Wall clock time and date at job start Tue Mar 31 2020 14:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46889 * 2 1 4 4 H 1.09004 * 109.47123 * 54.98466 * 3 2 1 5 5 C 1.50704 * 109.47069 * 174.98443 * 3 2 1 6 6 H 1.07994 * 120.00300 * 119.99888 * 5 3 2 7 7 C 1.37878 * 119.99513 * 300.00041 * 5 3 2 8 8 N 1.31519 * 119.99694 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 120.00460 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46682 * 89.99903 * 9 7 5 11 11 H 1.48502 * 109.47019 * 209.99923 * 9 7 5 12 12 H 1.48494 * 109.46814 * 330.00436 * 9 7 5 13 13 N 1.46898 * 109.47206 * 294.98091 * 3 2 1 14 14 C 1.46903 * 111.00005 * 153.60538 * 13 3 2 15 15 C 1.52998 * 109.47002 * 185.62134 * 14 13 3 16 16 H 1.09002 * 109.47056 * 54.99981 * 15 14 13 17 17 C 1.52994 * 109.47124 * 294.99953 * 15 14 13 18 18 C 1.50700 * 109.46723 * 174.99686 * 15 14 13 19 19 C 1.38233 * 120.00304 * 239.99870 * 18 15 14 20 20 C 1.38231 * 120.00362 * 180.02562 * 19 18 15 21 21 C 1.38240 * 119.99933 * 359.97438 * 20 19 18 22 22 S 1.76195 * 120.00054 * 179.97438 * 21 20 19 23 23 C 1.81406 * 104.44852 * 90.00472 * 22 21 20 24 24 O 1.42098 * 104.28079 * 333.93180 * 22 21 20 25 25 O 1.42098 * 104.27901 * 206.07112 * 22 21 20 26 26 C 1.38240 * 119.99712 * 0.25948 * 21 20 19 27 27 C 1.38233 * 119.99833 * 59.98452 * 18 15 14 28 28 H 1.08998 * 109.47523 * 297.38226 * 1 2 3 29 29 H 1.08997 * 109.47079 * 57.38580 * 1 2 3 30 30 H 1.09000 * 109.47108 * 177.38091 * 1 2 3 31 31 H 1.09001 * 109.46858 * 240.00021 * 2 1 3 32 32 H 1.09003 * 109.46877 * 120.00082 * 2 1 3 33 33 H 0.97005 * 119.99798 * 180.02562 * 8 7 5 34 34 H 1.00900 * 111.00339 * 277.56137 * 13 3 2 35 35 H 1.09002 * 109.46740 * 65.61947 * 14 13 3 36 36 H 1.09000 * 109.46922 * 305.62095 * 14 13 3 37 37 H 1.09002 * 109.47177 * 299.99954 * 17 15 14 38 38 H 1.08995 * 109.47479 * 59.99931 * 17 15 14 39 39 H 1.09004 * 109.46994 * 180.02562 * 17 15 14 40 40 H 1.08005 * 119.99664 * 359.97438 * 19 18 15 41 41 H 1.08000 * 120.00437 * 179.97438 * 20 19 18 42 42 H 1.09005 * 109.46859 * 299.99599 * 23 22 21 43 43 H 1.09003 * 109.47184 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47300 * 59.99415 * 23 22 21 45 45 H 1.08000 * 119.99713 * 179.72462 * 26 21 20 46 46 H 1.07999 * 120.00527 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9816 0.8417 5 6 3.5419 1.4444 0.1242 6 1 4.1474 1.8888 -0.6517 7 6 4.1429 0.8785 1.2286 8 7 5.4536 0.8806 1.3373 9 14 3.0956 0.1103 2.5712 10 1 2.8738 -1.3258 2.2650 11 1 3.7931 0.2363 3.8761 12 1 1.7874 0.8096 2.6394 13 7 1.6517 2.0991 -1.2554 14 6 1.5406 3.5530 -1.0766 15 6 1.0011 4.1850 -2.3613 16 1 0.0599 3.7074 -2.6337 17 6 2.0161 3.9924 -3.4897 18 6 0.7711 5.6576 -2.1383 19 6 -0.4954 6.1903 -2.2909 20 6 -0.7062 7.5411 -2.0869 21 6 0.3493 8.3593 -1.7299 22 16 0.0806 10.0812 -1.4706 23 6 -0.3236 10.2157 0.2928 24 8 -1.0568 10.3824 -2.2673 25 8 1.3422 10.6772 -1.7397 26 6 1.6167 7.8274 -1.5820 27 6 1.8265 6.4756 -1.7810 28 1 -0.3634 0.4726 0.9125 29 1 -0.3633 0.5539 -0.8656 30 1 -0.3633 -1.0266 -0.0470 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8764 0.4822 2.1141 34 1 2.2987 1.8743 -1.9963 35 1 2.5235 3.9676 -0.8526 36 1 0.8597 3.7668 -0.2527 37 1 2.9573 4.4700 -3.2173 38 1 2.1825 2.9273 -3.6509 39 1 1.6319 4.4431 -4.4048 40 1 -1.3199 5.5511 -2.5703 41 1 -1.6956 7.9573 -2.2065 42 1 -1.2162 9.6279 0.5067 43 1 -0.5078 11.2601 0.5447 44 1 0.5098 9.8399 0.8863 45 1 2.4422 8.4674 -1.3074 46 1 2.8159 6.0595 -1.6612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449244561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:07 Heat of formation + Delta-G solvation = -76.804701 kcal Electronic energy + Delta-G solvation = -25398.053689 eV Core-core repulsion = 21799.644235 eV Total energy + Delta-G solvation = -3598.409454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65680 -38.48491 -38.11396 -36.96631 -36.19832 -34.16164 -32.73919 -32.02174 -30.63969 -30.13475 -28.84282 -26.56061 -24.65499 -24.00577 -23.57793 -21.66130 -20.99100 -19.98123 -19.11724 -18.77312 -17.23819 -17.13755 -17.10083 -16.59300 -16.26272 -15.77001 -15.56162 -15.40200 -14.99269 -14.85243 -14.45814 -14.26090 -14.10832 -14.08704 -13.92823 -13.81846 -13.59315 -13.43126 -13.24870 -13.12348 -13.01761 -12.94773 -12.60702 -12.43215 -12.29770 -12.18265 -11.95981 -11.89457 -11.72333 -11.59899 -11.38729 -11.28863 -11.18047 -10.70453 -10.05882 -9.99809 -9.09379 -8.34677 -6.39588 -0.82593 -0.14817 0.34823 1.28968 1.33390 1.43935 1.95370 2.28264 2.45436 3.01065 3.06163 3.22173 3.41236 3.74652 3.88491 3.98313 4.10491 4.12545 4.16651 4.25811 4.38410 4.40668 4.47824 4.49163 4.53570 4.68357 4.78544 4.83202 4.87655 4.95088 4.98238 4.99983 5.01165 5.11581 5.15153 5.17769 5.22403 5.29418 5.37316 5.46006 5.50032 5.62376 5.66145 5.89424 6.07033 6.38909 6.62340 6.79262 7.29598 8.81473 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.002724 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.936165 B =10275.537732 C =10703.457766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.190 3.810 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.034 0.966 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.247 1.247 13 N -0.667 5.667 14 C 0.078 3.922 15 C -0.047 4.047 16 H 0.101 0.899 17 C -0.142 4.142 18 C -0.024 4.024 19 C -0.140 4.140 20 C -0.029 4.029 21 C -0.671 4.671 22 S 2.514 3.486 23 C -0.627 4.627 24 O -0.973 6.973 25 O -0.980 6.980 26 C -0.034 4.034 27 C -0.149 4.149 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.334 0.666 35 H 0.011 0.989 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.353 15.078 -3.592 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.080 3.920 4 H 0.041 0.959 5 C -0.584 4.584 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.230 1.230 12 H -0.171 1.171 13 N -0.296 5.296 14 C -0.052 4.052 15 C -0.065 4.065 16 H 0.119 0.881 17 C -0.199 4.199 18 C -0.024 4.024 19 C -0.158 4.158 20 C -0.048 4.048 21 C -0.756 4.756 22 S 2.697 3.303 23 C -0.781 4.781 24 O -0.971 6.971 25 O -0.977 6.977 26 C -0.053 4.053 27 C -0.168 4.168 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.172 0.828 43 H 0.172 0.828 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.827 15.550 -4.056 23.268 hybrid contribution 1.702 -1.062 1.241 2.359 sum -15.125 14.488 -2.815 21.133 Atomic orbital electron populations 1.21649 0.94453 1.01186 1.01908 1.21758 0.96597 0.97579 0.99632 1.19420 0.91079 0.92140 0.89368 0.95899 1.22071 0.92881 1.37612 1.05786 0.94780 1.25854 0.95763 0.96108 1.00548 1.70066 1.10875 1.46866 1.30844 0.85837 0.79463 0.79655 0.77363 1.19243 1.22969 1.17079 1.60775 1.53761 1.07520 1.07569 1.21807 0.98084 0.88604 0.96701 1.20224 1.01151 0.90046 0.95113 0.88080 1.21815 0.98065 1.02310 0.97732 1.20335 0.93790 0.95541 0.92783 1.21490 0.96900 0.95860 1.01565 1.21215 0.98659 0.93230 0.91668 1.30627 1.00483 1.25899 1.18641 1.04619 0.73270 0.73029 0.79386 1.30051 1.14413 1.13851 1.19796 1.93529 1.52617 1.83106 1.67816 1.93533 1.43445 1.75523 1.85230 1.21077 0.95796 0.95316 0.93121 1.21310 0.99744 0.94080 1.01701 0.94064 0.90894 0.92572 0.92660 0.95110 0.92618 0.84828 0.97117 0.92190 0.93625 0.91759 0.91356 0.82931 0.82145 0.82801 0.82814 0.83440 0.83479 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.83 71.98 0.71 -3.60 16 2 C -0.12 -4.74 5.11 30.59 0.16 -4.59 16 3 C 0.19 8.36 1.57 44.17 0.07 8.43 16 4 H 0.02 1.06 6.74 -2.39 -0.02 1.04 16 5 C -0.54 -29.73 9.08 25.60 0.23 -29.50 16 6 H 0.03 2.06 7.96 -2.91 -0.02 2.04 16 7 C 0.02 0.88 5.45 84.65 0.46 1.34 16 8 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 9 Si 0.95 44.28 24.41 68.60 1.67 45.96 16 10 H -0.27 -11.88 6.83 99.48 0.68 -11.20 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 13 N -0.67 -24.40 5.60 -495.44 -2.78 -27.17 16 14 C 0.08 2.56 4.71 86.30 0.41 2.97 16 15 C -0.05 -1.17 2.77 -11.54 -0.03 -1.20 16 16 H 0.10 2.29 7.88 -2.39 -0.02 2.27 16 17 C -0.14 -3.51 8.77 71.98 0.63 -2.88 16 18 C -0.02 -0.56 4.78 -19.87 -0.09 -0.66 16 19 C -0.14 -2.75 9.67 22.27 0.22 -2.53 16 20 C -0.03 -0.53 9.47 22.27 0.21 -0.32 16 21 C -0.67 -12.84 5.66 22.27 0.13 -12.71 16 22 S 2.51 39.24 5.80 -56.49 -0.33 38.91 16 23 C -0.63 -3.61 10.80 113.37 1.22 -2.38 16 24 O -0.97 -20.82 17.13 -127.65 -2.19 -23.01 16 25 O -0.98 -22.79 17.12 -127.65 -2.19 -24.97 16 26 C -0.03 -0.76 9.47 22.27 0.21 -0.55 16 27 C -0.15 -3.73 8.76 22.27 0.20 -3.54 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 2.19 7.68 -2.39 -0.02 2.18 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.03 1.32 3.22 -2.39 -0.01 1.32 16 33 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 34 H 0.33 12.53 6.85 -89.69 -0.61 11.92 16 35 H 0.01 0.40 7.56 -2.39 -0.02 0.38 16 36 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 37 H 0.04 1.21 7.39 -2.39 -0.02 1.19 16 38 H 0.06 1.64 6.81 -2.39 -0.02 1.62 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.15 2.28 7.95 -2.91 -0.02 2.25 16 41 H 0.16 2.14 7.57 -2.91 -0.02 2.12 16 42 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.15 2.87 7.56 -2.91 -0.02 2.84 16 46 H 0.12 3.24 7.16 -2.91 -0.02 3.22 16 Total: -1.00 -75.50 375.94 -0.51 -76.01 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.27 Total: 23.92 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 4.72 Total: -51.72 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.48 Total: -85.09 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -4.37 Total: -47.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.67 Total: 45.96 kcal Atomic # 16 Polarization: 39.24 SS G_CDS: -0.33 Total: 38.91 kcal Total: -75.50 -0.51 -76.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.796 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds