Wall clock time and date at job start Tue Mar 31 2020 14:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47179 * 2 1 4 4 H 1.09000 * 109.46922 * 179.88896 * 3 2 1 5 5 C 1.50706 * 109.46818 * 299.88466 * 3 2 1 6 6 H 1.07996 * 119.99831 * 119.99608 * 5 3 2 7 7 C 1.37869 * 119.99674 * 300.00051 * 5 3 2 8 8 N 1.31512 * 120.00703 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46957 * 60.00345 * 9 7 5 11 11 H 1.48506 * 109.47374 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47559 * 300.00339 * 9 7 5 13 13 N 1.46904 * 109.47225 * 59.88465 * 3 2 1 14 14 C 1.46899 * 110.99584 * 85.93824 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.56169 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 C 1.52998 * 109.47274 * 64.99986 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38239 * 119.99982 * 299.72940 * 18 15 14 20 20 C 1.38236 * 120.00096 * 179.81037 * 19 18 15 21 21 C 1.38236 * 119.99667 * 0.41694 * 20 19 18 22 22 S 1.76204 * 119.99635 * 179.79235 * 21 20 19 23 23 C 1.81395 * 104.44889 * 270.01960 * 22 21 20 24 24 O 1.42093 * 104.27920 * 26.09140 * 22 21 20 25 25 O 1.42098 * 104.27516 * 153.95039 * 22 21 20 26 26 C 1.38229 * 120.00471 * 359.81220 * 21 20 19 27 27 C 1.38238 * 120.00152 * 0.02562 * 26 21 20 28 28 H 1.09001 * 109.46975 * 175.59419 * 1 2 3 29 29 H 1.09004 * 109.47119 * 55.59398 * 1 2 3 30 30 H 1.09001 * 109.47661 * 295.59577 * 1 2 3 31 31 H 1.09004 * 109.47056 * 119.99277 * 2 1 3 32 32 H 1.08993 * 109.47162 * 239.99308 * 2 1 3 33 33 H 0.97000 * 120.00606 * 179.97438 * 8 7 5 34 34 H 1.00899 * 110.99843 * 209.89295 * 13 3 2 35 35 H 1.08995 * 109.47219 * 295.55869 * 14 13 3 36 36 H 1.08999 * 109.47280 * 55.56546 * 14 13 3 37 37 H 1.09000 * 109.46983 * 59.99906 * 17 15 14 38 38 H 1.09002 * 109.47556 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47425 * 299.99738 * 17 15 14 40 40 H 1.08000 * 119.99996 * 359.97438 * 19 18 15 41 41 H 1.08001 * 120.00016 * 180.20518 * 20 19 18 42 42 H 1.08996 * 109.47377 * 60.00246 * 23 22 21 43 43 H 1.09000 * 109.47448 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.47283 * 299.99950 * 23 22 21 45 45 H 1.08004 * 120.00657 * 179.97438 * 26 21 20 46 46 H 1.07995 * 120.00482 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0020 5 6 1.5400 2.1521 -1.2320 6 1 0.9188 3.0302 -1.1346 7 6 1.8754 1.6801 -2.4831 8 7 2.6313 0.6105 -2.6017 9 14 1.2550 2.5591 -4.0102 10 1 1.7496 3.9594 -4.0105 11 1 1.7529 1.8587 -5.2213 12 1 -0.2299 2.5587 -4.0128 13 7 1.5481 2.1359 1.1981 14 6 2.4416 1.9089 2.3417 15 6 1.9592 2.7330 3.5371 16 1 1.8807 3.7811 3.2480 17 6 0.5883 2.2242 3.9873 18 6 2.9426 2.5968 4.6708 19 6 3.2046 1.3525 5.2129 20 6 4.1097 1.2270 6.2502 21 6 4.7463 2.3472 6.7512 22 16 5.8958 2.1880 8.0771 23 6 4.8879 2.3698 9.5743 24 8 6.3819 0.8578 7.9617 25 8 6.7649 3.3015 7.9229 26 6 4.4808 3.5921 6.2124 27 6 3.5782 3.7172 5.1728 28 1 -0.3633 -1.0246 -0.0789 29 1 -0.3633 0.5807 -0.8479 30 1 -0.3634 0.4440 0.9268 31 1 1.8933 -0.5137 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 2.8670 0.2782 -3.4820 34 1 1.4296 3.1223 1.0219 35 1 2.4352 0.8509 2.6035 36 1 3.4547 2.2116 2.0770 37 1 0.6667 1.1762 4.2764 38 1 0.2447 2.8110 4.8393 39 1 -0.1231 2.3228 3.1674 40 1 2.7042 0.4779 4.8242 41 1 4.3168 0.2544 6.6715 42 1 4.1285 1.5883 9.5982 43 1 5.5255 2.2842 10.4542 44 1 4.4041 3.3466 9.5702 45 1 4.9778 4.4673 6.6041 46 1 3.3704 4.6899 4.7521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449244562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:12 Heat of formation + Delta-G solvation = -78.843671 kcal Electronic energy + Delta-G solvation = -25282.489324 eV Core-core repulsion = 21683.991454 eV Total energy + Delta-G solvation = -3598.497870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65771 -38.37574 -38.12386 -36.96886 -36.16921 -33.89305 -32.27148 -32.03379 -30.61009 -30.11457 -28.36875 -26.27604 -25.09736 -24.36065 -23.68269 -21.30450 -20.84109 -19.99237 -18.80425 -18.32254 -17.21407 -17.10950 -16.93187 -16.40858 -16.16934 -15.90491 -15.58648 -15.35339 -15.03376 -14.68554 -14.46149 -14.30212 -13.98351 -13.92490 -13.90348 -13.76631 -13.50686 -13.13039 -13.11376 -13.02485 -12.82828 -12.71987 -12.55921 -12.44319 -12.29588 -12.24313 -12.05277 -11.89828 -11.61418 -11.57970 -11.41350 -11.22855 -10.79797 -10.53004 -10.06508 -10.00489 -9.00742 -8.09678 -6.22426 -0.82902 -0.15746 0.33735 1.42705 1.43705 1.50922 1.94746 2.41584 2.45608 3.07074 3.18997 3.21289 3.47310 3.70835 3.96631 3.97596 4.03111 4.13810 4.23496 4.31879 4.37734 4.45791 4.53033 4.63798 4.76398 4.79223 4.83529 4.88175 4.96625 4.98500 5.00246 5.06961 5.10247 5.16513 5.24163 5.31110 5.41722 5.48108 5.57168 5.62364 5.71326 5.83062 5.88236 5.90411 6.28454 6.48272 6.79637 7.03943 7.46717 8.95226 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.002355 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.668032 B =11888.200297 C =12035.329129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.222 3.778 4 H -0.043 1.043 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.671 5.671 14 C 0.075 3.925 15 C -0.049 4.049 16 H 0.086 0.914 17 C -0.125 4.125 18 C -0.025 4.025 19 C -0.146 4.146 20 C -0.033 4.033 21 C -0.671 4.671 22 S 2.507 3.493 23 C -0.621 4.621 24 O -0.981 6.981 25 O -0.979 6.979 26 C -0.031 4.031 27 C -0.146 4.146 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.260 0.740 34 H 0.332 0.668 35 H 0.059 0.941 36 H -0.001 1.001 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 5.092 25.882 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.025 1.025 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.301 5.301 14 C -0.055 4.055 15 C -0.068 4.068 16 H 0.104 0.896 17 C -0.183 4.183 18 C -0.026 4.026 19 C -0.164 4.164 20 C -0.051 4.051 21 C -0.757 4.757 22 S 2.690 3.310 23 C -0.775 4.775 24 O -0.978 6.978 25 O -0.976 6.976 26 C -0.049 4.049 27 C -0.165 4.165 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.017 0.983 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.173 0.827 45 H 0.175 0.825 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.020 4.320 25.796 26.155 hybrid contribution 0.083 0.740 -1.806 1.954 sum 0.103 5.061 23.990 24.518 Atomic orbital electron populations 1.21298 0.95647 0.98299 1.01062 1.21298 0.96515 0.97644 0.98232 1.18912 0.90358 0.92295 0.87053 1.02546 1.21435 1.31403 1.12046 0.91242 0.92126 1.25653 0.95250 0.95652 1.01862 1.70022 1.37748 1.24031 1.24025 0.85657 0.78902 0.78600 0.78736 1.19776 1.21433 1.19440 1.60642 1.48732 1.15577 1.05155 1.21929 0.92796 0.99470 0.91307 1.20248 0.94649 1.00762 0.91164 0.89590 1.21649 0.94562 1.00794 1.01252 1.20356 0.94201 0.93879 0.94149 1.21349 0.99650 0.97857 0.97586 1.21134 0.91680 0.98085 0.94244 1.30632 1.21677 0.99893 1.23500 1.04812 0.75554 0.72995 0.77601 1.30010 1.16282 1.14481 1.16759 1.93533 1.78945 1.38491 1.86841 1.93530 1.63381 1.54208 1.86494 1.21172 0.93428 0.96408 0.93924 1.21476 0.97815 0.99285 0.97920 0.95063 0.94538 0.92502 0.96431 0.92717 0.93083 0.85041 0.92234 0.98292 0.92774 0.91741 0.91729 0.84752 0.82943 0.82867 0.82779 0.82699 0.82500 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.52 71.98 0.69 -3.87 16 2 C -0.10 -4.76 5.59 30.59 0.17 -4.59 16 3 C 0.22 11.05 2.30 44.17 0.10 11.15 16 4 H -0.04 -2.46 7.71 -2.39 -0.02 -2.48 16 5 C -0.52 -27.76 7.26 25.60 0.19 -27.57 16 6 H 0.06 3.12 7.60 -2.91 -0.02 3.10 16 7 C 0.01 0.81 5.30 84.65 0.45 1.26 16 8 N -0.92 -53.00 11.32 21.44 0.24 -52.75 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.67 -26.54 5.10 -495.43 -2.53 -29.06 16 14 C 0.07 2.56 4.67 86.30 0.40 2.96 16 15 C -0.05 -1.25 2.66 -11.54 -0.03 -1.28 16 16 H 0.09 2.05 7.86 -2.38 -0.02 2.03 16 17 C -0.13 -2.87 8.89 71.98 0.64 -2.23 16 18 C -0.03 -0.59 4.78 -19.86 -0.09 -0.69 16 19 C -0.15 -3.33 8.76 22.27 0.20 -3.13 16 20 C -0.03 -0.67 9.47 22.27 0.21 -0.46 16 21 C -0.67 -12.60 5.66 22.27 0.13 -12.48 16 22 S 2.51 38.43 5.80 -56.49 -0.33 38.10 16 23 C -0.62 -2.19 10.79 113.37 1.22 -0.96 16 24 O -0.98 -22.59 17.13 -127.65 -2.19 -24.78 16 25 O -0.98 -21.85 17.13 -127.65 -2.19 -24.03 16 26 C -0.03 -0.58 9.47 22.27 0.21 -0.37 16 27 C -0.15 -3.04 9.67 22.27 0.22 -2.82 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.70 7.07 -2.39 -0.02 1.68 16 30 H 0.06 2.25 7.74 -2.39 -0.02 2.23 16 31 H 0.02 0.78 7.60 -2.38 -0.02 0.76 16 32 H 0.05 3.01 6.07 -2.39 -0.01 3.00 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.33 12.79 8.13 -89.69 -0.73 12.06 16 35 H 0.06 2.10 7.05 -2.39 -0.02 2.08 16 36 H 0.00 -0.04 7.94 -2.39 -0.02 -0.06 16 37 H 0.05 1.22 7.37 -2.39 -0.02 1.21 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.13 2.94 7.16 -2.91 -0.02 2.92 16 41 H 0.15 2.57 7.57 -2.91 -0.02 2.55 16 42 H 0.15 0.06 8.14 -2.39 -0.02 0.05 16 43 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.16 2.29 7.57 -2.91 -0.02 2.27 16 46 H 0.15 2.48 7.95 -2.91 -0.02 2.45 16 Total: -1.00 -73.59 381.33 -0.03 -73.62 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.24 Total: 18.88 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.69 Total: -45.09 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.29 Total: -81.82 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -4.37 Total: -48.81 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.33 Total: 38.10 kcal Total: -73.59 -0.03 -73.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.224 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds