9712 2.5020 -3.6130 16 1 1.7537 3.5567 -3.4444 17 6 0.6861 1.7734 -4.0111 18 6 2.9871 2.3691 -4.7182 19 6 3.4848 3.4994 -5.3392 20 6 4.4162 3.3774 -6.3533 21 6 4.8503 2.1252 -6.7461 22 16 6.0370 1.9697 -8.0392 23 6 7.6395 2.0089 -7.1902 24 8 5.8584 3.1424 -8.8216 25 8 5.7934 0.6806 -8.5853 26 6 4.3490 0.9946 -6.1285 27 6 3.4215 1.1169 -5.1108 28 1 -0.3633 -1.0229 -0.0999 29 1 -0.3634 0.4250 0.9356 30 1 -0.3633 0.5978 -0.8359 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7406 0.3238 3.5245 34 1 1.4623 3.1079 -1.0635 35 1 2.6648 0.8127 -2.4702 36 1 3.4910 2.3437 -2.0944 37 1 0.2880 2.2126 -4.9258 38 1 0.9038 0.7187 -4.1797 39 1 -0.0486 1.8695 -3.2118 40 1 3.1459 4.4777 -5.0319 41 1 4.8048 4.2605 -6.8387 42 1 7.7434 2.9521 -6.6537 43 1 8.4412 1.9179 -7.9229 44 1 7.6967 1.1809 -6.4836 45 1 4.6849 0.0161 -6.4385 46 1 3.0327 0.2338 -4.6257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449244560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:02 Heat of formation + Delta-G solvation = -78.238543 kcal Electronic energy + Delta-G solvation = -25310.843599 eV Core-core repulsion = 21712.371969 eV Total energy + Delta-G solvation = -3598.471630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.64833 -38.35650 -38.12119 -36.97182 -36.14561 -33.87960 -32.26090 -32.02932 -30.62172 -30.12773 -28.34514 -26.27191 -25.09299 -24.35150 -23.67670 -21.27784 -20.80868 -19.99163 -18.80141 -18.30735 -17.20362 -17.10791 -16.91967 -16.42585 -16.18614 -15.88757 -15.58833 -15.33712 -15.01195 -14.67466 -14.43398 -14.28453 -14.11519 -13.93774 -13.88020 -13.74861 -13.43491 -13.13190 -13.07686 -13.02551 -12.86996 -12.72139 -12.54955 -12.43315 -12.31270 -12.20957 -12.04101 -11.89357 -11.61987 -11.58645 -11.39504 -11.20819 -10.77723 -10.52924 -10.06405 -10.00074 -8.97240 -8.09018 -6.20756 -0.83411 -0.15059 0.34389 1.42014 1.43988 1.52351 1.94589 2.42203 2.45965 3.05367 3.20194 3.21335 3.47750 3.72073 3.96719 3.99938 4.04043 4.12046 4.22401 4.34173 4.38313 4.47426 4.52820 4.64623 4.76825 4.81507 4.83081 4.89075 4.97710 4.97986 5.01123 5.06837 5.10648 5.16764 5.24090 5.32520 5.42492 5.48441 5.58972 5.62775 5.73174 5.83631 5.89022 5.92410 6.29313 6.50397 6.81830 7.05862 7.48246 8.96075 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.002367 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.078311 B =11827.093631 C =12009.785378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C 0.224 3.776 4 H -0.039 1.039 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.076 3.924 15 C -0.047 4.047 16 H 0.087 0.913 17 C -0.127 4.127 18 C -0.025 4.025 19 C -0.146 4.146 20 C -0.030 4.030 21 C -0.672 4.672 22 S 2.513 3.487 23 C -0.628 4.628 24 O -0.975 6.975 25 O -0.978 6.978 26 C -0.033 4.033 27 C -0.146 4.146 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.053 0.947 33 H 0.260 0.740 34 H 0.333 0.667 35 H 0.058 0.942 36 H 0.008 0.992 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 3.876 -19.071 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.115 3.885 4 H -0.021 1.021 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.305 5.305 14 C -0.053 4.053 15 C -0.066 4.066 16 H 0.105 0.895 17 C -0.184 4.184 18 C -0.025 4.025 19 C -0.164 4.164 20 C -0.049 4.049 21 C -0.758 4.758 22 S 2.696 3.304 23 C -0.782 4.782 24 O -0.973 6.973 25 O -0.975 6.975 26 C -0.051 4.051 27 C -0.165 4.165 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.254 3.171 -19.992 21.503 hybrid contribution 0.483 0.737 2.336 2.496 sum 7.737 3.908 -17.657 19.669 Atomic orbital electron populations 1.21301 0.95969 0.98392 1.00731 1.21286 0.96313 0.97705 0.98200 1.18868 0.90820 0.92260 0.86509 1.02124 1.21470 1.31293 1.11990 0.91298 0.92293 1.25607 0.95388 0.95710 1.01522 1.70023 1.38514 1.24404 1.22747 0.85646 0.78041 0.79270 0.79206 1.20365 1.21375 1.19189 1.60563 1.47664 1.15960 1.06289 1.21884 0.92737 0.99732 0.90994 1.20204 0.93950 1.01455 0.90993 0.89481 1.21650 0.96089 0.99569 1.01120 1.20368 0.94006 0.93832 0.94323 1.21477 0.98477 0.99152 0.97316 1.21181 0.93830 0.96415 0.93454 1.30623 1.22522 0.99626 1.23000 1.04643 0.78007 0.72991 0.74762 1.30056 1.18119 1.14181 1.15816 1.93530 1.86271 1.50104 1.67352 1.93532 1.85379 1.41777 1.76829 1.21125 0.93556 0.98244 0.92209 1.21341 0.98915 0.97913 0.98356 0.94951 0.95177 0.92334 0.96172 0.92804 0.93116 0.85032 0.92337 0.97381 0.92373 0.93077 0.91611 0.83510 0.82433 0.82986 0.82759 0.83258 0.83005 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.46 71.98 0.68 -3.89 16 2 C -0.10 -4.55 5.57 30.59 0.17 -4.38 16 3 C 0.22 10.79 2.30 44.17 0.10 10.89 16 4 H -0.04 -2.13 7.84 -2.39 -0.02 -2.15 16 5 C -0.52 -27.19 7.33 25.60 0.19 -27.00 16 6 H 0.06 3.01 7.60 -2.91 -0.02 2.99 16 7 C 0.02 0.90 5.30 84.66 0.45 1.35 16 8 N -0.92 -51.72 11.34 21.45 0.24 -51.48 16 9 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 N -0.67 -25.97 4.97 -495.45 -2.46 -28.43 16 14 C 0.08 2.49 4.58 86.30 0.40 2.89 16 15 C -0.05 -1.19 2.75 -11.54 -0.03 -1.23 16 16 H 0.09 2.06 7.88 -2.39 -0.02 2.04 16 17 C -0.13 -3.15 8.89 71.98 0.64 -2.51 16 18 C -0.02 -0.58 4.78 -19.87 -0.09 -0.67 16 19 C -0.15 -2.97 9.67 22.27 0.22 -2.75 16 20 C -0.03 -0.56 9.47 22.27 0.21 -0.35 16 21 C -0.67 -12.53 5.66 22.27 0.13 -12.40 16 22 S 2.51 38.23 5.80 -56.49 -0.33 37.91 16 23 C -0.63 -3.39 10.80 113.37 1.22 -2.17 16 24 O -0.98 -20.93 17.13 -127.65 -2.19 -23.12 16 25 O -0.98 -21.80 17.12 -127.65 -2.19 -23.99 16 26 C -0.03 -0.67 9.47 22.27 0.21 -0.46 16 27 C -0.15 -3.37 8.76 22.27 0.20 -3.17 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.03 1.39 7.37 -2.39 -0.02 1.37 16 30 H 0.06 2.35 7.50 -2.39 -0.02 2.34 16 31 H 0.02 0.87 7.44 -2.39 -0.02 0.85 16 32 H 0.05 2.89 6.13 -2.39 -0.01 2.87 16 33 H 0.26 14.04 8.31 -92.70 -0.77 13.26 16 34 H 0.33 12.53 8.25 -89.69 -0.74 11.79 16 35 H 0.06 2.00 6.83 -2.39 -0.02 1.98 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.27 7.39 -2.38 -0.02 1.25 16 39 H 0.06 1.81 7.75 -2.39 -0.02 1.79 16 40 H 0.15 2.42 7.95 -2.91 -0.02 2.39 16 41 H 0.16 2.23 7.57 -2.91 -0.02 2.21 16 42 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.15 0.47 8.14 -2.39 -0.02 0.46 16 45 H 0.15 2.59 7.56 -2.91 -0.02 2.56 16 46 H 0.13 2.96 7.16 -2.91 -0.02 2.94 16 Total: -1.00 -70.61 381.38 0.02 -70.60 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.23 Total: 19.86 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 4.68 Total: -45.85 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.22 Total: -79.91 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -4.37 Total: -47.11 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.33 Total: 37.91 kcal Total: -70.61 0.02 -70.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.643 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds