Wall clock time and date at job start Tue Mar 31 2020 14:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47179 * 2 1 4 4 H 1.09000 * 109.46922 * 179.88896 * 3 2 1 5 5 C 1.50706 * 109.46818 * 299.88466 * 3 2 1 6 6 H 1.07996 * 119.99831 * 119.99608 * 5 3 2 7 7 C 1.37869 * 119.99674 * 300.00051 * 5 3 2 8 8 N 1.31512 * 120.00703 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46957 * 60.00345 * 9 7 5 11 11 H 1.48506 * 109.47374 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47559 * 300.00339 * 9 7 5 13 13 N 1.46904 * 109.47225 * 59.88465 * 3 2 1 14 14 C 1.46899 * 110.99584 * 85.93824 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.56169 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 C 1.52998 * 109.47274 * 64.99986 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38239 * 119.99982 * 299.72940 * 18 15 14 20 20 C 1.38236 * 120.00096 * 179.81037 * 19 18 15 21 21 C 1.38236 * 119.99667 * 0.41694 * 20 19 18 22 22 S 1.76204 * 119.99635 * 179.79235 * 21 20 19 23 23 C 1.81395 * 104.44889 * 270.01960 * 22 21 20 24 24 O 1.42093 * 104.27920 * 26.09140 * 22 21 20 25 25 O 1.42098 * 104.27516 * 153.95039 * 22 21 20 26 26 C 1.38229 * 120.00471 * 359.81220 * 21 20 19 27 27 C 1.38238 * 120.00152 * 0.02562 * 26 21 20 28 28 H 1.09001 * 109.46975 * 175.59419 * 1 2 3 29 29 H 1.09004 * 109.47119 * 55.59398 * 1 2 3 30 30 H 1.09001 * 109.47661 * 295.59577 * 1 2 3 31 31 H 1.09004 * 109.47056 * 119.99277 * 2 1 3 32 32 H 1.08993 * 109.47162 * 239.99308 * 2 1 3 33 33 H 0.97000 * 120.00606 * 179.97438 * 8 7 5 34 34 H 1.00899 * 110.99843 * 209.89295 * 13 3 2 35 35 H 1.08995 * 109.47219 * 295.55869 * 14 13 3 36 36 H 1.08999 * 109.47280 * 55.56546 * 14 13 3 37 37 H 1.09000 * 109.46983 * 59.99906 * 17 15 14 38 38 H 1.09002 * 109.47556 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47425 * 299.99738 * 17 15 14 40 40 H 1.08000 * 119.99996 * 359.97438 * 19 18 15 41 41 H 1.08001 * 120.00016 * 180.20518 * 20 19 18 42 42 H 1.08996 * 109.47377 * 60.00246 * 23 22 21 43 43 H 1.09000 * 109.47448 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.47283 * 299.99950 * 23 22 21 45 45 H 1.08004 * 120.00657 * 179.97438 * 26 21 20 46 46 H 1.07995 * 120.00482 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0020 5 6 1.5400 2.1521 -1.2320 6 1 0.9188 3.0302 -1.1346 7 6 1.8754 1.6801 -2.4831 8 7 2.6313 0.6105 -2.6017 9 14 1.2550 2.5591 -4.0102 10 1 1.7496 3.9594 -4.0105 11 1 1.7529 1.8587 -5.2213 12 1 -0.2299 2.5587 -4.0128 13 7 1.5481 2.1359 1.1981 14 6 2.4416 1.9089 2.3417 15 6 1.9592 2.7330 3.5371 16 1 1.8807 3.7811 3.2480 17 6 0.5883 2.2242 3.9873 18 6 2.9426 2.5968 4.6708 19 6 3.2046 1.3525 5.2129 20 6 4.1097 1.2270 6.2502 21 6 4.7463 2.3472 6.7512 22 16 5.8958 2.1880 8.0771 23 6 4.8879 2.3698 9.5743 24 8 6.3819 0.8578 7.9617 25 8 6.7649 3.3015 7.9229 26 6 4.4808 3.5921 6.2124 27 6 3.5782 3.7172 5.1728 28 1 -0.3633 -1.0246 -0.0789 29 1 -0.3633 0.5807 -0.8479 30 1 -0.3634 0.4440 0.9268 31 1 1.8933 -0.5137 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 2.8670 0.2782 -3.4820 34 1 1.4296 3.1223 1.0219 35 1 2.4352 0.8509 2.6035 36 1 3.4547 2.2116 2.0770 37 1 0.6667 1.1762 4.2764 38 1 0.2447 2.8110 4.8393 39 1 -0.1231 2.3228 3.1674 40 1 2.7042 0.4779 4.8242 41 1 4.3168 0.2544 6.6715 42 1 4.1285 1.5883 9.5982 43 1 5.5255 2.2842 10.4542 44 1 4.4041 3.3466 9.5702 45 1 4.9778 4.4673 6.6041 46 1 3.3704 4.6899 4.7521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449244562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:13 Heat of formation + Delta-G solvation = -56.792476 kcal Electronic energy + Delta-G solvation = -25281.533113 eV Core-core repulsion = 21683.991454 eV Total energy + Delta-G solvation = -3597.541659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.76806 -37.35471 -36.84053 -36.18649 -34.74988 -32.11694 -31.22679 -30.65183 -29.94157 -29.29416 -26.59438 -24.91577 -23.44356 -23.19162 -22.67788 -20.16333 -19.27108 -19.01730 -18.04624 -16.51759 -16.42475 -16.32410 -15.66651 -15.16576 -14.91094 -14.67622 -14.38541 -13.99279 -13.80788 -13.61605 -13.59078 -13.44367 -13.14602 -12.98411 -12.73516 -12.33548 -12.26692 -12.23105 -11.91405 -11.71045 -11.50668 -11.44360 -11.38736 -11.09382 -10.94663 -10.86131 -10.65218 -10.53146 -10.36964 -10.01540 -9.74607 -9.41491 -9.18461 -9.14848 -8.79945 -8.48253 -7.27966 -6.03641 -4.09701 -0.22796 0.68318 1.17072 2.60313 3.25911 3.28887 3.34178 3.36131 3.70017 3.82088 4.36951 4.37651 4.45473 4.57975 4.66780 4.73690 5.08117 5.19124 5.21990 5.26743 5.30129 5.32092 5.45694 5.61172 5.67613 5.79760 5.91781 5.99317 6.02472 6.10459 6.23395 6.32161 6.49409 6.52416 6.59780 6.66762 6.71425 6.83763 7.20596 7.29158 7.46998 7.71777 7.76541 7.82562 8.23971 8.35360 8.63176 8.99136 9.55246 11.02168 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.002355 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.668032 B =11888.200297 C =12035.329129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.070 3.930 15 C -0.062 4.062 16 H 0.079 0.921 17 C -0.131 4.131 18 C -0.007 4.007 19 C -0.134 4.134 20 C -0.023 4.023 21 C -0.671 4.671 22 S 2.502 3.498 23 C -0.651 4.651 24 O -0.939 6.939 25 O -0.941 6.941 26 C -0.024 4.024 27 C -0.140 4.140 28 H 0.012 0.988 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.008 0.992 32 H 0.086 0.914 33 H 0.261 0.739 34 H 0.329 0.671 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 3.969 23.589 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.060 4.060 15 C -0.081 4.081 16 H 0.097 0.903 17 C -0.188 4.188 18 C -0.008 4.008 19 C -0.152 4.152 20 C -0.042 4.042 21 C -0.758 4.758 22 S 2.683 3.317 23 C -0.801 4.801 24 O -0.937 6.937 25 O -0.938 6.938 26 C -0.042 4.042 27 C -0.159 4.159 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.342 3.188 23.538 23.790 hybrid contribution -0.374 1.094 -1.244 1.698 sum 0.968 4.281 22.293 22.721 Atomic orbital electron populations 1.21445 0.97508 0.97382 1.01285 1.21424 0.94997 0.98257 0.99379 1.19131 0.92921 0.91470 0.85567 0.98289 1.21134 1.31764 1.12006 0.90353 0.92376 1.24885 0.95023 0.94997 0.98933 1.69869 1.36548 1.22658 1.23622 0.86637 0.79230 0.79631 0.82342 1.20412 1.21349 1.20205 1.60735 1.48657 1.15725 1.06170 1.21945 0.94254 0.98997 0.90817 1.20422 0.93856 1.01318 0.92508 0.90285 1.21710 0.95679 1.00359 1.01092 1.20423 0.93440 0.93135 0.93814 1.21227 0.99070 0.97870 0.97071 1.20914 0.91805 0.97094 0.94372 1.30342 1.22409 1.00145 1.22945 1.05020 0.75558 0.74646 0.76525 1.30235 1.16736 1.12235 1.20849 1.93586 1.77505 1.36853 1.85725 1.93580 1.61328 1.53530 1.85360 1.20879 0.93630 0.95559 0.94178 1.21248 0.97964 0.98943 0.97763 0.96847 0.92505 0.93994 0.97303 0.89587 0.92863 0.85387 0.91598 0.96193 0.92817 0.93809 0.90302 0.84782 0.84280 0.84992 0.85182 0.85042 0.84365 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.24 16 2 C -0.10 -2.43 5.59 -26.73 -0.15 -2.57 16 3 C 0.22 5.23 2.30 -68.86 -0.16 5.07 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -13.46 7.26 -34.44 -0.25 -13.71 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.36 5.10 -107.95 -0.55 -13.91 16 14 C 0.07 1.17 4.67 -3.82 -0.02 1.16 16 15 C -0.06 -0.81 2.66 -91.78 -0.24 -1.05 16 16 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 17 C -0.13 -1.60 8.89 37.16 0.33 -1.27 16 18 C -0.01 -0.09 4.78 -104.62 -0.50 -0.59 16 19 C -0.13 -1.56 8.76 -39.58 -0.35 -1.90 16 20 C -0.02 -0.24 9.47 -39.58 -0.37 -0.62 16 21 C -0.67 -6.72 5.66 -39.59 -0.22 -6.94 16 22 S 2.50 20.98 5.80 -107.50 -0.62 20.35 16 23 C -0.65 -2.50 10.79 101.05 1.09 -1.41 16 24 O -0.94 -11.04 17.13 -57.54 -0.99 -12.03 16 25 O -0.94 -10.88 17.13 -57.54 -0.99 -11.87 16 26 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 27 C -0.14 -1.54 9.67 -39.58 -0.38 -1.93 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 1.34 7.07 -51.93 -0.37 0.98 16 30 H 0.04 0.85 7.74 -51.93 -0.40 0.45 16 31 H 0.01 0.19 7.60 -51.93 -0.39 -0.21 16 32 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.33 6.33 8.13 -39.29 -0.32 6.01 16 35 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 36 H 0.02 0.37 7.94 -51.93 -0.41 -0.05 16 37 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 40 H 0.13 1.47 7.16 -52.49 -0.38 1.09 16 41 H 0.14 1.22 7.57 -52.49 -0.40 0.82 16 42 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 45 H 0.14 1.13 7.57 -52.48 -0.40 0.73 16 46 H 0.13 1.22 7.95 -52.49 -0.42 0.80 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -33.15 381.33 -10.54 -43.69 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.41 Total: 3.48 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -1.34 Total: -27.01 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.08 Total: -38.25 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.97 Total: -23.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 20.98 SS G_CDS: -0.62 Total: 20.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.15 -10.54 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.099 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds